Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002226

Physical Location & Seq

Genomic Coordinates Forward (+)

5885405 .. 5888128

Gene Structure 2724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g07750.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGGTTACGCGCAGCTGGTTATTGGCCCTGCTGGCAGCGGCAAGTCGACTTATTGCTCTAGTTTGCACGAACACTGTACGGCTATTGGGAGGAGTATCAATATTGTTAATTTGGATCCTGCTGCAGAAAATTTTGACTACCCTGTGGCCATGGATATTAGGGAACTTGTTTCCTTGGAGGATGTTATGGAGGAACTTGGTTTGGGTCCCAATGGTGGACTTTTATACTGCATGGAACACCTGGAAGACAATCTGGATGAATGGCTCACGGAGGAACTGGACAATTACACGGATGATGACTACTTAGTCTTTGACTGCCCAGGCCAGATAGAACTTTTCTCGCATGTGCCTGTGCTACGGAACTTCGTGGAGCATCTGCAGCGTAAAAATTTCAAAGTCTGTGTCGTCTACTTGCTTGATTCTCAGTTCATTACGGATGTGACTAAGTTTATTAGTGGGTGCATGGCGTCTCTTTCTGCCATGATTCAACTTGAATTACCACATGTTAATATCCTCTCCAAAATGGACCTTGCACCGAGAAAAAAGGATATTGAAGACTTCTTGTATCCGGAGCCTCAAGTTTTATTATCAGAGTTGAATCAACGCATGGCTCCTCAGTTTGCAAAGCTAAATAAATCTTTGATTGAACTGGTCGATGATTATAGCATGGTGAGTTTTCTGCCGCTAGACTTGAGGAAGTCAAGCAGCATGAGCTATGTCCTGGCTCAGATCGATACCTGCATTCAGTTCGGAGAAGATGCCGATGTGAAGGTTAAGGAATTTGATCAGGAAGAAGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

268

Amino Acids

30.22

Weight (kDa)

