Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002226

Physical Location & Seq

Genomic Coordinates Forward (+)

25262071 .. 25268055

Gene Structure 5985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG241100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGGTTATGCACAGCTAGTTATTGGCCCTGCAGGCAGTGGCAAGTCCACTTATTGCTCCAGTTTGCACCAACACTGTTTAGATAATGGAAGGACTCTACATATTGTTAACTTAGATCCTGCTGCAGAGCATTTTGACTACCCTGTGGCTTTGGATATCAGGGAGCTTATTAACTTGGATGATGTTATGGAGGAACTTGGACTGGGTCCCAATGGTGGACTTATGTACTGCATGGAACACCTTGAAGATAATCTGGATGATTGGCTTGCAGAGGGATTGGAGGATTACCTGGATGATGACTACTTAGTTTTTGACTGCCCAGGCCAAATAGAACTTTTTTCTCATGTGCCTATGCTTCGGAACTTTGTGGACCATTTAAAGAGCAAGAGTTTCAACGTTTGTGCCGTATACTTGCTCGATTCACAGTTCATGACCGATGTGACCAAGTTTATCAGTGGGTGCATGGCATCTCTTTCTGCAATGGTTCAACTTGAATTACCGCATGTTAACATTCTCTCCAAAATGGACCTTGTGACGAACAAAAAGGATATTGAAGATTTCTTGAATCCAGAGCCCCAATTTTTGTTGTCAGAGTTGAACAAACGCATGGCTCCTCAATTTGCAAAGCTTAACAAGTCTTTGATGGAACTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

218

Amino Acids

24.56

Weight (kDa)

