Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002226

Physical Location & Seq

Genomic Coordinates Reverse (-)

23354522 .. 23366042

Gene Structure 11521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023418

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGGAGTCTCCCCACCAGCGGTCGCACCAGCGGCCAAGCACAGCGGCGACTTTTGCCGCCGCGCCTACCGTTTTCAAGCCGAGTTTTCTCCGATTCGGGTGTGGAGAAAAAGGTTTGAAGAAGAAGTTGATGAAGATCTTCTCTATGTTGTTGATGTGGACCGAGTACTTCAGATGGAGGACTTTAGAGAGGTTGGTACATGGATCACATCTTCAGATTATAAAAAAGCTCAACCTGATCCTCTCCGAGACTTTTCAGAAAAGCTAGTGAATGATATAAACACCAACAATATTGAAGATATTAACCGTTTTTGCAACATTTATGCTGATTTGGACTTTCAGGTATCTGAAGCAAAGTTGATATGGATTGATCAGCTAGGGCTTGACATGCGTCTTTGGTCTCCTCAGAATGGTATTTTTGAGGTTCGCATTCCCTTCCCCAGAGATGTGACGGATGAAAAAGGAGCAAAGTCAATGTTTAATTGTATGGCGCAATTAGCATGGGAGGTCGAAAAGAATTTCCATGCCCCAGATTTTGAGAAGGTGAAACAAGTAAAGCAGATAACCAATGTCCGCTTCAGCAACCTAGCAAGCAAAGAAAGCAAACCCAGATATCCGAAAATGGGTTATGCACAGCTAGTTATTGGCCCTGCAGGCAGTGGCAAGAAACCTTTTGATTGCCAAATAGAACTTTTTTCTCATGTGCCTATGCTTCGGAACTTTGTGGACCATTTAAAGAGCAAGAGTTTCAACGTTTGTGCCGTATACTTGCTCGATTCACAGTTCATGACCGATGTGACCAAGTTTATCAGTGGGTGCATGGCATCTCTTTCTGCAATGGTTCAACTTGAATTACCGCATGTTAACATTCTCTCCAAAATGGACCTTGTGACGAACAAAAAGGATATTGAAGATTTCTTGAATCCAGAGCCCCAATTTTTGTTGGCAGAGTTGAACAAACGCATGGCTCCTCAATTTGCAAAGCTTAACAAGTCTTTGTTGGAACTGGTTGATGATTATAGCATGGTGAGTTTTGTGCCACTTGACTTGAGGAAGGAGAGCAGCATTAGATATGTATTGGCTCAAATTGATACCTCGATTCAGTTCGGAGAAGATGCTGATGTGAAGGTTAAGGATTTTGATCTAGAAGATCCAGAAAACGACAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0015979 GO:0018130 GO:0019222 GO:0019438 GO:0019684 GO:0022900 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0055114 GO:0065007 GO:0070453 GO:0070455 GO:0071704 GO:1901360 GO:1901362 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2470

Protein Analysis

390

Amino Acids

44.73

Weight (kDa)