4.31

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12790 AT4G12790 AT4G12790 AT4G12790 AT4G12790 AT4G12790
fragaria_vesca	FvH4_6g36140 FvH4_6g36141 FvH4_6g37261 FvH4_6g37261 FvH4_6g37261 FvH4_6g37261 FvH4_6g37261 FvH4_6g37261 FvH4_6g37261 FvH4_6g37261
malus_domestica	MD09G1159000.v1.1 MD17G1145200.v1.1
prunus_persica	Prupe.3G166900_v2.0.a1 Prupe.3G166900_v2.0.a1 Prupe.3G166900_v2.0.a1
pyrus_communis	pycom09g07750 pycom17g13810
rosa_chinensis	RchiOBHm_Chr2g0150081 RchiOBHm_Chr3g0481161
rosa_laevigata	RLG00000020464 RLG00000023418
rosa_multiflora	Rmu_sc0001169.1_g000004 Rmu_sc0009445.1_g000011
rosa_roxburghii	Rroxscaffold_2G00097450
rosa_rugosa	Rorug02G0418500 Rorug02G0418600 Rorug02G0418700 Rorug02G0418800 Rorug02G0418900 Rorug02G0419000 Rorug02G0419100
rosa_samantha	Rh2AG477700 Rh2BG490000 Rh2CG463500 Rh2DG498800 Rh3AG241100
rosa_wichuraiana	Rw2G038970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	305
Acc36I	ACCTGC	1 cut(s)	746
AccI	GTMKAC	2 cut(s)	47, 408
AccII	CGCG	1 cut(s)	11
AccIII	TCCGGA	1 cut(s)	568
AciI	CCGC	2 cut(s)	39, 683
AclWI	GGATC	2 cut(s)	110, 123
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	3 cut(s)	130, 388, 779
AcyI	GRCGYC	1 cut(s)	467
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	1 cut(s)	215
AflIII	ACRYGT	1 cut(s)	502
AgsI	TTSAA	6 cut(s)	394, 488, 494, 554, 598, 647
AjnI	CCWGG	3 cut(s)	240, 319, 720
AluBI	AGCT	3 cut(s)	16, 628, 714
AluI	AGCT	3 cut(s)	16, 628, 714
Alw26I	GTCTC	1 cut(s)	474
AlwI	GGATC	2 cut(s)	110, 123
Aor13HI	TCCGGA	1 cut(s)	568
AoxI	GGCC	3 cut(s)	25, 147, 322
ApeKI	GCWGC	5 cut(s)	13, 36, 122, 379, 705
ApoI	RAATTY	3 cut(s)	130, 388, 779
ArsI	GACNNNNNNTTYG	2 cut(s)	387, 419
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	3 cut(s)	26, 206, 526
AsuHPI	GGTGA	1 cut(s)	682
AvaII	GGWCC	2 cut(s)	206, 526
BalI	TGGCCA	1 cut(s)	149
BamHI	GGATCC	1 cut(s)	115
BbsI	GAAGAC	2 cut(s)	252, 561
BbvI	GCAGC	5 cut(s)	25, 48, 109, 391, 717
BceAI	ACGGC	1 cut(s)	96
BcgI	CGANNNNNNTGC	2 cut(s)	730, 764
BciT130I	CCWGG	3 cut(s)	242, 321, 722
BciVI	GTATCC	1 cut(s)	576
BclI	TGATCA	1 cut(s)	784
BcoDI	GTCTC	1 cut(s)	474
BfaI	CTAG	2 cut(s)	60, 686
BfmI	CTRYAG	2 cut(s)	123, 377
BfuAI	ACCTGC	1 cut(s)	746
BfuI	GTATCC	1 cut(s)	576
BglI	GCCNNNNNGGC	1 cut(s)	33
BisI	GCNGC	7 cut(s)	14, 37, 40, 123, 380, 683, 706
BlsI	GCNGC	7 cut(s)	15, 38, 41, 124, 381, 684, 707
Bme1390I	CCNGG	3 cut(s)	242, 321, 722
Bme18I	GGWCC	2 cut(s)	206, 526
BmgT120I	GGNCC	3 cut(s)	26, 206, 526
BmiI	GGNNCC	5 cut(s)	117, 207, 208, 573, 612
BmrFI	CCNGG	3 cut(s)	242, 321, 722
BmsI	GCATC	2 cut(s)	382, 748
BpiI	GAAGAC	2 cut(s)	252, 561
BpuEI	CTTGAG	2 cut(s)	561, 712
Bsa29I	ATCGAT	1 cut(s)	732
BsaHI	GRCGYC	1 cut(s)	467
BsaJI	CCNNGG	3 cut(s)	150, 174, 319
BsaWI	WCCGGW	1 cut(s)	568
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse1I	ACTGG	2 cut(s)	282, 654
BseAI	TCCGGA	1 cut(s)	568
BseBI	CCWGG	3 cut(s)	242, 321, 722
BseCI	ATCGAT	1 cut(s)	732
BseDI	CCNNGG	3 cut(s)	150, 174, 319
BseGI	GGATG	4 cut(s)	187, 262, 298, 442
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMII	CTCAG	3 cut(s)	437, 629, 740
BseNI	ACTGG	2 cut(s)	282, 654
BseRI	GAGGAG	2 cut(s)	106, 603
BseXI	GCAGC	5 cut(s)	25, 48, 109, 391, 717
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	3 cut(s)	27, 149, 324
BshVI	ATCGAT	1 cut(s)	732
BsiSI	CCGG	1 cut(s)	569
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	474
BsmBI	CGTCTC	1 cut(s)	474
BsmFI	GGGAC	1 cut(s)	192
