Rorug06G0160500

Ethylene-responsive transcription factor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003228
Physical Location & Seq
Reverse (-)
22886329 .. 22894632
8304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0160500.1

Sequence Viewer

Length: 1149 bp
ATGCAGCGAGATGGAGTTCCTCTTTCTGTTCCTCCATTGCGGATTCTGCCTGAGCCCCTGGTTGCTAGGTGCATTTATTCTGGCAAAGGTTATATGATTCCTCTGAATCATTGTATGAGCTTTTCTGACTTGTATGAAGACGTTTTCCGTACGTTCCAGTTTTTGCCAAGAGATGTTATTGAGCTTCAGTATTCACTACCGGGGTGTGAAATATGTTTTCTTTGTTCCGATCGTGATTTCCAGATGCTGTTCTACGGTGCTAGAATACATAAGTTAGAATGTGTTGAGATTTCTGTTTTAAAGATTGGTGGAAGTTGCAGCAATACGTGTTCAGTGGATATTCGTTCGGGAGGTGTGGATGAGGATGATTATTTGGGGGATGCATTTAGGATTGAAGTTCACAAGTCGTATTTGTCTAATGAGTGGAGTTCCTATATTGATCATGTTGGGGATAAGTTTCATGATGCAGCTGATCTCCGTGAGAAACTCAGGAAGTATGCAATTGTAGTTGGTTTCAAGTTTGTGTTTTTGAGAAACGATTTGGACCGTATTCATGTGGTTTGTTCAAATGTTGGAACCGAAGGCTGTGATTGGCGTCTTCGCGCTATTTCATCATCTCAAAGTGGTTGCCTTTATATAACAGAGTTGAATAATATTCACGCTTGTAAAGGTGTAGTTAGGACTCAAAAGCACAAGCTTCTGGGATCCAAGGTTGTGAAGACTTGCATTGCTGCTGATGTTAGCTACAATCTTTCCCTGAAGCCAAGGGAAATTATGAGTAAATTCAAATCAACTTATGGTTTTGATATTACCTACAAGGTTGCCTTGAAAGCGAAGCAAAGGGCTACGGAAGCGATTTATGGTTCTGATGCAGATTCATTCAGCAAGTTATCTTGGTATAAGGAAGCCGTTTTGGAGAGTAATCCGGGCTCTTCTTTTGTCTTGGAAGTTGACCCATCCGCTAATCGTTTTCATAGGCTTTTAGTATCATATGGAGGTTGTATTGAAGGATTCCAATTATGTTTACCTGTGTTGTATGTTGATGGAACGTTTGGTAAAAGCATTTACAAGGGTCAGATTCTTTCTGCAACTGGAAGGAATGGAAATCAAGAGGGTGCCTTATTTGTTATTGAATTGTTGAATGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

382

Amino Acids

42.82

Weight (kDa)

7.06

Isoelectric Point (pI)

