Rw6G023520

Ethylene-responsive transcription factor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0003228
Physical Location & Seq
Forward (+)
46134160 .. 46138100
3941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G023520.1

Sequence Viewer

Length: 672 bp
ATGGTGAGCTTAAGAAGGCGCAGGCTCTTGGGACTATGCTCTGGGATAAGTTCTTTGCTAACTCCACTTCCTATGTTTTGTGACAACGCAAAACCTGATAGCGTGCATCCCAGGCCTTCAAAAGATAGAAATCTGCTAGATGGGAGTAATGGTGGAAAAATAGAACCTCTATCGTCAACAGCATATGGTTCTAGCTTGGCGAAAGAGCAACCTCAAAAATATGTTCCAGGGCCACCAATTAAACGCAGAAAGCGACATCGCAGGAAGCATATTCATAACCAAGAACCATGTCTAATGAGAGGTGTCTATTTCAAAAATATGAAATGGCAGGCAGCAATTAAGGTTGACAAGAAACAAATCCACTTGGGCACTGTTGGTTCACAAGAAGAGGCTGCTCATTTGTACGATAGGGCTGCTTTCATGTGTGGGAGGGAGCCAAATTTTGAGCTTCCTGAAGAGGAGAAGCAGGAGCTGATGAAGTTCAAGTGGGATGAATTCTTGGCGGTGACTCGTCACTCCATTAACAACAAAAAGCTGAAGAAGTGGCAGTGGTCTGGCTCAGAAAAGAGGTCTCAGACACCTCCATTACAAGATGGTGACTGGGATGACAAGCAAGAAGTAAATGGTCTGTCAACTTCGGAAGATGGGGAGGAAGACACACGACTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

223

Amino Acids

25.59

Weight (kDa)

9.39

Isoelectric Point (pI)