5.04

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF2470	PF10615	87 - 159	2.1e-08	Domain of unknown function (DUF2470)
ATP_bind_1	PF03029	228 - 368	5e-34	Conserved hypothetical ATP binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12790 AT4G12790 AT4G12790 AT4G12790 AT4G12790 AT4G12790
fragaria_vesca	FvH4_6g36140 FvH4_6g36141 FvH4_6g37261 FvH4_6g37261 FvH4_6g37261 FvH4_6g37261 FvH4_6g37261 FvH4_6g37261 FvH4_6g37261 FvH4_6g37261
malus_domestica	MD09G1159000.v1.1 MD17G1145200.v1.1
prunus_persica	Prupe.3G166900_v2.0.a1 Prupe.3G166900_v2.0.a1 Prupe.3G166900_v2.0.a1
pyrus_communis	pycom09g07750 pycom17g13810
rosa_chinensis	RchiOBHm_Chr2g0150081 RchiOBHm_Chr3g0481161
rosa_laevigata	RLG00000020464 RLG00000023418
rosa_multiflora	Rmu_sc0001169.1_g000004 Rmu_sc0009445.1_g000011
rosa_roxburghii	Rroxscaffold_2G00097450
rosa_rugosa	Rorug02G0418500 Rorug02G0418600 Rorug02G0418700 Rorug02G0418800 Rorug02G0418900 Rorug02G0419000 Rorug02G0419100
rosa_samantha	Rh2AG477700 Rh2BG490000 Rh2CG463500 Rh2DG498800 Rh3AG241100
rosa_wichuraiana	Rw2G038970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	222
AccI	GTMKAC	1 cut(s)	765
AccII	CGCG	1 cut(s)	63
AciI	CCGC	7 cut(s)	20, 32, 45, 58, 61, 574, 857
AclI	AACGTT	1 cut(s)	753
AclWI	GGATC	3 cut(s)	212, 233, 1145
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	517
AcuI	CTGAAG	4 cut(s)	155, 198, 369, 562
AfaI	GTAC	2 cut(s)	168, 199
AfiI	CCNNNNNNNGG	3 cut(s)	19, 410, 623
AgsI	TTSAA	9 cut(s)	77, 119, 296, 751, 845, 851, 911, 922, 955
AjuI	GAANNNNNNNTTGG	2 cut(s)	560, 592
AluBI	AGCT	6 cut(s)	230, 265, 376, 637, 985, 1167
AluI	AGCT	6 cut(s)	230, 265, 376, 637, 985, 1167
Alw26I	GTCTC	3 cut(s)	13, 243, 405
AlwI	GGATC	3 cut(s)	212, 233, 1145
AoxI	GGCC	2 cut(s)	33, 646
ApeKI	GCWGC	1 cut(s)	1062
ApoI	RAATTY	1 cut(s)	517
Asp700I	GAANNNNTTC	1 cut(s)	138
AspLEI	GCGC	2 cut(s)	65, 493
AspS9I	GGNCC	4 cut(s)	160, 647, 727, 883
AsuHPI	GGTGA	2 cut(s)	556, 1039
AvaII	GGWCC	3 cut(s)	160, 727, 883
BanII	GRGCYC	1 cut(s)	933
BbvI	GCAGC	1 cut(s)	1074
BccI	CCATC	1 cut(s)	169
BceAI	ACGGC	1 cut(s)	746
BclI	TGATCA	1 cut(s)	370
BcoDI	GTCTC	3 cut(s)	13, 243, 405
BfaI	CTAG	5 cut(s)	266, 377, 587, 638, 1145
BfmI	CTRYAG	1 cut(s)	651
BglI	GCCNNNNNGGC	1 cut(s)	654
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	5 cut(s)	33, 46, 58, 61, 1063
BlsI	GCNGC	5 cut(s)	34, 47, 59, 62, 1064
BmcAI	AGTACT	1 cut(s)	168
Bme18I	GGWCC	3 cut(s)	160, 727, 883
