Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003228

Physical Location & Seq

Genomic Coordinates Forward (+)

17304532 .. 17307103

Gene Structure 2572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g13780.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGTGAGCTTACGAAGGCGCAGACTACTGGGATTGGGACTATGCTGTGAGATACCTCCTGTTCTAGATCCACTTCCTAGGGTTGTCAACAATGGAACCACTCCTCAAAATTTCACCCGTACAAATCCTGTCAGTGTGCATCCCATGCCTTCAAATCATGCAAATCAACCAGATGGGAATACCATTGTGAAAGCAAAACCTCGATCCGTAACTGCATCTGGTTCTAGCTTATCCAAAGAGCAGCACGATGTGGCAGGGCCAACAATCAAACGCAGAAAGCGACATCGCAGAAAGCATGCTCAAAACCAGGAACCATGTCTAATGAGAGGTGTCTATTTTAAGAATATGAAGTGGCAGGCAGCAATAAAAGTTGACAAGAAACAAATCCACTTAGGCACTGTTGGTTCCCAAGAAGAGGCTGCTCATTTGTATGACAGGGCTGCTTTCATGTGTGGGAGGGAACCAAATTTCGAGCTTTCTGAGGGGGAGAAGCAAGAACTCAGGAAATTCAAGTGGGATGAATTCTTGGTCATGACTCGTCATGCAATTACTAATAAAAAACACAGGAGGAGAAGGCAAGGGGCAGAGTCAGAGAAGAGGTCCGAGAGTCCTCAATTGGAAGACGGCGACTGGGAGGATGACAAAGAAGAAGTGAATGGCCTTTCAGCTTCAGAAGGTGCAGAGCAAGACATGTTGGACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

235

Amino Acids

26.64

Weight (kDa)

9.41

Isoelectric Point (pI)