38.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DBD_Tnp_Mut PF03108 148 - 209 9.3e-10 MuDR family transposase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1115
AccII CGCG 1 cut(s) 603
AciI CCGC 2 cut(s) 40, 960
AclI AACGTT 1 cut(s) 1049
AclWI GGATC 2 cut(s) 699, 712
AcsI RAATTY 1 cut(s) 782
AcuI CTGAAG 2 cut(s) 170, 779
AcyI GRCGYC 1 cut(s) 595
AfaI GTAC 1 cut(s) 151
AflIII ACRYGT 1 cut(s) 326
AgsI TTSAA 9 cut(s) 395, 517, 567, 649, 787, 829, 1007, 1133, 1141
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 5 cut(s) 120, 184, 470, 697, 744
AluI AGCT 5 cut(s) 120, 184, 470, 697, 744
AlwI GGATC 2 cut(s) 699, 712
AlwNI CAGNNNCTG 1 cut(s) 247
ApeKI GCWGC 4 cut(s) 4, 318, 467, 731
ApoI RAATTY 1 cut(s) 782
AspLEI GCGC 1 cut(s) 605
AspS9I GGNCC 1 cut(s) 544
AsuC2I CCSGG 2 cut(s) 201, 927
AvaII GGWCC 1 cut(s) 544
BamHI GGATCC 1 cut(s) 704
BanI GGYRCC 1 cut(s) 1115
BanII GRGCYC 2 cut(s) 57, 932
BbsI GAAGAC 3 cut(s) 144, 590, 725
BbvI GCAGC 4 cut(s) 16, 330, 479, 718
BccI CCATC 3 cut(s) 5, 964, 1037
BceAI ACGGC 1 cut(s) 893
BciT130I CCWGG 1 cut(s) 59
BclI TGATCA 1 cut(s) 439
BcnI CCSGG 2 cut(s) 201, 927
BfaI CTAG 2 cut(s) 66, 261
BisI GCNGC 4 cut(s) 5, 319, 468, 732
BlsI GCNGC 4 cut(s) 6, 320, 469, 733
Bme1390I CCNGG 3 cut(s) 59, 201, 927
Bme18I GGWCC 1 cut(s) 544
BmgT120I GGNCC 1 cut(s) 544
BmiI GGNNCC 3 cut(s) 577, 706, 1117
BmrFI CCNGG 3 cut(s) 59, 201, 927
BmsI GCATC 4 cut(s) 234, 370, 454, 859
BpiI GAAGAC 3 cut(s) 144, 590, 725
Bpu10I CCTNAGC 1 cut(s) 51
BpuMI CCSGG 2 cut(s) 201, 927
BsaAI YACGTR 1 cut(s) 327
BsaHI GRCGYC 1 cut(s) 595
BsaJI CCNNGG 4 cut(s) 57, 200, 708, 764
Bse1I ACTGG 2 cut(s) 157, 1096
Bse3DI GCAATG 2 cut(s) 35, 726
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 4 cut(s) 57, 200, 708, 764
BseGI GGATG 4 cut(s) 364, 370, 385, 956
BseMI GCAATG 2 cut(s) 35, 726
BseMII CTCAG 2 cut(s) 42, 502
BseNI ACTGG 2 cut(s) 157, 1096
BseXI GCAGC 4 cut(s) 16, 330, 479, 718
Bsh1236I CGCG 1 cut(s) 603
Bsh1285I CGRYCG 1 cut(s) 232
BshNI GGYRCC 1 cut(s) 1115
BsiEI CGRYCG 1 cut(s) 232
BsiSI CCGG 2 cut(s) 200, 926
BsiWI CGTACG 1 cut(s) 149
BsmI GAATGC 1 cut(s) 1147
Bsp1286I GDGCHC 2 cut(s) 57, 932
Bsp143I GATC 4 cut(s) 229, 439, 472, 704
BspACI CCGC 2 cut(s) 40, 960
BspCNI CTCAG 2 cut(s) 43, 501
BspFNI CGCG 1 cut(s) 603
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 3 cut(s) 577, 706, 1117
BspPI GGATC 2 cut(s) 699, 712
BspQI GCTCTTC 1 cut(s) 937
BspT107I GGYRCC 1 cut(s) 1115
BsrDI GCAATG 2 cut(s) 35, 726
BsrI ACTGG 2 cut(s) 157, 1096
BssECI CCNNGG 4 cut(s) 57, 200, 708, 764
BssMI GATC 4 cut(s) 229, 439, 472, 704
BssNI GRCGYC 1 cut(s) 595
BssT1I CCWWGG 2 cut(s) 708, 764
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 2 cut(s) 257, 548
