Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003228

Physical Location & Seq

Genomic Coordinates Forward (+)

49480809 .. 49484303

Gene Structure 3495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG274000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGGTGGTCCATTGTTGACTTGTCTACTCGGTTTGTGGTCATGGGCATTTTGCGTTGACGAGCTTCAAGGACTGGAATTGCTTTTCTTCCTTCTTTGGCTTTGTGGTTTAAGTGTTAAGCTGCAACCATCAACAATGGTGAGCTTAAGAAGGCGCAGGCTCTTGGGACTATGCTCTGGGATAAGTTCTTTTCTAACTCCACTTCCTATGTTTTGTGACAACGCAAAACCTGATAGCGTGCATCCCAGGCCTTCAAAAGATAGAAATCTGCTAGATGGGAGTAATGGTGGAAAAATAGAACCTCTATCATCAACAACATATGGTTCTAGCTTGGCGAAAGAGCAACCTCAAAAATATGTTCCAGGGCCACCAATTAAACGCAGAAAGCGACATCGCAGGAAGCATATTCATAACCAAGAACCATGTCTAATGAGAGGTGTCTATTTCAAAAATATGAAATGGCAGGCAGCAATTAAGGTTGACAAGAAACAAATCCACTTGGGCACTGTTGGTTCACAAGAAGAGGCTGCTCATTTGTACGATAGGGCTGCTTTCATGTGTGGGAGAGAGCCAAATTTTGAGCTTCCTGAAGAGGAGAAGCAGGAACTGATGAAGTTCAAGTGGGATGAATTCTTGGCGGTGACTCGTCACTCCATTAACAACAAAAAGCTCAAGAAGTGGCAGTGGTCTGGATCAGAAAAGAGGTCTGAGACACCTCCATTACAAGATGGTGACTGGGATGACAAGCAAGAAGTAAATGGTCTGTCAACTTCGGAAGATGGGGAGGACGACACACGACTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

268

Amino Acids

30.64

Weight (kDa)

8.89

Isoelectric Point (pI)

