Rorug06G0160400

Ethylene-responsive transcription factor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003228
Physical Location & Seq
Forward (+)
22876524 .. 22877347
824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0160400.1

Sequence Viewer

Length: 519 bp
ATGGCTCGAACTACTATCCCAATCACATATGATACTTGGCCAAATGTTAAGGATTCACTTAAACAAATGATATGGAGTATGGTTCAGAAATCATTCATTGTGGATCCAAGAAGCAAGAAAGATGTCTTGAGTAGTGCAGGAAGGAAATGGAAATCATTCAAGAGCACTTTAACAACAAAATATATATTAAGGTATAAAGATCGACGGAGCCTCCTAAAGATAAAACCTGAAGAATATGAGTTCATTACTCAACCTCAGTGGGAAGCTTTTGTGAAATCTCGATTAACTCCTGAATTTTTGGAAAAACATGAGGATCACTCAAATAGACGAGCTTTGCATGAGTATGACCATCGAATGTCCAGGAAAGGTTATGCTAATTTGGAAGAGGAACTAAAACAGGAATTAGGGACTGAAGAAGATATTGATAGAGCCATCTTATGGAAGAAAGGGAGTGTTGATAAAGAGGGTAACTATTTAAGTGAGACAACCAAACAACGTGCTGAGAAAATTGTGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

172

Amino Acids

20.49

Weight (kDa)

