Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003228

Physical Location & Seq

Genomic Coordinates Forward (+)

30053091 .. 30057462

Gene Structure 4372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1171400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGTGAGCTTAAGAAGGCGCAGACTGTTGGGATTGGGACTATGCTGTGAGATACCTCCGGTTCTAGATCCACTTCCTAGGGTTGTCAACAATGGAACCACTCCTCAAAATTTCACCCGTGCGAATCCTGTCAGTGTGCATCCCATGCCTGCAAATGATGCATATCAACCAGATGGGAATACCATTGTGAAAGCAGAATTTCGGTCCTCAACTGCATCGGGTTGTAGCTTATCCAAAGAGCAGCACGATGTGGCAGGGCCACCAATCAAACGCAGAAAGCGACATCGCAGAAAGCATGCTCAGAACCAGGAACCATGTCTAATGAGAGGTGTCTATTTCAAGAATATGAAGTGGCAGGCAGCAATAAAAGTTGACAAGAAACAAATCCACTTGGGCACTGTTGGTTCACAAGAAGAGGCTGCTCATTTGTACGACAGGGCTGCTTTCATGTGTGGGAGGGAACCAAATTTCGAGCTTTCTGAGGAGGAGAAGAAAGAACTCAGGAAATTCAAGTGGGATGAATTCTTGGCTATGACTCGTCATGCAATTACCAACAAAAAGCACCGGAGAAGGTCAGGGGCAGAGTCAGAGAAGAGGTCCGAGAGTCCTCAATTGGAAGACGCAAACTGGGAGGATGAAAAAGAAGAAGTGAATGTCCTCTCAGCTTCAGAAGATGCAGAGCAAGACATGTTAGACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

234

Amino Acids

26.65

Weight (kDa)

8.77

Isoelectric Point (pI)