58.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040
fragaria_vesca	FvH4_2g18520
malus_domestica	MD05G1171400.v1.1 MD10G1039600.v1.1 MD10G1159600.v1.1
prunus_persica	Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1
pyrus_communis	pycom05g15810 pycom10g13780
rosa_chinensis	RchiOBHm_Chr3g0472871 RchiOBHm_Chr6g0284081
rosa_laevigata	RLG00000012771
rosa_multiflora	Rmu_sc0015649.1_g000011
rosa_roxburghii	Rroxscaffold_7G00184950
rosa_rugosa	Rorug04G0064700 Rorug06G0160300 Rorug06G0160400 Rorug06G0160500
rosa_samantha	Rh5BG215100 Rh5BG429800 Rh5CG453400 Rh5DG270800 Rh6AG273300 Rh6BG274000 Rh6CG275400 Rh6DG268400
rosa_wichuraiana	Rw6G023520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	25
AciI	CCGC	1 cut(s)	638
AclWI	GGATC	1 cut(s)	700
AcsI	RAATTY	2 cut(s)	574, 629
AcuI	CTGAAG	1 cut(s)	609
AfaI	GTAC	1 cut(s)	539
AflII	CTTAAG	1 cut(s)	145
AgsI	TTSAA	4 cut(s)	68, 255, 448, 619
AjnI	CCWGG	2 cut(s)	245, 361
AluBI	AGCT	6 cut(s)	64, 121, 144, 330, 583, 670
AluI	AGCT	6 cut(s)	64, 121, 144, 330, 583, 670
Alw26I	GTCTC	1 cut(s)	704
AlwI	GGATC	1 cut(s)	700
AlwNI	CAGNNNCTG	1 cut(s)	607
AoxI	GGCC	2 cut(s)	248, 365
ApeKI	GCWGC	4 cut(s)	121, 467, 527, 548
ApoI	RAATTY	2 cut(s)	574, 629
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	2 cut(s)	8, 365
AsuHPI	GGTGA	3 cut(s)	151, 652, 743
AvaII	GGWCC	1 cut(s)	8
BaeGI	GKGCMC	1 cut(s)	506
BbvI	GCAGC	4 cut(s)	108, 479, 514, 535
BccI	CCATC	4 cut(s)	136, 269, 722, 773
BcgI	CGANNNNNNTGC	2 cut(s)	530, 564
BciT130I	CCWGG	2 cut(s)	247, 363
BcoDI	GTCTC	1 cut(s)	704
BfaI	CTAG	2 cut(s)	272, 327
BfrI	CTTAAG	1 cut(s)	145
BisI	GCNGC	4 cut(s)	122, 468, 528, 549
BlsI	GCNGC	4 cut(s)	123, 469, 529, 550
Bme1390I	CCNGG	2 cut(s)	247, 363
Bme18I	GGWCC	1 cut(s)	8
BmgT120I	GGNCC	2 cut(s)	8, 365
BmrFI	CCNGG	2 cut(s)	247, 363
BmrI	ACTGGG	1 cut(s)	745
BmsI	GCATC	1 cut(s)	250
BmuI	ACTGGG	1 cut(s)	745
BpuEI	CTTGAG	1 cut(s)	656
BsaBI	GATNNNNATC	1 cut(s)	264
BsaJI	CCNNGG	2 cut(s)	245, 362
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bse1I	ACTGG	2 cut(s)	78, 740
Bse8I	GATNNNNATC	1 cut(s)	264
BseBI	CCWGG	2 cut(s)	247, 363
BseDI	CCNNGG	2 cut(s)	245, 362
BseGI	GGATG	3 cut(s)	241, 631, 745
BseJI	GATNNNNATC	1 cut(s)	264
BseMII	CTCAG	1 cut(s)	699
BseNI	ACTGG	2 cut(s)	78, 740
BseRI	GAGGAG	1 cut(s)	608
BseSI	GKGCMC	1 cut(s)	506
BseXI	GCAGC	4 cut(s)	108, 479, 514, 535
BshFI	GGCC	2 cut(s)	250, 367
BslFI	GGGAC	1 cut(s)	180
BsmAI	GTCTC	1 cut(s)	704
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	2 cut(s)	250, 367
Bsp1286I	GDGCHC	1 cut(s)	506
Bsp143I	GATC	1 cut(s)	692
BspACI	CCGC	1 cut(s)	638
BspANI	GGCC	2 cut(s)	250, 367
BspCNI	CTCAG	1 cut(s)	700
BspPI	GGATC	1 cut(s)	700
BspTI	CTTAAG	1 cut(s)	145
BsrI	ACTGG	2 cut(s)	78, 740
BssECI	CCNNGG	2 cut(s)	245, 362
BssMI	GATC	1 cut(s)	692
Bst2UI	CCWGG	2 cut(s)	247, 363
Bst4CI	ACNGT	1 cut(s)	508
Bst6I	CTCTTC	2 cut(s)	516, 585
BstAFI	CTTAAG	1 cut(s)	145
BstC8I	GCNNGC	3 cut(s)	158, 239, 465
BstDEI	CTNAG	1 cut(s)	708
BstF5I	GGATG	3 cut(s)	241, 631, 745
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	1 cut(s)	695
BstMAI	GTCTC	1 cut(s)	704
BstMBI	GATC	1 cut(s)	692
BstMWI	GCNNNNNNNGC	1 cut(s)	247
BstNI	CCWGG	2 cut(s)	247, 363
BstSCI	CCNGG	2 cut(s)	245, 361
BstSLI	GKGCMC	1 cut(s)	506
BstV1I	GCAGC	4 cut(s)	108, 479, 514, 535
BsuRI	GGCC	2 cut(s)	250, 367
BtgZI	GCGATG	1 cut(s)	377
BtsCI	GGATG	3 cut(s)	241, 631, 745
BtsI	GCAGTG	1 cut(s)	689
BtsIMutI	CAGTG	2 cut(s)	504, 689
Cac8I	GCNNGC	3 cut(s)	158, 239, 465
CaiI	CAGNNNCTG	1 cut(s)	607
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	2 cut(s)	8, 365
Csp6I	GTAC	1 cut(s)	538
CviAII	CATG	3 cut(s)	42, 423, 556
