AT4G13040

Ethylene-responsive transcription factor-like protein At4g13040

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003228
Physical Location & Seq
Forward (+)
7613213 .. 7615955
2743 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G13040.5

Sequence Viewer

Length: 681 bp
ATGGTGAGCTTACGAAGACGTAGGCTATTGGGTCTTTGTTGTGGACCAAATGGTTATGTGACACCACTTCCATTTTTAACTGCTGAGGAGATGATCACTGGGATTCCAAATCCTAATGCCAGAGCAGCTTATAATCCCGGGCCAGCAGAAACGGTTACAACGGTTATCGTGGAGAAAAAGGCTATTGAAGAAAGAAGCCGAAGAACTCGGTCAAAACATATGCATTTCAGGTCTGATTATTCAGATATCTCACCGGTTAATTCTGATTCCATCTCACCAAAATACCAGCCGCCGAAACGAAGAAAGCAGCATAGAAGAAAGCGAGTACATAACCAAGAACCATGTTTGATGAGAGGAGTCTACTACAAAAACATGAAATGGCAAGCCGCCATTAAAGTCGAGAAGAAACAAATCCACTTAGGCACTTTCTCTTCTCAAGAAGAGGCTGCTCGCTTATACGATAGGGCTGCTTTCATGTGTGGGAGGGAACCGAACTTTGAGCTCTCGGAAGAAGTTATACGAGAACTCAAACAGCAAAGCTGGGAAGAGTTCTTGAATTGCACACGCCGAACAATTACGAACAAAAAACCAAAGAGTAGGATAGAACATGAGGATACGAAGATCAATGCCAGCATGCCACATCAACCAGAAGAAGAAGAGCAAGATTCAGACAAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

226

Amino Acids

26.4

Weight (kDa)

9.51

Isoelectric Point (pI)