Bst6I CTCTTC 1 cut(s) 937
BstACI GRCGYC 1 cut(s) 595
BstBAI YACGTR 1 cut(s) 327
BstDEI CTNAG 2 cut(s) 51, 488
BstF5I GGATG 4 cut(s) 364, 370, 385, 956
BstFNI CGCG 1 cut(s) 603
BstHHI GCGC 1 cut(s) 605
BstKTI GATC 4 cut(s) 232, 442, 475, 707
BstMBI GATC 4 cut(s) 229, 439, 472, 704
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 3 cut(s) 46, 830, 851
BstNI CCWGG 1 cut(s) 59
BstSCI CCNGG 3 cut(s) 57, 199, 925
BstUI CGCG 1 cut(s) 603
BstV1I GCAGC 4 cut(s) 16, 330, 479, 718
BstV2I GAAGAC 3 cut(s) 144, 590, 725
BstX2I RGATCY 1 cut(s) 704
BstYI RGATCY 1 cut(s) 704
BtsCI GGATG 4 cut(s) 364, 370, 385, 956
BtsIMutI CAGTG 1 cut(s) 339
CaiI CAGNNNCTG 1 cut(s) 247
CciI TCATGA 1 cut(s) 460
CfoI GCGC 1 cut(s) 605
Cfr13I GGNCC 1 cut(s) 544
CseI GACGC 1 cut(s) 584
Csp6I GTAC 1 cut(s) 150
CviAII CATG 3 cut(s) 443, 461, 554
CviQI GTAC 1 cut(s) 150
DdeI CTNAG 2 cut(s) 51, 488
DpnI GATC 4 cut(s) 231, 441, 474, 706
DpnII GATC 4 cut(s) 229, 439, 472, 704
DraI TTTAAA 1 cut(s) 300
Eam1104I CTCTTC 1 cut(s) 937
EarI CTCTTC 1 cut(s) 937
Eco130I CCWWGG 2 cut(s) 708, 764
Eco24I GRGCYC 2 cut(s) 57, 932
Eco47I GGWCC 1 cut(s) 544
Eco57I CTGAAG 2 cut(s) 170, 779
EcoRII CCWGG 1 cut(s) 57
EcoT14I CCWWGG 2 cut(s) 708, 764
EcoT22I ATGCAT 1 cut(s) 385
EcoT38I GRGCYC 2 cut(s) 57, 932
ErhI CCWWGG 2 cut(s) 708, 764
FaeI CATG 3 cut(s) 446, 464, 557
FalI AAGNNNNNCTT 2 cut(s) 809, 841
FatI CATG 3 cut(s) 442, 460, 553
FauNDI CATATG 1 cut(s) 991
FbaI TGATCA 1 cut(s) 439
Fnu4HI GCNGC 4 cut(s) 5, 319, 468, 732
FokI GGATG 4 cut(s) 371, 377, 392, 943
FriOI GRGCYC 2 cut(s) 57, 932
Fsp4HI GCNGC 4 cut(s) 5, 319, 468, 732
FspBI CTAG 2 cut(s) 66, 261
GlaI GCGC 1 cut(s) 604
GluI GCNGC 4 cut(s) 5, 319, 468, 732
HapII CCGG 2 cut(s) 200, 926
HgaI GACGC 1 cut(s) 584
HhaI GCGC 1 cut(s) 605
Hin1I GRCGYC 1 cut(s) 595
Hin1II CATG 3 cut(s) 446, 464, 557
Hin6I GCGC 1 cut(s) 603
HinP1I GCGC 1 cut(s) 603
HincII GTYRAC 1 cut(s) 952
HindII GTYRAC 1 cut(s) 952
HindIII AAGCTT 1 cut(s) 695
HinfI GANTC 7 cut(s) 43, 97, 106, 682, 875, 1011, 1078
HpaII CCGG 2 cut(s) 200, 926
Hpy166II GTNNAC 3 cut(s) 400, 952, 1025
Hpy188I TCNGA 5 cut(s) 105, 127, 229, 868, 1077
Hpy188III TCNNGA 6 cut(s) 233, 241, 348, 461, 490, 1109
Hpy8I GTNNAC 3 cut(s) 400, 952, 1025
HpyAV CCTTC 3 cut(s) 575, 1001, 1089
HpyCH4III ACNGT 2 cut(s) 257, 548
HpyCH4IV ACGT 4 cut(s) 141, 152, 326, 1049
HpyCH4V TGCA 9 cut(s) 4, 72, 318, 383, 467, 500, 726, 872, 1088
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 830, 851
HpyF3I CTNAG 2 cut(s) 51, 488
HpySE526I ACGT 4 cut(s) 141, 152, 326, 1049
Hsp92I GRCGYC 1 cut(s) 595
Hsp92II CATG 3 cut(s) 446, 464, 557
HspAI GCGC 1 cut(s) 603