BmgT120I	GGNCC	4 cut(s)	160, 647, 727, 883
BmiI	GGNNCC	1 cut(s)	969
BmsI	GCATC	2 cut(s)	833, 1105
BoxI	GACNNNNGTC	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	1069
BsaBI	GATNNNNATC	2 cut(s)	135, 1140
BsaI	GGTCTC	1 cut(s)	405
BsaXI	ACNNNNNCTCC	2 cut(s)	857, 887
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 410, 623
Bse1I	ACTGG	1 cut(s)	1011
Bse3DI	GCAATG	1 cut(s)	843
Bse8I	GATNNNNATC	2 cut(s)	135, 1140
BseGI	GGATG	1 cut(s)	460
BseJI	GATNNNNATC	2 cut(s)	135, 1140
BseLI	CCNNNNNNNGG	3 cut(s)	19, 410, 623
BseMI	GCAATG	1 cut(s)	843
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	1 cut(s)	1011
BseRI	GAGGAG	2 cut(s)	393, 960
BseXI	GCAGC	1 cut(s)	1074
Bsh1236I	CGCG	1 cut(s)	63
Bsh1285I	CGRYCG	1 cut(s)	24
BshFI	GGCC	2 cut(s)	35, 648
BsiEI	CGRYCG	1 cut(s)	24
BslI	CCNNNNNNNGG	3 cut(s)	19, 410, 623
BsmAI	GTCTC	3 cut(s)	13, 243, 405
BsmI	GAATGC	1 cut(s)	429
BsnI	GGCC	2 cut(s)	35, 648
Bso31I	GGTCTC	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	933
Bsp143I	GATC	6 cut(s)	136, 204, 238, 370, 1141, 1150
BspACI	CCGC	7 cut(s)	20, 32, 45, 58, 61, 574, 857
BspANI	GGCC	2 cut(s)	35, 648
BspCNI	CTCAG	1 cut(s)	418
BspFNI	CGCG	1 cut(s)	63
BspHI	TCATGA	1 cut(s)	786
BspLI	GGNNCC	1 cut(s)	969
BspMAI	CTGCAG	1 cut(s)	655
BspPI	GGATC	3 cut(s)	212, 233, 1145
BspTNI	GGTCTC	1 cut(s)	405
BsrDI	GCAATG	1 cut(s)	843
BsrI	ACTGG	1 cut(s)	1011
BssMI	GATC	6 cut(s)	136, 204, 238, 370, 1141, 1150
BssNAI	GTATAC	1 cut(s)	766
Bst1107I	GTATAC	1 cut(s)	766
Bst4CI	ACNGT	3 cut(s)	71, 308, 783
BstC8I	GCNNGC	2 cut(s)	592, 655
BstDEI	CTNAG	1 cut(s)	405
BstF5I	GGATG	1 cut(s)	460
BstFNI	CGCG	1 cut(s)	63
BstHHI	GCGC	2 cut(s)	65, 493
BstKTI	GATC	6 cut(s)	139, 207, 241, 373, 1144, 1153
BstMAI	GTCTC	3 cut(s)	13, 243, 405
BstMBI	GATC	6 cut(s)	136, 204, 238, 370, 1141, 1150
BstMCI	CGRYCG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	6 cut(s)	32, 54, 388, 497, 600, 654
BstNSI	RCATGY	2 cut(s)	391, 863
BstPAI	GACNNNNGTC	1 cut(s)	390
BstSFI	CTRYAG	1 cut(s)	651
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	1 cut(s)	1074
BstX2I	RGATCY	2 cut(s)	136, 1150
BstYI	RGATCY	2 cut(s)	136, 1150
BstZ17I	GTATAC	1 cut(s)	766
BsuRI	GGCC	2 cut(s)	35, 648
BtsCI	GGATG	1 cut(s)	460
BtsI	GCAGTG	1 cut(s)	664
BtsIMutI	CAGTG	2 cut(s)	664, 817
Cac8I	GCNNGC	2 cut(s)	592, 655
CciI	TCATGA	1 cut(s)	786
CfoI	GCGC	2 cut(s)	65, 493
Cfr13I	GGNCC	4 cut(s)	160, 647, 727, 883