4.48

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP_bind_1	PF03029	7 - 217	1.2e-77	Conserved hypothetical ATP binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12790 AT4G12790 AT4G12790 AT4G12790 AT4G12790 AT4G12790
fragaria_vesca	FvH4_6g36140 FvH4_6g36141 FvH4_6g37261 FvH4_6g37261 FvH4_6g37261 FvH4_6g37261 FvH4_6g37261 FvH4_6g37261 FvH4_6g37261 FvH4_6g37261
malus_domestica	MD09G1159000.v1.1 MD17G1145200.v1.1
prunus_persica	Prupe.3G166900_v2.0.a1 Prupe.3G166900_v2.0.a1 Prupe.3G166900_v2.0.a1
pyrus_communis	pycom09g07750 pycom17g13810
rosa_chinensis	RchiOBHm_Chr2g0150081 RchiOBHm_Chr3g0481161
rosa_laevigata	RLG00000020464 RLG00000023418
rosa_multiflora	Rmu_sc0001169.1_g000004 Rmu_sc0009445.1_g000011
rosa_roxburghii	Rroxscaffold_2G00097450
rosa_rugosa	Rorug02G0418500 Rorug02G0418600 Rorug02G0418700 Rorug02G0418800 Rorug02G0418900 Rorug02G0419000 Rorug02G0419100
rosa_samantha	Rh2AG477700 Rh2BG490000 Rh2CG463500 Rh2DG498800 Rh3AG241100
rosa_wichuraiana	Rw2G038970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	408
AciI	CCGC	1 cut(s)	500
AclI	AACGTT	1 cut(s)	396
AclWI	GGATC	1 cut(s)	110
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	7 cut(s)	245, 394, 488, 494, 554, 565, 598
AjnI	CCWGG	2 cut(s)	288, 319
AluBI	AGCT	3 cut(s)	16, 166, 628
AluI	AGCT	3 cut(s)	16, 166, 628
AlwI	GGATC	1 cut(s)	110
AoxI	GGCC	2 cut(s)	25, 322
ApeKI	GCWGC	1 cut(s)	122
AspS9I	GGNCC	4 cut(s)	26, 206, 370, 526
AvaII	GGWCC	3 cut(s)	206, 370, 526
BanII	GRGCYC	1 cut(s)	576
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	1 cut(s)	637
BceAI	ACGGC	1 cut(s)	389
BciT130I	CCWGG	2 cut(s)	290, 321
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	2 cut(s)	30, 123
BglI	GCCNNNNNGGC	1 cut(s)	33
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	2 cut(s)	290, 321
Bme18I	GGWCC	3 cut(s)	206, 370, 526
BmgT120I	GGNCC	4 cut(s)	26, 206, 370, 526
BmiI	GGNNCC	3 cut(s)	207, 208, 612
BmrFI	CCNGG	2 cut(s)	290, 321
BmrI	ACTGGG	1 cut(s)	212
BmsI	GCATC	1 cut(s)	476
BmuI	ACTGGG	1 cut(s)	212
BpmI	CTGGAG	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	319
BsaXI	ACNNNNNCTCC	2 cut(s)	500, 530
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse1I	ACTGG	3 cut(s)	60, 207, 654
Bse3DI	GCAATG	1 cut(s)	486
BseBI	CCWGG	2 cut(s)	290, 321
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	3 cut(s)	184, 262, 298
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMI	GCAATG	1 cut(s)	486
BseNI	ACTGG	3 cut(s)	60, 207, 654
BseRI	GAGGAG	1 cut(s)	603
BseXI	GCAGC	1 cut(s)	109
BshFI	GGCC	2 cut(s)	27, 324
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	192
BsnI	GGCC	2 cut(s)	27, 324
Bsp1286I	GDGCHC	1 cut(s)	576
Bsp143I	GATC	1 cut(s)	115
BspACI	CCGC	1 cut(s)	500
BspANI	GGCC	2 cut(s)	27, 324
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	3 cut(s)	207, 208, 612
BspMAI	CTGCAG	2 cut(s)	34, 127
BspPI	GGATC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	486
BsrI	ACTGG	3 cut(s)	60, 207, 654
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	1 cut(s)	115
BssNAI	GTATAC	1 cut(s)	409
Bst1107I	GTATAC	1 cut(s)	409
Bst2UI	CCWGG	2 cut(s)	290, 321
Bst4CI	ACNGT	2 cut(s)	77, 426
BstC8I	GCNNGC	2 cut(s)	34, 267
BstDEI	CTNAG	2 cut(s)	112, 304
BstF5I	GGATG	3 cut(s)	184, 262, 298
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstNI	CCWGG	2 cut(s)	290, 321
BstNSI	RCATGY	1 cut(s)	506
BstSCI	CCNGG	2 cut(s)	288, 319
BstSFI	CTRYAG	2 cut(s)	30, 123
BstV1I	GCAGC	1 cut(s)	109
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BstZ17I	GTATAC	1 cut(s)	409
BsuRI	GGCC	2 cut(s)	27, 324
BtsCI	GGATG	3 cut(s)	184, 262, 298
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	3 cut(s)	43, 73, 460
Cac8I	GCNNGC	2 cut(s)	34, 267
CciI	TCATGA	1 cut(s)	429
Cfr13I	GGNCC	4 cut(s)	26, 206, 370, 526
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	6 cut(s)	232, 344, 430, 463, 503, 607
CviJI	RGCY	9 cut(s)	16, 27, 149, 166, 265, 324, 574, 611, 628
CviKI_1	RGCY	9 cut(s)	16, 27, 149, 166, 265, 324, 574, 611, 628
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	2 cut(s)	112, 304
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