BsmI	GAATGC	1 cut(s)	741
BsnI	GGCC	3 cut(s)	27, 149, 324
Bsp13I	TCCGGA	1 cut(s)	568
Bsp143I	GATC	3 cut(s)	115, 729, 784
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	2 cut(s)	39, 683
BspANI	GGCC	3 cut(s)	27, 149, 324
BspCNI	CTCAG	3 cut(s)	436, 628, 739
BspDI	ATCGAT	1 cut(s)	732
BspEI	TCCGGA	1 cut(s)	568
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	5 cut(s)	117, 207, 208, 573, 612
BspMAI	CTGCAG	2 cut(s)	127, 381
BspMI	ACCTGC	1 cut(s)	746
BspPI	GGATC	2 cut(s)	110, 123
BsrI	ACTGG	2 cut(s)	282, 654
BssECI	CCNNGG	3 cut(s)	150, 174, 319
BssMI	GATC	3 cut(s)	115, 729, 784
BssNI	GRCGYC	1 cut(s)	467
BssT1I	CCWWGG	2 cut(s)	150, 174
Bst2UI	CCWGG	3 cut(s)	242, 321, 722
Bst4CI	ACNGT	1 cut(s)	77
BstACI	GRCGYC	1 cut(s)	467
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	5 cut(s)	304, 423, 444, 615, 726
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	4 cut(s)	187, 262, 298, 442
BstFNI	CGCG	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	3 cut(s)	118, 732, 787
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	3 cut(s)	115, 729, 784
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 379, 711
BstNI	CCWGG	3 cut(s)	242, 321, 722
BstNSI	RCATGY	2 cut(s)	347, 506
BstSCI	CCNGG	3 cut(s)	240, 319, 720
BstSFI	CTRYAG	2 cut(s)	123, 377
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	5 cut(s)	25, 48, 109, 391, 717
BstV2I	GAAGAC	2 cut(s)	252, 561
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
Bsu15I	ATCGAT	1 cut(s)	732
BsuI	GTATCC	1 cut(s)	576
BsuRI	GGCC	3 cut(s)	27, 149, 324
BsuTUI	ATCGAT	1 cut(s)	732
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	4 cut(s)	187, 262, 298, 442
BtsIMutI	CAGTG	1 cut(s)	73
BveI	ACCTGC	1 cut(s)	746
Cac8I	GCNNGC	1 cut(s)	34
CfoI	GCGC	1 cut(s)	13
Cfr13I	GGNCC	3 cut(s)	26, 206, 526
ClaI	ATCGAT	1 cut(s)	732
CseI	GACGC	1 cut(s)	456
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	9 cut(s)	151, 232, 344, 463, 481, 503, 607, 667, 709
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	5 cut(s)	304, 423, 444, 615, 726
DpnI	GATC	3 cut(s)	117, 731, 786
DpnII	GATC	3 cut(s)	115, 729, 784
DrdI	GACNNNNNNGTC	1 cut(s)	305
DseDI	GACNNNNNNGTC	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	147
Eco130I	CCWWGG	2 cut(s)	150, 174
Eco47I	GGWCC	2 cut(s)	206, 526
EcoO109I	RGGNCCY	1 cut(s)	206
EcoRII	CCWGG	3 cut(s)	240, 319, 720
EcoT14I	CCWWGG	2 cut(s)	150, 174
ErhI	CCWWGG	2 cut(s)	150, 174
Esp3I	CGTCTC	1 cut(s)	474
FaeI	CATG	9 cut(s)	154, 235, 347, 466, 484, 506, 610, 670, 712
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	9 cut(s)	150, 231, 343, 462, 480, 502, 606, 666, 708
FbaI	TGATCA	1 cut(s)	784
FblI	GTMKAC	2 cut(s)	47, 408
Fnu4HI	GCNGC	7 cut(s)	14, 37, 40, 123, 380, 683, 706
FokI	GGATG	4 cut(s)	194, 269, 305, 449
Fsp4HI	GCNGC	7 cut(s)	14, 37, 40, 123, 380, 683, 706
FspBI	CTAG	2 cut(s)	60, 686
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	7 cut(s)	14, 37, 40, 123, 380, 683, 706
HaeIII	GGCC	3 cut(s)	27, 149, 324
HapII	CCGG	1 cut(s)	569
HgaI	GACGC	1 cut(s)	456
HhaI	GCGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	467
Hin1II	CATG	9 cut(s)	154, 235, 347, 466, 484, 506, 610, 670, 712
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HinfI	GANTC	3 cut(s)	419, 484, 598
HpaII	CCGG	1 cut(s)	569
HphI	GGTGA	1 cut(s)	682
Hpy166II	GTNNAC	3 cut(s)	48, 218, 409
Hpy188I	TCNGA	3 cut(s)	592, 729, 752
Hpy188III	TCNNGA	3 cut(s)	254, 569, 788
Hpy8I	GTNNAC	3 cut(s)	48, 218, 409