9.43

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 86 - 169 4.9e-09 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 438
AclWI GGATC 3 cut(s) 98, 111, 321
AcoI YGGCCR 1 cut(s) 38
AcsI RAATTY 1 cut(s) 293
AcuI CTGAAG 2 cut(s) 249, 432
AfiI CCNNNNNNNGG 1 cut(s) 438
AgsI TTSAA 1 cut(s) 160
AjnI CCWGG 1 cut(s) 359
AluBI AGCT 2 cut(s) 266, 332
AluI AGCT 2 cut(s) 266, 332
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 1 cut(s) 476
AlwI GGATC 3 cut(s) 98, 111, 321
AoxI GGCC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 293
Asp700I GAANNNNTTC 2 cut(s) 92, 155
BalI TGGCCA 1 cut(s) 40
BamHI GGATCC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 167
BccI CCATC 2 cut(s) 357, 440
BciT130I CCWGG 1 cut(s) 361
BcoDI GTCTC 1 cut(s) 476
Bme1390I CCNGG 1 cut(s) 361
BmiI GGNNCC 2 cut(s) 105, 209
BmrFI CCNGG 1 cut(s) 361
BplI GAGNNNNNCTC 2 cut(s) 302, 334
BpuEI CTTGAG 1 cut(s) 148
BsaXI ACNNNNNCTCC 2 cut(s) 195, 225
Bsc4I CCNNNNNNNGG 1 cut(s) 438
BseBI CCWGG 1 cut(s) 361
BseLI CCNNNNNNNGG 1 cut(s) 438
BseMII CTCAG 2 cut(s) 269, 492
BsgI GTGCAG 1 cut(s) 156
BshFI GGCC 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 167
BslFI GGGAC 1 cut(s) 421
BslI CCNNNNNNNGG 1 cut(s) 438
BsmAI GTCTC 1 cut(s) 476
BsmFI GGGAC 1 cut(s) 421
BsnI GGCC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 3 cut(s) 103, 199, 313
BspANI GGCC 1 cut(s) 40
BspCNI CTCAG 2 cut(s) 268, 493
BspLI GGNNCC 2 cut(s) 105, 209
BspPI GGATC 3 cut(s) 98, 111, 321
BssMI GATC 3 cut(s) 103, 199, 313
Bst2UI CCWGG 1 cut(s) 361
Bst6I CTCTTC 1 cut(s) 378
BstDEI CTNAG 2 cut(s) 255, 501
BstKTI GATC 3 cut(s) 106, 202, 316
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 3 cut(s) 103, 199, 313
BstNI CCWGG 1 cut(s) 361
BstSCI CCNGG 1 cut(s) 359
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BsuRI GGCC 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 263
CspCI CAANNNNNGTGG 2 cut(s) 239, 274
CviAII CATG 2 cut(s) 308, 338
CviJI RGCY 6 cut(s) 5, 40, 210, 266, 332, 431
CviKI_1 RGCY 6 cut(s) 5, 40, 210, 266, 332, 431
DdeI CTNAG 2 cut(s) 255, 501
DpnI GATC 3 cut(s) 105, 201, 315
DpnII GATC 3 cut(s) 103, 199, 313
EaeI YGGCCR 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
Eco57I CTGAAG 2 cut(s) 249, 432
EcoRII CCWGG 1 cut(s) 359
FaeI CATG 2 cut(s) 311, 341
FaqI GGGAC 1 cut(s) 421
FatI CATG 2 cut(s) 307, 337
FauNDI CATATG 1 cut(s) 28
HaeIII GGCC 1 cut(s) 40
Hin1II CATG 2 cut(s) 311, 341
HindIII AAGCTT 1 cut(s) 264
HinfI GANTC 1 cut(s) 53
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 4 cut(s) 127, 160, 279, 290
Hpy99I CGWCG 1 cut(s) 207
HpyAV CCTTC 1 cut(s) 135
HpyCH4IV ACGT 1 cut(s) 496
HpyCH4V TGCA 2 cut(s) 137, 337
HpyF3I CTNAG 2 cut(s) 255, 501
HpySE526I ACGT 1 cut(s) 496
Hsp92II CATG 2 cut(s) 311, 341
Kzo9I GATC 3 cut(s) 103, 199, 313
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 6 cut(s) 123, 240, 303, 346, 373, 383
MaeII ACGT 1 cut(s) 496
MaeIII GTNAC 1 cut(s) 467
MalI GATC 3 cut(s) 105, 201, 315
MboI GATC 3 cut(s) 103, 199, 313
MboII GAAGA 5 cut(s) 242, 395, 425, 428, 454
MflI RGATCY 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 167
MlsI TGGCCA 1 cut(s) 40
MluCI AATT 4 cut(s) 293, 376, 401, 507
MluNI TGGCCA 1 cut(s) 40
MnlI CCTC 5 cut(s) 221, 264, 304, 379, 457
Mox20I TGGCCA 1 cut(s) 40
MroXI GAANNNNTTC 2 cut(s) 92, 155
MscI TGGCCA 1 cut(s) 40
MseI TTAA 6 cut(s) 48, 60, 170, 188, 284, 476
MslI CAYNNNNRTG 1 cut(s) 342
Msp20I TGGCCA 1 cut(s) 40
MspR9I CCNGG 1 cut(s) 361
MvaI CCWGG 1 cut(s) 361
NdeI CATATG 1 cut(s) 28
NdeII GATC 3 cut(s) 103, 199, 313
NlaIII CATG 2 cut(s) 311, 341
NlaIV GGNNCC 2 cut(s) 105, 209
PdmI GAANNNNTTC 2 cut(s) 92, 155
PfeI GAWTC 1 cut(s) 53
PflMI CCANNNNNTGG 1 cut(s) 438
PfoI TCCNGGA 1 cut(s) 359
Psp6I CCWGG 1 cut(s) 359
PspGI CCWGG 1 cut(s) 359
PspN4I GGNNCC 2 cut(s) 105, 209
PsuI RGATCY 1 cut(s) 103
RseI CAYNNNNRTG 1 cut(s) 342
SaqAI TTAA 6 cut(s) 48, 60, 170, 188, 284, 476
Sau3AI GATC 3 cut(s) 103, 199, 313
ScrFI CCNGG 1 cut(s) 361
SduI GDGCHC 1 cut(s) 167
SetI ASST 7 cut(s) 194, 229, 256, 268, 334, 370, 499
SmiMI CAYNNNNRTG 1 cut(s) 342
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
Sse9I AATT 4 cut(s) 293, 376, 401, 507
StyD4I CCNGG 1 cut(s) 359
TaiI ACGT 1 cut(s) 499
TaqI TCGA 4 cut(s) 7, 202, 280, 352
TasI AATT 4 cut(s) 293, 376, 401, 507
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 6 cut(s) 48, 60, 170, 188, 284, 476
Tru9I TTAA 6 cut(s) 48, 60, 170, 188, 284, 476
TscAI CASTG 1 cut(s) 263
TspDTI ATGAA 2 cut(s) 85, 232
TspGWI ACGGA 1 cut(s) 220
TspRI CASTG 1 cut(s) 263
Van91I CCANNNNNTGG 1 cut(s) 438
XapI RAATTY 1 cut(s) 293
XmnI GAANNNNTTC 2 cut(s) 92, 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.