DraI	TTTAAA	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	576
Eco32I	GATATC	1 cut(s)	157
Eco47I	GGWCC	3 cut(s)	206, 370, 526
EcoO109I	RGGNCCY	1 cut(s)	206
EcoRII	CCWGG	2 cut(s)	288, 319
EcoRV	GATATC	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	576
FaeI	CATG	6 cut(s)	235, 347, 433, 466, 506, 610
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	6 cut(s)	231, 343, 429, 462, 502, 606
FblI	GTMKAC	1 cut(s)	408
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	3 cut(s)	191, 269, 305
FriOI	GRGCYC	1 cut(s)	576
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	1 cut(s)	17
GluI	GCNGC	1 cut(s)	123
GsuI	CTGGAG	1 cut(s)	43
HaeIII	GGCC	2 cut(s)	27, 324
Hin1II	CATG	6 cut(s)	235, 347, 433, 466, 506, 610
HincII	GTYRAC	2 cut(s)	109, 508
HindII	GTYRAC	2 cut(s)	109, 508
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	3 cut(s)	94, 419, 565
HpaI	GTTAAC	2 cut(s)	109, 508
Hpy166II	GTNNAC	6 cut(s)	48, 109, 218, 370, 409, 508
Hpy188I	TCNGA	2 cut(s)	360, 592
Hpy188III	TCNNGA	4 cut(s)	254, 430, 562, 569
Hpy8I	GTNNAC	6 cut(s)	48, 109, 218, 370, 409, 508
HpyAV	CCTTC	1 cut(s)	84
HpyCH4III	ACNGT	2 cut(s)	77, 426
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	9 cut(s)	11, 32, 67, 125, 231, 269, 462, 479, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpyF3I	CTNAG	2 cut(s)	112, 304
HpySE526I	ACGT	1 cut(s)	396
Hsp92II	CATG	6 cut(s)	235, 347, 433, 466, 506, 610
KflI	GGGWCCC	1 cut(s)	206
KspAI	GTTAAC	2 cut(s)	109, 508
Kzo9I	GATC	1 cut(s)	115
LmnI	GCTCC	3 cut(s)	62, 163, 616
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	1 cut(s)	476
MaeI	CTAG	1 cut(s)	17
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	2 cut(s)	439, 532
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	2 cut(s)	257, 566
MflI	RGATCY	1 cut(s)	115
MhlI	GDGCHC	1 cut(s)	576
MluCI	AATT	3 cut(s)	494, 578, 617
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	4 cut(s)	184, 265, 274, 624
MseI	TTAA	5 cut(s)	108, 171, 377, 507, 630
MspR9I	CCNGG	2 cut(s)	290, 321
MvaI	CCWGG	2 cut(s)	290, 321
MwoI	GCNNNNNNNGC	1 cut(s)	33
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	6 cut(s)	235, 347, 433, 466, 506, 610
NlaIV	GGNNCC	3 cut(s)	207, 208, 612
NmuCI	GTSAC	2 cut(s)	439, 532
NspI	RCATGY	1 cut(s)	506
PagI	TCATGA	1 cut(s)	429
PcsI	WCGNNNNNNNCGW	1 cut(s)	402
PfeI	GAWTC	2 cut(s)	419, 565
PflFI	GACNNNGTC	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	124
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	206
Psp1406I	AACGTT	1 cut(s)	396
Psp5II	RGGWCCY	1 cut(s)	206
Psp6I	CCWGG	2 cut(s)	288, 319
PspGI	CCWGG	2 cut(s)	288, 319
PspN4I	GGNNCC	3 cut(s)	207, 208, 612
PspPI	GGNCC	4 cut(s)	26, 206, 370, 526
PspPPI	RGGWCCY	1 cut(s)	206
PstI	CTGCAG	2 cut(s)	34, 127
PsuI	RGATCY	1 cut(s)	115
PsyI	GACNNNGTC	1 cut(s)	204
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SaqAI	TTAA	5 cut(s)	108, 171, 377, 507, 630
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	1 cut(s)	115
Sau96I	GGNCC	4 cut(s)	26, 206, 370, 526
SbfI	CCTGCAGG	1 cut(s)	34
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	2 cut(s)	290, 321
SdaI	CCTGCAGG	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	576
SetI	ASST	7 cut(s)	18, 168, 243, 291, 399, 531, 630
SfaNI	GCATC	1 cut(s)	476
SfcI	CTRYAG	2 cut(s)	30, 123
SinI	GGWCC	3 cut(s)	206, 370, 526
Sse8387I	CCTGCAGG	1 cut(s)	34
Sse9I	AATT	3 cut(s)	494, 578, 617
SsiI	CCGC	1 cut(s)	500
SspMI	CTAG	1 cut(s)	17
StyD4I	CCNGG	2 cut(s)	288, 319
TaaI	ACNGT	2 cut(s)	77, 426
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	1 cut(s)	417
TaqII	GACCGA	1 cut(s)	449
TasI	AATT	3 cut(s)	494, 578, 617
TatI	WGTACW	1 cut(s)	225
TfiI	GAWTC	2 cut(s)	419, 565
Tru1I	TTAA	5 cut(s)	108, 171, 377, 507, 630
Tru9I	TTAA	5 cut(s)	108, 171, 377, 507, 630
TscAI	CASTG	3 cut(s)	43, 80, 460
TseFI	GTSAC	2 cut(s)	439, 532
TseI	GCWGC	1 cut(s)	122
Tsp45I	GTSAC	2 cut(s)	439, 532
TspDTI	ATGAA	1 cut(s)	418
TspRI	CASTG	3 cut(s)	43, 80, 460
Tth111I	GACNNNGTC	1 cut(s)	204
VpaK11BI	GGWCC	3 cut(s)	206, 370, 526
XceI	RCATGY	1 cut(s)	506
XmiI	GTMKAC	1 cut(s)	408
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.