83.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 61 - 103 4.9e-07 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 132
AccI GTMKAC 1 cut(s) 360
AciI CCGC 2 cut(s) 290, 387
AfaI GTAC 1 cut(s) 327
AgeI ACCGGT 1 cut(s) 253
AgsI TTSAA 2 cut(s) 188, 556
AluBI AGCT 4 cut(s) 9, 128, 502, 540
AluI AGCT 4 cut(s) 9, 128, 502, 540
Alw21I GWGCWC 1 cut(s) 504
Ama87I CYCGRG 1 cut(s) 137
AoxI GGCC 1 cut(s) 140
ApeKI GCWGC 4 cut(s) 125, 307, 446, 467
AsiGI ACCGGT 1 cut(s) 253
AspS9I GGNCC 2 cut(s) 44, 140
AsuC2I CCSGG 2 cut(s) 138, 139
AsuHPI GGTGA 3 cut(s) 16, 243, 267
AvaI CYCGRG 1 cut(s) 137
AvaII GGWCC 1 cut(s) 44
BanII GRGCYC 1 cut(s) 504
BarI GAAGNNNNNNTAC 2 cut(s) 501, 533
BbsI GAAGAC 1 cut(s) 22
Bbv12I GWGCWC 1 cut(s) 504
BbvCI CCTCAGC 1 cut(s) 84
BbvI GCAGC 4 cut(s) 137, 319, 433, 454
BccI CCATC 1 cut(s) 278
BcgI CGANNNNNNTGC 2 cut(s) 449, 483
BciVI GTATCC 1 cut(s) 607
BclI TGATCA 1 cut(s) 93
BcnI CCSGG 2 cut(s) 138, 139
BfuI GTATCC 1 cut(s) 607
BisI GCNGC 6 cut(s) 126, 290, 308, 387, 447, 468
BlsI GCNGC 6 cut(s) 127, 291, 309, 388, 448, 469
Bme1390I CCNGG 2 cut(s) 138, 139
Bme18I GGWCC 1 cut(s) 44
BmeT110I CYCGRG 1 cut(s) 137
BmgT120I GGNCC 2 cut(s) 44, 140
BmiI GGNNCC 1 cut(s) 489
BmrFI CCNGG 2 cut(s) 138, 139
BmrI ACTGGG 1 cut(s) 108
BmuI ACTGGG 1 cut(s) 108
BpiI GAAGAC 1 cut(s) 22
Bpu10I CCTNAGC 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 420
BpuMI CCSGG 2 cut(s) 138, 139
BsaJI CCNNGG 1 cut(s) 137
BsaWI WCCGGW 1 cut(s) 253
Bse118I RCCGGY 1 cut(s) 253
Bse1I ACTGG 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 137
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 103
BseRI GAGGAG 2 cut(s) 101, 369
BseXI GCAGC 4 cut(s) 137, 319, 433, 454
BseYI CCCAGC 1 cut(s) 540
BshFI GGCC 1 cut(s) 142
BshTI ACCGGT 1 cut(s) 253
BsiHKAI GWGCWC 1 cut(s) 504
BsiHKCI CYCGRG 1 cut(s) 137
BsiSI CCGG 2 cut(s) 138, 254
BsnI GGCC 1 cut(s) 142
BsoBI CYCGRG 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 504
Bsp143I GATC 2 cut(s) 93, 621
BspACI CCGC 2 cut(s) 290, 387
BspANI GGCC 1 cut(s) 142
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 489
BspQI GCTCTTC 1 cut(s) 651
BsrFI RCCGGY 1 cut(s) 253
BsrI ACTGG 1 cut(s) 103
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 137
BssMI GATC 2 cut(s) 93, 621
Bst4CI ACNGT 2 cut(s) 154, 163
Bst6I CTCTTC 4 cut(s) 435, 436, 540, 651
BstC8I GCNNGC 5 cut(s) 144, 384, 451, 631, 635
BstDEI CTNAG 2 cut(s) 84, 418
BstKTI GATC 2 cut(s) 96, 624
BstMBI GATC 2 cut(s) 93, 621
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstNSI RCATGY 1 cut(s) 637
BstSCI CCNGG 2 cut(s) 136, 137
BstV1I GCAGC 4 cut(s) 137, 319, 433, 454
BstV2I GAAGAC 1 cut(s) 22
BsuI GTATCC 1 cut(s) 607
BsuRI GGCC 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 96
Cac8I GCNNGC 5 cut(s) 144, 384, 451, 631, 635
Cfr10I RCCGGY 1 cut(s) 253
Cfr13I GGNCC 2 cut(s) 44, 140
Cfr9I CCCGGG 1 cut(s) 137
Csp6I GTAC 1 cut(s) 326
CspAI ACCGGT 1 cut(s) 253
CviAII CATG 5 cut(s) 342, 373, 475, 608, 634
CviQI GTAC 1 cut(s) 326
DdeI CTNAG 2 cut(s) 84, 418
DpnI GATC 2 cut(s) 95, 623
DpnII GATC 2 cut(s) 93, 621
Eam1104I CTCTTC 4 cut(s) 435, 436, 540, 651
EarI CTCTTC 4 cut(s) 435, 436, 540, 651
Ecl136II GAGCTC 1 cut(s) 502
Eco24I GRGCYC 1 cut(s) 504
Eco32I GATATC 1 cut(s) 247
Eco47I GGWCC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 502
Eco88I CYCGRG 1 cut(s) 137
EcoICRI GAGCTC 1 cut(s) 502
EcoRV GATATC 1 cut(s) 247
