Rh5BG215100

Ethylene-responsive transcription factor-like protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
24844971 .. 24845324
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG215100.1

Sequence Viewer

Length: 354 bp
ATGAAATGGCAGGCAGCAATTAAGGTTGACAAGAAACAAATCCACTTGGGCACTGTTGGTTCACAAGAAGAGGTTGCTCATTTGTACGATAGGGCTGCTTTCATGTGTGGGAGGGAGCCAAATTTTGTGCTTCCTGAAGAAGAGAAGCAGGAACTGATGAAGTTCAAGTGGGATGAATTCTTGGCGGTGACTCGTCACTCCATTAACAACAAAAAGCTCAAGAAGTGGCAGTGGTCTGCCTCAGAAAAGAGGTCTGTGACACTTCCATTACAAGATGGTGACTGGGATGACAAAGAAGAAGTAAATGGTCTGTCAACTTCGGAAGATGGGGAGGAAGACACACGACTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

117

Amino Acids

13.62

Weight (kDa)

5.25

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 185
AcsI RAATTY 2 cut(s) 121, 176
AcuI CTGAAG 1 cut(s) 156
AfaI GTAC 1 cut(s) 86
AgsI TTSAA 1 cut(s) 166
AluBI AGCT 1 cut(s) 217
AluI AGCT 1 cut(s) 217
AlwNI CAGNNNCTG 1 cut(s) 154
ApeKI GCWGC 2 cut(s) 14, 95
ApoI RAATTY 2 cut(s) 121, 176
AsuHPI GGTGA 2 cut(s) 199, 290
BaeGI GKGCMC 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 342
BbvI GCAGC 2 cut(s) 26, 82
BccI CCATC 2 cut(s) 269, 320
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BisI GCNGC 2 cut(s) 15, 96
BlsI GCNGC 2 cut(s) 16, 97
BmiI GGNNCC 1 cut(s) 117
BmrI ACTGGG 1 cut(s) 292
BmuI ACTGGG 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 342
BpuEI CTTGAG 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 287
BseGI GGATG 2 cut(s) 178, 292
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 287
BseSI GKGCMC 1 cut(s) 53
BseXI GCAGC 2 cut(s) 26, 82
Bsp1286I GDGCHC 1 cut(s) 53
BspACI CCGC 1 cut(s) 185
BspCNI CTCAG 1 cut(s) 254
BspLI GGNNCC 1 cut(s) 117
BsrI ACTGG 1 cut(s) 287
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 2 cut(s) 63, 135
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 1 cut(s) 241
BstF5I GGATG 2 cut(s) 178, 292
BstSLI GKGCMC 1 cut(s) 53
BstV1I GCAGC 2 cut(s) 26, 82
BstV2I GAAGAC 1 cut(s) 342
BtsCI GGATG 2 cut(s) 178, 292
BtsI GCAGTG 1 cut(s) 236
BtsIMutI CAGTG 2 cut(s) 51, 236
Cac8I GCNNGC 1 cut(s) 12
CaiI CAGNNNCTG 1 cut(s) 154
Csp6I GTAC 1 cut(s) 85
CviAII CATG 1 cut(s) 103
CviJI RGCY 3 cut(s) 95, 118, 217
CviKI_1 RGCY 3 cut(s) 95, 118, 217
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 1 cut(s) 241
Eam1104I CTCTTC 2 cut(s) 63, 135
EarI CTCTTC 2 cut(s) 63, 135
Eco57I CTGAAG 1 cut(s) 156
EcoRI GAATTC 1 cut(s) 176
FaeI CATG 1 cut(s) 106
FaiI YATR 1 cut(s) 104
FatI CATG 1 cut(s) 102
Fnu4HI GCNGC 2 cut(s) 15, 96
FokI GGATG 2 cut(s) 185, 299
Fsp4HI GCNGC 2 cut(s) 15, 96
GluI GCNGC 2 cut(s) 15, 96
Hin1II CATG 1 cut(s) 106
HincII GTYRAC 2 cut(s) 28, 315
HindII GTYRAC 2 cut(s) 28, 315
HinfI GANTC 2 cut(s) 190, 345
HphI GGTGA 2 cut(s) 199, 290
Hpy166II GTNNAC 3 cut(s) 28, 62, 315
Hpy188I TCNGA 2 cut(s) 244, 322
Hpy188III TCNNGA 3 cut(s) 134, 220, 351
Hpy8I GTNNAC 3 cut(s) 28, 62, 315
HpyCH4III ACNGT 1 cut(s) 55
HpyF3I CTNAG 1 cut(s) 241
Hsp92II CATG 1 cut(s) 106
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 3 cut(s) 134, 147, 268
Lsp1109I GCAGC 2 cut(s) 26, 82
MaeIII GTNAC 4 cut(s) 187, 194, 256, 278
MboII GAAGA 6 cut(s) 80, 149, 152, 308, 335, 347
MhlI GDGCHC 1 cut(s) 53
MluCI AATT 3 cut(s) 18, 121, 176
MlyI GAGTC 2 cut(s) 184, 339
MnlI CCTC 5 cut(s) 64, 105, 243, 250, 325
MseI TTAA 2 cut(s) 21, 204
NlaIII CATG 1 cut(s) 106
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 4 cut(s) 187, 194, 256, 278
PkrI GCNGC 2 cut(s) 16, 97
PleI GAGTC 2 cut(s) 184, 339
PpsI GAGTC 2 cut(s) 184, 339
PspN4I GGNNCC 1 cut(s) 117
PstNI CAGNNNCTG 1 cut(s) 154
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SaqAI TTAA 2 cut(s) 21, 204
SatI GCNGC 2 cut(s) 15, 96
SchI GAGTC 2 cut(s) 184, 339
SduI GDGCHC 1 cut(s) 53
SetI ASST 4 cut(s) 27, 75, 219, 254
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 3 cut(s) 18, 121, 176
SsiI CCGC 1 cut(s) 185
TaaI ACNGT 1 cut(s) 55
TasI AATT 3 cut(s) 18, 121, 176
Tru1I TTAA 2 cut(s) 21, 204
Tru9I TTAA 2 cut(s) 21, 204
TscAI CASTG 2 cut(s) 58, 236
TseFI GTSAC 4 cut(s) 187, 194, 256, 278
TseI GCWGC 2 cut(s) 14, 95
Tsp45I GTSAC 4 cut(s) 187, 194, 256, 278
TspDTI ATGAA 4 cut(s) 17, 91, 173, 189
TspRI CASTG 2 cut(s) 58, 236
XapI RAATTY 2 cut(s) 121, 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.