HpyAV	CCTTC	1 cut(s)	763
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4V	TGCA	8 cut(s)	67, 125, 231, 379, 462, 533, 623, 741
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 379, 711
HpyF3I	CTNAG	5 cut(s)	304, 423, 444, 615, 726
Hsp92I	GRCGYC	1 cut(s)	467
Hsp92II	CATG	9 cut(s)	154, 235, 347, 466, 484, 506, 610, 670, 712
HspAI	GCGC	1 cut(s)	11
KflI	GGGWCCC	1 cut(s)	206
Kpn2I	TCCGGA	1 cut(s)	568
Ksp22I	TGATCA	1 cut(s)	784
Kzo9I	GATC	3 cut(s)	115, 729, 784
LmnI	GCTCC	3 cut(s)	370, 571, 616
Lsp1109I	GCAGC	5 cut(s)	25, 48, 109, 391, 717
LweI	GCATC	2 cut(s)	382, 748
MaeI	CTAG	2 cut(s)	60, 686
MaeIII	GTNAC	2 cut(s)	5, 439
MalI	GATC	3 cut(s)	117, 731, 786
MboI	GATC	3 cut(s)	115, 729, 784
MboII	GAAGA	4 cut(s)	257, 566, 767, 803
MflI	RGATCY	1 cut(s)	115
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	6 cut(s)	109, 130, 283, 388, 494, 779
MluNI	TGGCCA	1 cut(s)	149
MnlI	CCTC	8 cut(s)	84, 172, 184, 265, 524, 585, 624, 687
Mox20I	TGGCCA	1 cut(s)	149
MroI	TCCGGA	1 cut(s)	568
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	3 cut(s)	108, 507, 774
Msp20I	TGGCCA	1 cut(s)	149
MspA1I	CMGCKG	2 cut(s)	16, 39
MspI	CCGG	1 cut(s)	569
MspR9I	CCNGG	3 cut(s)	242, 321, 722
Mva1269I	GAATGC	1 cut(s)	741
MvaI	CCWGG	3 cut(s)	242, 321, 722
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	3 cut(s)	33, 379, 711
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	3 cut(s)	115, 729, 784
NlaIII	CATG	9 cut(s)	154, 235, 347, 466, 484, 506, 610, 670, 712
NlaIV	GGNNCC	5 cut(s)	117, 207, 208, 573, 612
NmuCI	GTSAC	1 cut(s)	439
NspI	RCATGY	2 cut(s)	347, 506
PciI	ACATGT	1 cut(s)	502
PctI	GAATGC	1 cut(s)	741
PfeI	GAWTC	3 cut(s)	419, 484, 598
PkrI	GCNGC	7 cut(s)	15, 38, 41, 124, 381, 684, 707
PpuMI	RGGWCCY	1 cut(s)	206
PscI	ACATGT	1 cut(s)	502
Psp5II	RGGWCCY	1 cut(s)	206
Psp6I	CCWGG	3 cut(s)	240, 319, 720
PspGI	CCWGG	3 cut(s)	240, 319, 720
PspN4I	GGNNCC	5 cut(s)	117, 207, 208, 573, 612
PspPI	GGNCC	3 cut(s)	26, 206, 526
PspPPI	RGGWCCY	1 cut(s)	206
PstI	CTGCAG	2 cut(s)	127, 381
PsuI	RGATCY	1 cut(s)	115
PvuII	CAGCTG	1 cut(s)	16
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
SalI	GTCGAC	1 cut(s)	46
SaqAI	TTAA	3 cut(s)	108, 507, 774
SatI	GCNGC	7 cut(s)	14, 37, 40, 123, 380, 683, 706
Sau3AI	GATC	3 cut(s)	115, 729, 784
Sau96I	GGNCC	3 cut(s)	26, 206, 526
ScrFI	CCNGG	3 cut(s)	242, 321, 722
SetI	ASST	7 cut(s)	18, 243, 531, 630, 716, 740, 774
SfaNI	GCATC	2 cut(s)	382, 748
SfcI	CTRYAG	2 cut(s)	123, 377
SinI	GGWCC	2 cut(s)	206, 526
SmlI	CTYRAG	2 cut(s)	576, 691
SmoI	CTYRAG	2 cut(s)	576, 691
Sse9I	AATT	6 cut(s)	109, 130, 283, 388, 494, 779
SsiI	CCGC	2 cut(s)	39, 683
SspI	AATATT	1 cut(s)	103
SspMI	CTAG	2 cut(s)	60, 686
StyD4I	CCNGG	3 cut(s)	240, 319, 720
StyI	CCWWGG	2 cut(s)	150, 174
TaaI	ACNGT	1 cut(s)	77
TaqI	TCGA	3 cut(s)	47, 654, 732
TasI	AATT	6 cut(s)	109, 130, 283, 388, 494, 779
TauI	GCSGC	2 cut(s)	42, 685
TfiI	GAWTC	3 cut(s)	419, 484, 598
Tru1I	TTAA	3 cut(s)	108, 507, 774
Tru9I	TTAA	3 cut(s)	108, 507, 774
TscAI	CASTG	1 cut(s)	80
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	5 cut(s)	13, 36, 122, 379, 705
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	2 cut(s)	273, 418
TspGWI	ACGGA	4 cut(s)	284, 305, 373, 449
TspRI	CASTG	1 cut(s)	80
VpaK11BI	GGWCC	2 cut(s)	206, 526
XapI	RAATTY	3 cut(s)	130, 388, 779
XceI	RCATGY	2 cut(s)	347, 506
XmiI	GTMKAC	2 cut(s)	47, 408
XspI	CTAG	2 cut(s)	60, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.