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 4 cut(s) 229, 439, 472, 704
LguI GCTCTTC 1 cut(s) 937
Lsp1109I GCAGC 4 cut(s) 16, 330, 479, 718
LweI GCATC 4 cut(s) 234, 370, 454, 859
MaeI CTAG 2 cut(s) 66, 261
MaeII ACGT 4 cut(s) 141, 152, 326, 1049
MalI GATC 4 cut(s) 231, 441, 474, 706
MboI GATC 4 cut(s) 229, 439, 472, 704
MboII GAAGA 4 cut(s) 149, 590, 730, 924
MfeI CAATTG 1 cut(s) 501
MflI RGATCY 1 cut(s) 704
MhlI GDGCHC 2 cut(s) 57, 932
MluCI AATT 5 cut(s) 501, 771, 782, 1016, 1133
MlyI GAGTC 1 cut(s) 676
MmeI TCCRAC 1 cut(s) 553
MnlI CCTC 7 cut(s) 30, 42, 111, 344, 355, 989, 1105
Mph1103I ATGCAT 1 cut(s) 385
MseI TTAA 1 cut(s) 299
MspA1I CMGCKG 1 cut(s) 470
MspI CCGG 2 cut(s) 200, 926
MspR9I CCNGG 3 cut(s) 59, 201, 927
MunI CAATTG 1 cut(s) 501
Mva1269I GAATGC 1 cut(s) 1147
MvaI CCWGG 1 cut(s) 59
MvnI CGCG 1 cut(s) 603
MwoI GCNNNNNNNGC 3 cut(s) 46, 830, 851
NciI CCSGG 2 cut(s) 201, 927
NdeI CATATG 1 cut(s) 991
NdeII GATC 4 cut(s) 229, 439, 472, 704
NlaIII CATG 3 cut(s) 446, 464, 557
NlaIV GGNNCC 3 cut(s) 577, 706, 1117
NsiI ATGCAT 1 cut(s) 385
PagI TCATGA 1 cut(s) 460
PciSI GCTCTTC 1 cut(s) 937
PctI GAATGC 1 cut(s) 1147
PfeI GAWTC 6 cut(s) 43, 97, 106, 875, 1011, 1078
Pfl23II CGTACG 1 cut(s) 149
PkrI GCNGC 4 cut(s) 6, 320, 469, 733
Ple19I CGATCG 1 cut(s) 232
PleI GAGTC 1 cut(s) 676
PpsI GAGTC 1 cut(s) 676
Ppu21I YACGTR 1 cut(s) 327
Psp1406I AACGTT 1 cut(s) 1049
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspLI CGTACG 1 cut(s) 149
PspN4I GGNNCC 3 cut(s) 577, 706, 1117
PspPI GGNCC 1 cut(s) 544
PstNI CAGNNNCTG 1 cut(s) 247
PsuI RGATCY 1 cut(s) 704
PvuI CGATCG 1 cut(s) 232
PvuII CAGCTG 1 cut(s) 470
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
SapI GCTCTTC 1 cut(s) 937
SaqAI TTAA 1 cut(s) 299
SatI GCNGC 4 cut(s) 5, 319, 468, 732
Sau3AI GATC 4 cut(s) 229, 439, 472, 704
Sau96I GGNCC 1 cut(s) 544
SchI GAGTC 1 cut(s) 676
ScrFI CCNGG 3 cut(s) 59, 201, 927
SduI GDGCHC 2 cut(s) 57, 932
SfaNI GCATC 4 cut(s) 234, 370, 454, 859
SinI GGWCC 1 cut(s) 544
Sse9I AATT 5 cut(s) 501, 771, 782, 1016, 1133
SsiI CCGC 2 cut(s) 40, 960
SspI AATATT 1 cut(s) 655
SspMI CTAG 2 cut(s) 66, 261
StyD4I CCNGG 3 cut(s) 57, 199, 925
StyI CCWWGG 2 cut(s) 708, 764
TaaI ACNGT 2 cut(s) 257, 548
TaiI ACGT 4 cut(s) 144, 155, 329, 1052
TasI AATT 5 cut(s) 501, 771, 782, 1016, 1133
TfiI GAWTC 6 cut(s) 43, 97, 106, 875, 1011, 1078
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
TscAI CASTG 1 cut(s) 339
TseI GCWGC 4 cut(s) 4, 318, 467, 731
TspDTI ATGAA 6 cut(s) 150, 449, 542, 600, 867, 962
TspGWI ACGGA 3 cut(s) 137, 467, 863
TspRI CASTG 1 cut(s) 339
VpaK11BI GGWCC 1 cut(s) 544
XapI RAATTY 1 cut(s) 782
XspI CTAG 2 cut(s) 66, 261
Zsp2I ATGCAT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.