60.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040
fragaria_vesca	FvH4_2g18520
malus_domestica	MD05G1171400.v1.1 MD10G1039600.v1.1 MD10G1159600.v1.1
prunus_persica	Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1
pyrus_communis	pycom05g15810 pycom10g13780
rosa_chinensis	RchiOBHm_Chr3g0472871 RchiOBHm_Chr6g0284081
rosa_laevigata	RLG00000012771
rosa_multiflora	Rmu_sc0015649.1_g000011
rosa_roxburghii	Rroxscaffold_7G00184950
rosa_rugosa	Rorug04G0064700 Rorug06G0160300 Rorug06G0160400 Rorug06G0160500
rosa_samantha	Rh5BG215100 Rh5BG429800 Rh5CG453400 Rh5DG270800 Rh6AG273300 Rh6BG274000 Rh6CG275400 Rh6DG268400
rosa_wichuraiana	Rw6G023520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	62, 198
AcsI	RAATTY	4 cut(s)	109, 466, 506, 521
AcuI	CTGAAG	1 cut(s)	654
AdeI	CACNNNGTG	1 cut(s)	250
AfaI	GTAC	1 cut(s)	121
AfiI	CCNNNNNNNGG	1 cut(s)	415
AflIII	ACRYGT	1 cut(s)	690
AgsI	TTSAA	2 cut(s)	153, 511
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	4 cut(s)	9, 228, 475, 668
AluI	AGCT	4 cut(s)	9, 228, 475, 668
AlwI	GGATC	2 cut(s)	62, 198
AoxI	GGCC	2 cut(s)	257, 658
ApeKI	GCWGC	4 cut(s)	241, 359, 419, 440
ApoI	RAATTY	4 cut(s)	109, 466, 506, 521
AspA2I	CCTAGG	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	2 cut(s)	257, 600
AsuHPI	GGTGA	2 cut(s)	16, 106
AvaII	GGWCC	1 cut(s)	600
AvrII	CCTAGG	1 cut(s)	77
BbsI	GAAGAC	1 cut(s)	627
BbvI	GCAGC	4 cut(s)	253, 371, 406, 427
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	1 cut(s)	640
BciT130I	CCWGG	1 cut(s)	308
BfaI	CTAG	3 cut(s)	65, 78, 225
BisI	GCNGC	4 cut(s)	242, 360, 420, 441
BlnI	CCTAGG	1 cut(s)	77
BlsI	GCNGC	4 cut(s)	243, 361, 421, 442
Bme1390I	CCNGG	1 cut(s)	308
Bme18I	GGWCC	1 cut(s)	600
BmgT120I	GGNCC	2 cut(s)	257, 600
BmiI	GGNNCC	4 cut(s)	97, 312, 406, 462
BmrFI	CCNGG	1 cut(s)	308
BmrI	ACTGGG	2 cut(s)	38, 640
BmsI	GCATC	2 cut(s)	148, 224
BmuI	ACTGGG	2 cut(s)	38, 640
BpiI	GAAGAC	1 cut(s)	627
BsaJI	CCNNGG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse1I	ACTGG	2 cut(s)	33, 635
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	1 cut(s)	77
BseGI	GGATG	3 cut(s)	139, 523, 643
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseMII	CTCAG	2 cut(s)	471, 514
BseNI	ACTGG	2 cut(s)	33, 635
BseRI	GAGGAG	2 cut(s)	93, 583
BseXI	GCAGC	4 cut(s)	253, 371, 406, 427
BsgI	GTGCAG	1 cut(s)	699
BshFI	GGCC	2 cut(s)	259, 660
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmFI	GGGAC	1 cut(s)	51
BsnI	GGCC	2 cut(s)	259, 660
Bsp143I	GATC	2 cut(s)	67, 203
BspANI	GGCC	2 cut(s)	259, 660
BspCNI	CTCAG	2 cut(s)	472, 513
BspHI	TCATGA	1 cut(s)	531
BspLI	GGNNCC	4 cut(s)	97, 312, 406, 462
BspPI	GGATC	2 cut(s)	62, 198
BsrI	ACTGG	2 cut(s)	33, 635
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	2 cut(s)	67, 203
BssT1I	CCWWGG	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	1 cut(s)	400
Bst6I	CTCTTC	2 cut(s)	408, 590
BstAPI	GCANNNNNTGC	1 cut(s)	145
BstC8I	GCNNGC	2 cut(s)	297, 357
BstDEI	CTNAG	3 cut(s)	391, 480, 500
BstF5I	GGATG	3 cut(s)	139, 523, 643
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	2 cut(s)	70, 206
BstMBI	GATC	2 cut(s)	67, 203
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNI	CCWGG	1 cut(s)	308
BstNSI	RCATGY	2 cut(s)	299, 694
BstSCI	CCNGG	1 cut(s)	306
BstV1I	GCAGC	4 cut(s)	253, 371, 406, 427
BstV2I	GAAGAC	1 cut(s)	627
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuRI	GGCC	2 cut(s)	259, 660
BtgZI	GCGATG	1 cut(s)	269
BtsCI	GGATG	3 cut(s)	139, 523, 643
BtsIMutI	CAGTG	2 cut(s)	139, 396
Cac8I	GCNNGC	2 cut(s)	297, 357
CciI	TCATGA	1 cut(s)	531
CfoI	GCGC	1 cut(s)	21
Cfr13I	GGNCC	2 cut(s)	257, 600
Csp6I	GTAC	1 cut(s)	120
CviAII	CATG	8 cut(s)	145, 158, 296, 315, 448, 532, 542, 691
CviJI	RGCY	8 cut(s)	9, 228, 259, 419, 440, 475, 660, 668
CviKI_1	RGCY	8 cut(s)	9, 228, 259, 419, 440, 475, 660, 668
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	3 cut(s)	391, 480, 500