EcoT22I ATGCAT 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 504
FaeI CATG 5 cut(s) 345, 376, 478, 611, 637
FatI CATG 5 cut(s) 341, 372, 474, 607, 633
FauNDI CATATG 1 cut(s) 219
FbaI TGATCA 1 cut(s) 93
FblI GTMKAC 1 cut(s) 360
Fnu4HI GCNGC 6 cut(s) 126, 290, 308, 387, 447, 468
FriOI GRGCYC 1 cut(s) 504
Fsp4HI GCNGC 6 cut(s) 126, 290, 308, 387, 447, 468
GluI GCNGC 6 cut(s) 126, 290, 308, 387, 447, 468
GsaI CCCAGC 1 cut(s) 544
HaeIII GGCC 1 cut(s) 142
HapII CCGG 2 cut(s) 138, 254
Hin1II CATG 5 cut(s) 345, 376, 478, 611, 637
HinfI GANTC 4 cut(s) 103, 266, 357, 665
HpaII CCGG 2 cut(s) 138, 254
HphI GGTGA 3 cut(s) 16, 243, 267
Hpy166II GTNNAC 2 cut(s) 44, 361
Hpy188I TCNGA 5 cut(s) 235, 244, 265, 508, 670
Hpy188III TCNNGA 3 cut(s) 400, 437, 553
Hpy8I GTNNAC 2 cut(s) 44, 361
HpyCH4III ACNGT 2 cut(s) 154, 163
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 2 cut(s) 223, 561
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 2 cut(s) 84, 418
HpySE526I ACGT 1 cut(s) 19
Hsp92II CATG 5 cut(s) 345, 376, 478, 611, 637
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 2 cut(s) 93, 621
LguI GCTCTTC 1 cut(s) 651
Lsp1109I GCAGC 4 cut(s) 137, 319, 433, 454
MaeII ACGT 1 cut(s) 19
MaeIII GTNAC 2 cut(s) 58, 154
MalI GATC 2 cut(s) 95, 623
MboI GATC 2 cut(s) 93, 621
MhlI GDGCHC 1 cut(s) 504
MluCI AATT 3 cut(s) 259, 556, 573
MlyI GAGTC 1 cut(s) 366
MnlI CCTC 5 cut(s) 79, 347, 436, 477, 604
Mph1103I ATGCAT 1 cut(s) 225
MseI TTAA 3 cut(s) 77, 258, 393
MspI CCGG 2 cut(s) 138, 254
MspR9I CCNGG 2 cut(s) 138, 139
MwoI GCNNNNNNNGC 1 cut(s) 125
NciI CCSGG 2 cut(s) 138, 139
NdeI CATATG 1 cut(s) 219
NdeII GATC 2 cut(s) 93, 621
NlaIII CATG 5 cut(s) 345, 376, 478, 611, 637
NlaIV GGNNCC 1 cut(s) 489
NmuCI GTSAC 1 cut(s) 58
NsiI ATGCAT 1 cut(s) 225
NspI RCATGY 1 cut(s) 637
PaeI GCATGC 1 cut(s) 637
PciSI GCTCTTC 1 cut(s) 651
PfeI GAWTC 3 cut(s) 103, 266, 665
PinAI ACCGGT 1 cut(s) 253
PkrI GCNGC 6 cut(s) 127, 291, 309, 388, 448, 469
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
PsiI TTATAA 1 cut(s) 132
Psp124BI GAGCTC 1 cut(s) 504
PspFI CCCAGC 1 cut(s) 540
PspN4I GGNNCC 1 cut(s) 489
PspPI GGNCC 2 cut(s) 44, 140
RsaI GTAC 1 cut(s) 327
RsaNI GTAC 1 cut(s) 326
SacI GAGCTC 1 cut(s) 504
SapI GCTCTTC 1 cut(s) 651
SaqAI TTAA 3 cut(s) 77, 258, 393
SatI GCNGC 6 cut(s) 126, 290, 308, 387, 447, 468
Sau3AI GATC 2 cut(s) 93, 621
Sau96I GGNCC 2 cut(s) 44, 140
SchI GAGTC 1 cut(s) 366
ScrFI CCNGG 2 cut(s) 138, 139
SduI GDGCHC 1 cut(s) 504
SetI ASST 6 cut(s) 11, 22, 130, 233, 504, 542
SinI GGWCC 1 cut(s) 44
SmaI CCCGGG 1 cut(s) 139
SmlI CTYRAG 1 cut(s) 435
SmoI CTYRAG 1 cut(s) 435
SphI GCATGC 1 cut(s) 637
Sse9I AATT 3 cut(s) 259, 556, 573
SsiI CCGC 2 cut(s) 290, 387
SstI GAGCTC 1 cut(s) 504
StyD4I CCNGG 2 cut(s) 136, 137
TaaI ACNGT 2 cut(s) 154, 163
TaiI ACGT 1 cut(s) 22
TaqI TCGA 1 cut(s) 399
TaqII GACCGA 1 cut(s) 198
TasI AATT 3 cut(s) 259, 556, 573
TatI WGTACW 1 cut(s) 325
TauI GCSGC 2 cut(s) 292, 389
TfiI GAWTC 3 cut(s) 103, 266, 665
Tru1I TTAA 3 cut(s) 77, 258, 393
Tru9I TTAA 3 cut(s) 77, 258, 393
TscAI CASTG 1 cut(s) 103
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 4 cut(s) 125, 307, 446, 467
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 2 cut(s) 389, 463
TspMI CCCGGG 1 cut(s) 137
TspRI CASTG 1 cut(s) 103
VpaK11BI GGWCC 1 cut(s) 44
XceI RCATGY 1 cut(s) 637
XmaI CCCGGG 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 360
Zsp2I ATGCAT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.