65.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040
fragaria_vesca	FvH4_2g18520
malus_domestica	MD05G1171400.v1.1 MD10G1039600.v1.1 MD10G1159600.v1.1
prunus_persica	Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1
pyrus_communis	pycom05g15810 pycom10g13780
rosa_chinensis	RchiOBHm_Chr3g0472871 RchiOBHm_Chr6g0284081
rosa_laevigata	RLG00000012771
rosa_multiflora	Rmu_sc0015649.1_g000011
rosa_roxburghii	Rroxscaffold_7G00184950
rosa_rugosa	Rorug04G0064700 Rorug06G0160300 Rorug06G0160400 Rorug06G0160500
rosa_samantha	Rh5BG215100 Rh5BG429800 Rh5CG453400 Rh5DG270800 Rh6AG273300 Rh6BG274000 Rh6CG275400 Rh6DG268400
rosa_wichuraiana	Rw6G023520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	62
AcsI	RAATTY	5 cut(s)	109, 197, 466, 506, 521
AcuI	CTGAAG	1 cut(s)	651
AdeI	CACNNNGTG	1 cut(s)	250
AfaI	GTAC	1 cut(s)	431
AflII	CTTAAG	1 cut(s)	10
AflIII	ACRYGT	1 cut(s)	687
AgsI	TTSAA	2 cut(s)	340, 511
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	4 cut(s)	9, 228, 475, 665
AluI	AGCT	4 cut(s)	9, 228, 475, 665
AlwI	GGATC	1 cut(s)	62
AoxI	GGCC	1 cut(s)	257
ApeKI	GCWGC	4 cut(s)	241, 359, 419, 440
ApoI	RAATTY	5 cut(s)	109, 197, 466, 506, 521
AspA2I	CCTAGG	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	3 cut(s)	204, 257, 597
AsuHPI	GGTGA	2 cut(s)	16, 106
AvaII	GGWCC	2 cut(s)	204, 597
AvrII	CCTAGG	1 cut(s)	77
BaeGI	GKGCMC	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	624
BbvI	GCAGC	4 cut(s)	253, 371, 406, 427
BccI	CCATC	1 cut(s)	167
BcgI	CGANNNNNNTGC	2 cut(s)	422, 456
BciT130I	CCWGG	1 cut(s)	308
BfaI	CTAG	2 cut(s)	65, 78
BfrI	CTTAAG	1 cut(s)	10
BisI	GCNGC	4 cut(s)	242, 360, 420, 441
BlnI	CCTAGG	1 cut(s)	77
BlsI	GCNGC	4 cut(s)	243, 361, 421, 442
Bme1390I	CCNGG	1 cut(s)	308
Bme18I	GGWCC	2 cut(s)	204, 597
BmgT120I	GGNCC	3 cut(s)	204, 257, 597
BmiI	GGNNCC	3 cut(s)	97, 312, 462
BmrFI	CCNGG	1 cut(s)	308
BmrI	ACTGGG	1 cut(s)	637
BmsI	GCATC	4 cut(s)	148, 148, 224, 664
BmuI	ACTGGG	1 cut(s)	637
BpiI	GAAGAC	1 cut(s)	624
BsaBI	GATNNNNATC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	77
BsaWI	WCCGGW	2 cut(s)	58, 564
Bse1I	ACTGG	1 cut(s)	632
Bse8I	GATNNNNATC	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	1 cut(s)	77
BseGI	GGATG	3 cut(s)	139, 523, 640
BseJI	GATNNNNATC	1 cut(s)	162
BseMII	CTCAG	4 cut(s)	314, 471, 514, 675
BseNI	ACTGG	1 cut(s)	632
BseRI	GAGGAG	3 cut(s)	93, 497, 500
BseSI	GKGCMC	1 cut(s)	398
BseXI	GCAGC	4 cut(s)	253, 371, 406, 427
BshFI	GGCC	1 cut(s)	259
BsiSI	CCGG	2 cut(s)	59, 565
BslFI	GGGAC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	51
BsnI	GGCC	1 cut(s)	259
Bsp1286I	GDGCHC	1 cut(s)	398
Bsp143I	GATC	1 cut(s)	67
BspANI	GGCC	1 cut(s)	259
BspCNI	CTCAG	4 cut(s)	313, 472, 513, 674
BspLI	GGNNCC	3 cut(s)	97, 312, 462
BspPI	GGATC	1 cut(s)	62
BspTI	CTTAAG	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	632
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	1 cut(s)	67
BssT1I	CCWWGG	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	27, 400
Bst6I	CTCTTC	2 cut(s)	408, 587
BstAFI	CTTAAG	1 cut(s)	10
BstAPI	GCANNNNNTGC	2 cut(s)	145, 158
BstC8I	GCNNGC	3 cut(s)	150, 297, 357
BstDEI	CTNAG	4 cut(s)	300, 480, 500, 661
BstF5I	GGATG	3 cut(s)	139, 523, 640
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	1 cut(s)	70
BstMBI	GATC	1 cut(s)	67
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 158
BstNI	CCWGG	1 cut(s)	308
BstNSI	RCATGY	2 cut(s)	299, 691
BstSCI	CCNGG	1 cut(s)	306
BstSLI	GKGCMC	1 cut(s)	398
BstV1I	GCAGC	4 cut(s)	253, 371, 406, 427
BstV2I	GAAGAC	1 cut(s)	624
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	259
BtgZI	GCGATG	1 cut(s)	269
BtsCI	GGATG	3 cut(s)	139, 523, 640
BtsIMutI	CAGTG	2 cut(s)	139, 396
Cac8I	GCNNGC	3 cut(s)	150, 297, 357
CfoI	GCGC	1 cut(s)	21
Cfr13I	GGNCC	3 cut(s)	204, 257, 597
CseI	GACGC	1 cut(s)	629
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	6 cut(s)	145, 296, 315, 448, 542, 688
CviJI	RGCY	8 cut(s)	9, 228, 259, 419, 440, 475, 530, 665
CviKI_1	RGCY	8 cut(s)	9, 228, 259, 419, 440, 475, 530, 665