DpnI	GATC	2 cut(s)	69, 205
DpnII	GATC	2 cut(s)	67, 203
DraIII	CACNNNGTG	1 cut(s)	250
Eam1104I	CTCTTC	2 cut(s)	408, 590
EarI	CTCTTC	2 cut(s)	408, 590
Eco130I	CCWWGG	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	600
Eco57I	CTGAAG	1 cut(s)	654
EcoRI	GAATTC	1 cut(s)	521
EcoRII	CCWGG	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	8 cut(s)	148, 161, 299, 318, 451, 535, 545, 694
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	8 cut(s)	144, 157, 295, 314, 447, 531, 541, 690
Fnu4HI	GCNGC	4 cut(s)	242, 360, 420, 441
FokI	GGATG	3 cut(s)	126, 530, 650
Fsp4HI	GCNGC	4 cut(s)	242, 360, 420, 441
FspBI	CTAG	3 cut(s)	65, 78, 225
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	4 cut(s)	242, 360, 420, 441
HaeIII	GGCC	2 cut(s)	259, 660
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	8 cut(s)	148, 161, 299, 318, 451, 535, 545, 694
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HincII	GTYRAC	2 cut(s)	88, 373
HindII	GTYRAC	2 cut(s)	88, 373
HinfI	GANTC	4 cut(s)	535, 587, 607, 698
HphI	GGTGA	2 cut(s)	16, 106
Hpy166II	GTNNAC	2 cut(s)	88, 373
Hpy188I	TCNGA	4 cut(s)	481, 592, 604, 673
Hpy188III	TCNNGA	4 cut(s)	65, 502, 532, 702
Hpy8I	GTNNAC	2 cut(s)	88, 373
HpyAV	CCTTC	4 cut(s)	9, 159, 567, 668
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4V	TGCA	5 cut(s)	139, 161, 215, 545, 680
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	3 cut(s)	391, 480, 500
Hsp92II	CATG	8 cut(s)	148, 161, 299, 318, 451, 535, 545, 694
HspAI	GCGC	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	67, 203
Lsp1109I	GCAGC	4 cut(s)	253, 371, 406, 427
LweI	GCATC	2 cut(s)	148, 224
MaeI	CTAG	3 cut(s)	65, 78, 225
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	2 cut(s)	69, 205
MboI	GATC	2 cut(s)	67, 203
MboII	GAAGA	4 cut(s)	425, 607, 632, 659
MfeI	CAATTG	1 cut(s)	614
MflI	RGATCY	1 cut(s)	67
MluCI	AATT	6 cut(s)	109, 466, 506, 521, 546, 614
MlyI	GAGTC	4 cut(s)	529, 596, 616, 692
MmeI	TCCRAC	1 cut(s)	675
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	429
MspR9I	CCNGG	1 cut(s)	308
MunI	CAATTG	1 cut(s)	614
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	1 cut(s)	145
NdeII	GATC	2 cut(s)	67, 203
NlaIII	CATG	8 cut(s)	148, 161, 299, 318, 451, 535, 545, 694
NlaIV	GGNNCC	4 cut(s)	97, 312, 406, 462
NspI	RCATGY	2 cut(s)	299, 694
PaeI	GCATGC	1 cut(s)	299
PagI	TCATGA	1 cut(s)	531
PciI	ACATGT	1 cut(s)	690
PcsI	WCGNNNNNNNCGW	1 cut(s)	277
PkrI	GCNGC	4 cut(s)	243, 361, 421, 442
PleI	GAGTC	4 cut(s)	529, 595, 615, 692
PpsI	GAGTC	4 cut(s)	529, 595, 615, 692
PscI	ACATGT	1 cut(s)	690
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	4 cut(s)	97, 312, 406, 462
PspPI	GGNCC	2 cut(s)	257, 600
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
RseI	CAYNNNNRTG	1 cut(s)	429
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	4 cut(s)	242, 360, 420, 441
Sau3AI	GATC	2 cut(s)	67, 203
Sau96I	GGNCC	2 cut(s)	257, 600
SchI	GAGTC	4 cut(s)	529, 596, 616, 692
ScrFI	CCNGG	1 cut(s)	308
SetI	ASST	9 cut(s)	11, 58, 202, 230, 331, 477, 602, 670, 679
SfaNI	GCATC	2 cut(s)	148, 224
SinI	GGWCC	1 cut(s)	600
SmiMI	CAYNNNNRTG	1 cut(s)	429
SphI	GCATGC	1 cut(s)	299
Sse9I	AATT	6 cut(s)	109, 466, 506, 521, 546, 614
SspMI	CTAG	3 cut(s)	65, 78, 225
StyD4I	CCNGG	1 cut(s)	306
StyI	CCWWGG	1 cut(s)	77
TaaI	ACNGT	1 cut(s)	400
TaqI	TCGA	2 cut(s)	202, 471
TasI	AATT	6 cut(s)	109, 466, 506, 521, 546, 614
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	2 cut(s)	139, 403
TseI	GCWGC	4 cut(s)	241, 359, 419, 440
TspDTI	ATGAA	3 cut(s)	362, 436, 534
TspGWI	ACGGA	1 cut(s)	196
TspRI	CASTG	2 cut(s)	139, 403
VpaK11BI	GGWCC	1 cut(s)	600
XapI	RAATTY	4 cut(s)	109, 466, 506, 521
XbaI	TCTAGA	1 cut(s)	64
XceI	RCATGY	2 cut(s)	299, 694
XmaJI	CCTAGG	1 cut(s)	77
XspI	CTAG	3 cut(s)	65, 78, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.