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	2 cut(s)	167, 198
CspCI	CAANNNNNGTGG	2 cut(s)	1029, 1064
CviQI	GTAC	2 cut(s)	167, 198
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	6 cut(s)	138, 206, 240, 372, 1143, 1152
DpnII	GATC	6 cut(s)	136, 204, 238, 370, 1141, 1150
DraI	TTTAAA	1 cut(s)	735
EaeI	YGGCCR	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	933
Eco31I	GGTCTC	1 cut(s)	405
Eco32I	GATATC	1 cut(s)	614
Eco47I	GGWCC	3 cut(s)	160, 727, 883
Eco57I	CTGAAG	4 cut(s)	155, 198, 369, 562
EcoRV	GATATC	1 cut(s)	614
EcoT38I	GRGCYC	1 cut(s)	933
FbaI	TGATCA	1 cut(s)	370
FblI	GTMKAC	1 cut(s)	765
Fnu4HI	GCNGC	5 cut(s)	33, 46, 58, 61, 1063
FokI	GGATG	1 cut(s)	467
FriOI	GRGCYC	1 cut(s)	933
Fsp4HI	GCNGC	5 cut(s)	33, 46, 58, 61, 1063
FspBI	CTAG	5 cut(s)	266, 377, 587, 638, 1145
GlaI	GCGC	2 cut(s)	64, 492
GluI	GCNGC	5 cut(s)	33, 46, 58, 61, 1063
HaeIII	GGCC	2 cut(s)	35, 648
HgaI	GACGC	1 cut(s)	380
HhaI	GCGC	2 cut(s)	65, 493
Hin6I	GCGC	2 cut(s)	63, 491
HinP1I	GCGC	2 cut(s)	63, 491
HincII	GTYRAC	1 cut(s)	865
HindII	GTYRAC	1 cut(s)	865
HindIII	AAGCTT	1 cut(s)	983
HinfI	GANTC	5 cut(s)	6, 94, 776, 922, 1099
HpaI	GTTAAC	1 cut(s)	865
HphI	GGTGA	2 cut(s)	556, 1039
Hpy166II	GTNNAC	4 cut(s)	160, 727, 766, 865
Hpy188III	TCNNGA	5 cut(s)	787, 919, 926, 1145, 1154
Hpy8I	GTNNAC	4 cut(s)	160, 727, 766, 865
HpyAV	CCTTC	4 cut(s)	445, 535, 1048, 1120
HpyCH4III	ACNGT	3 cut(s)	71, 308, 783
HpyCH4IV	ACGT	1 cut(s)	753
HpyCH4V	TGCA	6 cut(s)	315, 632, 653, 819, 836, 980
HpyF10VI	GCNNNNNNNGC	6 cut(s)	32, 54, 388, 497, 600, 654
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	1 cut(s)	753
HspAI	GCGC	2 cut(s)	63, 491
Ksp22I	TGATCA	1 cut(s)	370
KspAI	GTTAAC	1 cut(s)	865
Kzo9I	GATC	6 cut(s)	136, 204, 238, 370, 1141, 1150
LmnI	GCTCC	2 cut(s)	464, 973
Lsp1109I	GCAGC	1 cut(s)	1074
LweI	GCATC	2 cut(s)	833, 1105
MaeI	CTAG	5 cut(s)	266, 377, 587, 638, 1145
MaeII	ACGT	1 cut(s)	753
MaeIII	GTNAC	3 cut(s)	448, 796, 889
MalI	GATC	6 cut(s)	138, 206, 240, 372, 1143, 1152
MboI	GATC	6 cut(s)	136, 204, 238, 370, 1141, 1150
MboII	GAAGA	9 cut(s)	131, 131, 134, 146, 204, 308, 923, 1124, 1160
MflI	RGATCY	2 cut(s)	136, 1150
MhlI	GDGCHC	1 cut(s)	933
MluCI	AATT	7 cut(s)	481, 494, 517, 851, 935, 974, 1086
MlyI	GAGTC	1 cut(s)	15
MmeI	TCCRAC	1 cut(s)	981
MnlI	CCTC	9 cut(s)	172, 184, 252, 414, 415, 499, 981, 1044, 1105
MroXI	GAANNNNTTC	1 cut(s)	138
MseI	TTAA	6 cut(s)	303, 480, 734, 864, 987, 1131