CviQI	GTAC	1 cut(s)	538
DdeI	CTNAG	1 cut(s)	708
DpnI	GATC	1 cut(s)	694
DpnII	GATC	1 cut(s)	692
Eam1104I	CTCTTC	2 cut(s)	516, 585
EarI	CTCTTC	2 cut(s)	516, 585
Eco147I	AGGCCT	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	609
EcoRI	GAATTC	1 cut(s)	629
EcoRII	CCWGG	2 cut(s)	245, 361
FaeI	CATG	3 cut(s)	45, 426, 559
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	3 cut(s)	41, 422, 555
FauNDI	CATATG	1 cut(s)	319
FblI	GTMKAC	1 cut(s)	25
Fnu4HI	GCNGC	4 cut(s)	122, 468, 528, 549
FokI	GGATG	3 cut(s)	228, 638, 752
Fsp4HI	GCNGC	4 cut(s)	122, 468, 528, 549
FspBI	CTAG	2 cut(s)	272, 327
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	4 cut(s)	122, 468, 528, 549
HaeIII	GGCC	2 cut(s)	250, 367
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	3 cut(s)	45, 426, 559
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HincII	GTYRAC	4 cut(s)	18, 58, 481, 768
HindII	GTYRAC	4 cut(s)	18, 58, 481, 768
HinfI	GANTC	2 cut(s)	643, 798
HphI	GGTGA	3 cut(s)	151, 652, 743
Hpy166II	GTNNAC	6 cut(s)	18, 26, 58, 481, 515, 768
Hpy188I	TCNGA	3 cut(s)	697, 709, 775
Hpy188III	TCNNGA	4 cut(s)	587, 673, 690, 804
Hpy8I	GTNNAC	6 cut(s)	18, 26, 58, 481, 515, 768
HpyAV	CCTTC	3 cut(s)	101, 144, 261
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4V	TGCA	2 cut(s)	124, 241
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
HpyF3I	CTNAG	1 cut(s)	708
Hsp92II	CATG	3 cut(s)	45, 426, 559
HspAI	GCGC	1 cut(s)	154
Kzo9I	GATC	1 cut(s)	692
Lsp1109I	GCAGC	4 cut(s)	108, 479, 514, 535
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	2 cut(s)	272, 327
MaeIII	GTNAC	4 cut(s)	215, 640, 647, 731
MalI	GATC	1 cut(s)	694
MboI	GATC	1 cut(s)	692
MboII	GAAGA	4 cut(s)	79, 533, 602, 788
MhlI	GDGCHC	1 cut(s)	506
MluCI	AATT	5 cut(s)	77, 372, 471, 574, 629
MlyI	GAGTC	2 cut(s)	637, 792
MnlI	CCTC	8 cut(s)	312, 357, 428, 517, 586, 696, 726, 778
MseI	TTAA	6 cut(s)	110, 117, 146, 375, 474, 657
MspCI	CTTAAG	1 cut(s)	145
MspR9I	CCNGG	2 cut(s)	247, 363
MvaI	CCWGG	2 cut(s)	247, 363
MwoI	GCNNNNNNNGC	1 cut(s)	247
NdeI	CATATG	1 cut(s)	319
NdeII	GATC	1 cut(s)	692
NlaIII	CATG	3 cut(s)	45, 426, 559
NmuCI	GTSAC	4 cut(s)	215, 640, 647, 731
PceI	AGGCCT	1 cut(s)	250
PcsI	WCGNNNNNNNCGW	1 cut(s)	385
PkrI	GCNGC	4 cut(s)	123, 469, 529, 550
PleI	GAGTC	2 cut(s)	637, 792
PpsI	GAGTC	2 cut(s)	637, 792
Psp6I	CCWGG	2 cut(s)	245, 361
PspGI	CCWGG	2 cut(s)	245, 361
PspPI	GGNCC	2 cut(s)	8, 365
PstNI	CAGNNNCTG	1 cut(s)	607
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
SaqAI	TTAA	6 cut(s)	110, 117, 146, 375, 474, 657
SatI	GCNGC	4 cut(s)	122, 468, 528, 549
Sau3AI	GATC	1 cut(s)	692
Sau96I	GGNCC	2 cut(s)	8, 365
SchI	GAGTC	2 cut(s)	637, 792
ScrFI	CCNGG	2 cut(s)	247, 363
SduI	GDGCHC	1 cut(s)	506
SfaNI	GCATC	1 cut(s)	250
SinI	GGWCC	1 cut(s)	8
SmlI	CTYRAG	2 cut(s)	145, 671
SmoI	CTYRAG	2 cut(s)	145, 671
Sse9I	AATT	5 cut(s)	77, 372, 471, 574, 629
SseBI	AGGCCT	1 cut(s)	250
SsiI	CCGC	1 cut(s)	638
SspMI	CTAG	2 cut(s)	272, 327
StuI	AGGCCT	1 cut(s)	250
StyD4I	CCNGG	2 cut(s)	245, 361
TaaI	ACNGT	1 cut(s)	508
TasI	AATT	5 cut(s)	77, 372, 471, 574, 629
Tru1I	TTAA	6 cut(s)	110, 117, 146, 375, 474, 657
Tru9I	TTAA	6 cut(s)	110, 117, 146, 375, 474, 657
TscAI	CASTG	2 cut(s)	511, 689
TseFI	GTSAC	4 cut(s)	215, 640, 647, 731
TseI	GCWGC	4 cut(s)	121, 467, 527, 548
Tsp45I	GTSAC	4 cut(s)	215, 640, 647, 731
TspDTI	ATGAA	5 cut(s)	398, 470, 544, 626, 642
TspRI	CASTG	2 cut(s)	511, 689
Vha464I	CTTAAG	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	8
XapI	RAATTY	2 cut(s)	574, 629
XmiI	GTMKAC	1 cut(s)	25
XspI	CTAG	2 cut(s)	272, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.