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	4 cut(s)	300, 480, 500, 661
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
DraIII	CACNNNGTG	1 cut(s)	250
Eam1104I	CTCTTC	2 cut(s)	408, 587
EarI	CTCTTC	2 cut(s)	408, 587
Eco130I	CCWWGG	1 cut(s)	77
Eco47I	GGWCC	2 cut(s)	204, 597
Eco57I	CTGAAG	1 cut(s)	651
EcoRI	GAATTC	1 cut(s)	521
EcoRII	CCWGG	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	77
EcoT22I	ATGCAT	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	6 cut(s)	148, 299, 318, 451, 545, 691
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	6 cut(s)	144, 295, 314, 447, 541, 687
Fnu4HI	GCNGC	4 cut(s)	242, 360, 420, 441
FokI	GGATG	3 cut(s)	126, 530, 647
Fsp4HI	GCNGC	4 cut(s)	242, 360, 420, 441
FspBI	CTAG	2 cut(s)	65, 78
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	4 cut(s)	242, 360, 420, 441
HaeIII	GGCC	1 cut(s)	259
HapII	CCGG	2 cut(s)	59, 565
HgaI	GACGC	1 cut(s)	629
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	6 cut(s)	148, 299, 318, 451, 545, 691
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HincII	GTYRAC	2 cut(s)	88, 373
HindII	GTYRAC	2 cut(s)	88, 373
HinfI	GANTC	5 cut(s)	124, 535, 584, 604, 695
HpaII	CCGG	2 cut(s)	59, 565
HphI	GGTGA	2 cut(s)	16, 106
Hpy166II	GTNNAC	3 cut(s)	88, 373, 407
Hpy188I	TCNGA	5 cut(s)	303, 481, 589, 601, 670
Hpy188III	TCNNGA	4 cut(s)	65, 340, 502, 699
Hpy8I	GTNNAC	3 cut(s)	88, 373, 407
HpyAV	CCTTC	2 cut(s)	9, 564
HpyCH4III	ACNGT	2 cut(s)	27, 400
HpyCH4V	TGCA	6 cut(s)	139, 152, 161, 215, 545, 677
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 158
HpyF3I	CTNAG	4 cut(s)	300, 480, 500, 661
Hsp92II	CATG	6 cut(s)	148, 299, 318, 451, 545, 691
HspAI	GCGC	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	67
Lsp1109I	GCAGC	4 cut(s)	253, 371, 406, 427
LweI	GCATC	4 cut(s)	148, 148, 224, 664
MaeI	CTAG	2 cut(s)	65, 78
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MboII	GAAGA	6 cut(s)	425, 502, 604, 629, 656, 683
MfeI	CAATTG	1 cut(s)	611
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	398
MluCI	AATT	7 cut(s)	109, 197, 466, 506, 521, 546, 611
MlyI	GAGTC	4 cut(s)	529, 593, 613, 689
Mph1103I	ATGCAT	1 cut(s)	163
MseI	TTAA	1 cut(s)	11
MspCI	CTTAAG	1 cut(s)	10
MspI	CCGG	2 cut(s)	59, 565
MspR9I	CCNGG	1 cut(s)	308
MunI	CAATTG	1 cut(s)	611
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	2 cut(s)	145, 158
NdeII	GATC	1 cut(s)	67
NlaIII	CATG	6 cut(s)	148, 299, 318, 451, 545, 691
NlaIV	GGNNCC	3 cut(s)	97, 312, 462
NsiI	ATGCAT	1 cut(s)	163
NspI	RCATGY	2 cut(s)	299, 691
PaeI	GCATGC	1 cut(s)	299
PciI	ACATGT	1 cut(s)	687
PcsI	WCGNNNNNNNCGW	1 cut(s)	277
PfeI	GAWTC	1 cut(s)	124
PkrI	GCNGC	4 cut(s)	243, 361, 421, 442
PleI	GAGTC	4 cut(s)	529, 592, 612, 689
PpsI	GAGTC	4 cut(s)	529, 592, 612, 689
PscI	ACATGT	1 cut(s)	687
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	3 cut(s)	97, 312, 462
PspPI	GGNCC	3 cut(s)	204, 257, 597
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	4 cut(s)	242, 360, 420, 441
Sau3AI	GATC	1 cut(s)	67
Sau96I	GGNCC	3 cut(s)	204, 257, 597
SchI	GAGTC	4 cut(s)	529, 593, 613, 689
ScrFI	CCNGG	1 cut(s)	308
SduI	GDGCHC	1 cut(s)	398
SetI	ASST	8 cut(s)	11, 58, 230, 331, 477, 575, 599, 667
SfaNI	GCATC	4 cut(s)	148, 148, 224, 664
SinI	GGWCC	2 cut(s)	204, 597
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
SphI	GCATGC	1 cut(s)	299
Sse9I	AATT	7 cut(s)	109, 197, 466, 506, 521, 546, 611
SspMI	CTAG	2 cut(s)	65, 78
StyD4I	CCNGG	1 cut(s)	306
StyI	CCWWGG	1 cut(s)	77
TaaI	ACNGT	2 cut(s)	27, 400
TaqI	TCGA	1 cut(s)	471
TaqII	GACCGA	1 cut(s)	192
TasI	AATT	7 cut(s)	109, 197, 466, 506, 521, 546, 611
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	2 cut(s)	139, 403
TseI	GCWGC	4 cut(s)	241, 359, 419, 440
TspDTI	ATGAA	4 cut(s)	362, 436, 534, 651
TspRI	CASTG	2 cut(s)	139, 403
Vha464I	CTTAAG	1 cut(s)	10
VpaK11BI	GGWCC	2 cut(s)	204, 597
XapI	RAATTY	5 cut(s)	109, 197, 466, 506, 521
XbaI	TCTAGA	1 cut(s)	64
XceI	RCATGY	2 cut(s)	299, 691
XmaJI	CCTAGG	1 cut(s)	77
XspI	CTAG	2 cut(s)	65, 78
Zsp2I	ATGCAT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.