MspA1I	CMGCKG	4 cut(s)	20, 32, 45, 1167
Mva1269I	GAATGC	1 cut(s)	429
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	6 cut(s)	32, 54, 388, 497, 600, 654
NdeII	GATC	6 cut(s)	136, 204, 238, 370, 1141, 1150
NlaIV	GGNNCC	1 cut(s)	969
NmeAIII	GCCGAG	1 cut(s)	106
NmuCI	GTSAC	3 cut(s)	448, 796, 889
NspI	RCATGY	2 cut(s)	391, 863
PagI	TCATGA	1 cut(s)	786
PcsI	WCGNNNNNNNCGW	1 cut(s)	759
PctI	GAATGC	1 cut(s)	429
PdmI	GAANNNNTTC	1 cut(s)	138
PfeI	GAWTC	4 cut(s)	94, 776, 922, 1099
PkrI	GCNGC	5 cut(s)	34, 47, 59, 62, 1064
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PshAI	GACNNNNGTC	1 cut(s)	390
PsiI	TTATAA	1 cut(s)	222
Psp1406I	AACGTT	1 cut(s)	753
PspN4I	GGNNCC	1 cut(s)	969
PspPI	GGNCC	4 cut(s)	160, 647, 727, 883
PstI	CTGCAG	1 cut(s)	655
PsuI	RGATCY	2 cut(s)	136, 1150
PvuII	CAGCTG	1 cut(s)	1167
RsaI	GTAC	2 cut(s)	168, 199
RsaNI	GTAC	2 cut(s)	167, 198
SaqAI	TTAA	6 cut(s)	303, 480, 734, 864, 987, 1131
SatI	GCNGC	5 cut(s)	33, 46, 58, 61, 1063
Sau3AI	GATC	6 cut(s)	136, 204, 238, 370, 1141, 1150
Sau96I	GGNCC	4 cut(s)	160, 647, 727, 883
SbfI	CCTGCAGG	1 cut(s)	655
ScaI	AGTACT	1 cut(s)	168
SchI	GAGTC	1 cut(s)	15
SdaI	CCTGCAGG	1 cut(s)	655
SduI	GDGCHC	1 cut(s)	933
SfaNI	GCATC	2 cut(s)	833, 1105
SfcI	CTRYAG	1 cut(s)	651
SinI	GGWCC	3 cut(s)	160, 727, 883
SmlI	CTYRAG	1 cut(s)	1048
SmoI	CTYRAG	1 cut(s)	1048
Sse8387I	CCTGCAGG	1 cut(s)	655
Sse9I	AATT	7 cut(s)	481, 494, 517, 851, 935, 974, 1086
SsiI	CCGC	7 cut(s)	20, 32, 45, 58, 61, 574, 857
SspI	AATATT	1 cut(s)	292
SspMI	CTAG	5 cut(s)	266, 377, 587, 638, 1145
TaaI	ACNGT	3 cut(s)	71, 308, 783
TaiI	ACGT	1 cut(s)	756
TaqI	TCGA	3 cut(s)	510, 774, 1097
TaqII	GACCGA	2 cut(s)	177, 806
TasI	AATT	7 cut(s)	481, 494, 517, 851, 935, 974, 1086
TatI	WGTACW	1 cut(s)	166
TauI	GCSGC	4 cut(s)	35, 48, 60, 63
TfiI	GAWTC	4 cut(s)	94, 776, 922, 1099
Tru1I	TTAA	6 cut(s)	303, 480, 734, 864, 987, 1131
Tru9I	TTAA	6 cut(s)	303, 480, 734, 864, 987, 1131
TscAI	CASTG	2 cut(s)	664, 817
TseFI	GTSAC	3 cut(s)	448, 796, 889
TseI	GCWGC	1 cut(s)	1062
Tsp45I	GTSAC	3 cut(s)	448, 796, 889
TspDTI	ATGAA	3 cut(s)	147, 471, 775
TspGWI	ACGGA	1 cut(s)	467
TspRI	CASTG	2 cut(s)	664, 817
VpaK11BI	GGWCC	3 cut(s)	160, 727, 883
XapI	RAATTY	1 cut(s)	517
XbaI	TCTAGA	1 cut(s)	1144
XceI	RCATGY	2 cut(s)	391, 863
XmiI	GTMKAC	1 cut(s)	765
XmnI	GAANNNNTTC	1 cut(s)	138
XspI	CTAG	5 cut(s)	266, 377, 587, 638, 1145
ZrmI	AGTACT	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.