63.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 503
AcsI RAATTY 2 cut(s) 439, 494
AcuI CTGAAG 2 cut(s) 474, 557
AfaI GTAC 1 cut(s) 404
AflII CTTAAG 1 cut(s) 10
AgsI TTSAA 3 cut(s) 120, 313, 484
AjnI CCWGG 2 cut(s) 110, 226
AluBI AGCT 5 cut(s) 9, 195, 448, 472, 535
AluI AGCT 5 cut(s) 9, 195, 448, 472, 535
Alw26I GTCTC 1 cut(s) 576
AlwNI CAGNNNCTG 1 cut(s) 472
AoxI GGCC 2 cut(s) 113, 230
ApeKI GCWGC 3 cut(s) 332, 392, 413
ApoI RAATTY 2 cut(s) 439, 494
AspLEI GCGC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 3 cut(s) 16, 517, 608
BaeGI GKGCMC 1 cut(s) 371
BbsI GAAGAC 1 cut(s) 660
BbvI GCAGC 3 cut(s) 344, 379, 400
BccI CCATC 3 cut(s) 134, 587, 638
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BciT130I CCWGG 2 cut(s) 112, 228
BcoDI GTCTC 1 cut(s) 576
BfaI CTAG 2 cut(s) 137, 192
BfrI CTTAAG 1 cut(s) 10
BisI GCNGC 3 cut(s) 333, 393, 414
BlsI GCNGC 3 cut(s) 334, 394, 415
Bme1390I CCNGG 2 cut(s) 112, 228
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 435
BmrFI CCNGG 2 cut(s) 112, 228
BmrI ACTGGG 1 cut(s) 610
BmsI GCATC 1 cut(s) 115
BmuI ACTGGG 1 cut(s) 610
BpiI GAAGAC 1 cut(s) 660
BsaBI GATNNNNATC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 576
BsaJI CCNNGG 2 cut(s) 110, 227
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bse1I ACTGG 1 cut(s) 605
Bse8I GATNNNNATC 1 cut(s) 129
BseBI CCWGG 2 cut(s) 112, 228
BseDI CCNNGG 2 cut(s) 110, 227
BseGI GGATG 3 cut(s) 106, 496, 610
BseJI GATNNNNATC 1 cut(s) 129
BseMII CTCAG 2 cut(s) 573, 587
BseNI ACTGG 1 cut(s) 605
BseRI GAGGAG 1 cut(s) 473
BseSI GKGCMC 1 cut(s) 371
BseXI GCAGC 3 cut(s) 344, 379, 400
BshFI GGCC 2 cut(s) 115, 232
BslFI GGGAC 1 cut(s) 45
BsmAI GTCTC 1 cut(s) 576
BsmFI GGGAC 1 cut(s) 45
BsnI GGCC 2 cut(s) 115, 232
Bso31I GGTCTC 1 cut(s) 576
Bsp1286I GDGCHC 1 cut(s) 371
BspACI CCGC 1 cut(s) 503
BspANI GGCC 2 cut(s) 115, 232
BspCNI CTCAG 2 cut(s) 572, 586
BspLI GGNNCC 1 cut(s) 435
BspTI CTTAAG 1 cut(s) 10
BspTNI GGTCTC 1 cut(s) 576
BsrI ACTGG 1 cut(s) 605
BssECI CCNNGG 2 cut(s) 110, 227
Bst2UI CCWGG 2 cut(s) 112, 228
Bst4CI ACNGT 1 cut(s) 373
Bst6I CTCTTC 2 cut(s) 381, 450
BstAFI CTTAAG 1 cut(s) 10
BstC8I GCNNGC 3 cut(s) 23, 104, 330
BstDEI CTNAG 2 cut(s) 559, 573
BstF5I GGATG 3 cut(s) 106, 496, 610
BstHHI GCGC 1 cut(s) 21
BstMAI GTCTC 1 cut(s) 576
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNI CCWGG 2 cut(s) 112, 228
BstSCI CCNGG 2 cut(s) 110, 226
BstSLI GKGCMC 1 cut(s) 371
BstV1I GCAGC 3 cut(s) 344, 379, 400
BstV2I GAAGAC 1 cut(s) 660
BsuRI GGCC 2 cut(s) 115, 232
BtgZI GCGATG 1 cut(s) 242
BtsCI GGATG 3 cut(s) 106, 496, 610
BtsI GCAGTG 1 cut(s) 554
BtsIMutI CAGTG 2 cut(s) 369, 554
Cac8I GCNNGC 3 cut(s) 23, 104, 330
CaiI CAGNNNCTG 1 cut(s) 472
CfoI GCGC 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 230
Csp6I GTAC 1 cut(s) 403
CviAII CATG 2 cut(s) 288, 421
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 2 cut(s) 559, 573
Eam1104I CTCTTC 2 cut(s) 381, 450
EarI CTCTTC 2 cut(s) 381, 450
Eco147I AGGCCT 1 cut(s) 115
Eco31I GGTCTC 1 cut(s) 576
Eco57I CTGAAG 2 cut(s) 474, 557
EcoRI GAATTC 1 cut(s) 494
EcoRII CCWGG 2 cut(s) 110, 226
FaeI CATG 2 cut(s) 291, 424
FaqI GGGAC 1 cut(s) 45
FatI CATG 2 cut(s) 287, 420
FauNDI CATATG 1 cut(s) 184
Fnu4HI GCNGC 3 cut(s) 333, 393, 414
FokI GGATG 3 cut(s) 93, 503, 617
Fsp4HI GCNGC 3 cut(s) 333, 393, 414
FspBI CTAG 2 cut(s) 137, 192
GlaI GCGC 1 cut(s) 20
GluI GCNGC 3 cut(s) 333, 393, 414
HaeIII GGCC 2 cut(s) 115, 232
HhaI GCGC 1 cut(s) 21
Hin1II CATG 2 cut(s) 291, 424
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HincII GTYRAC 3 cut(s) 177, 346, 633
HindII GTYRAC 3 cut(s) 177, 346, 633
HinfI GANTC 2 cut(s) 508, 663
HphI GGTGA 3 cut(s) 16, 517, 608
Hpy166II GTNNAC 4 cut(s) 177, 346, 380, 633
Hpy188I TCNGA 3 cut(s) 562, 576, 640
Hpy188III TCNNGA 2 cut(s) 452, 669
Hpy8I GTNNAC 4 cut(s) 177, 346, 380, 633
HpyAV CCTTC 2 cut(s) 9, 126
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4V TGCA 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 2 cut(s) 559, 573
Hsp92II CATG 2 cut(s) 291, 424
HspAI GCGC 1 cut(s) 19
LmnI GCTCC 2 cut(s) 433, 469
Lsp1109I GCAGC 3 cut(s) 344, 379, 400
LweI GCATC 1 cut(s) 115
MaeI CTAG 2 cut(s) 137, 192
MaeIII GTNAC 4 cut(s) 80, 505, 512, 596
MboII GAAGA 5 cut(s) 398, 467, 550, 653, 665
MhlI GDGCHC 1 cut(s) 371
MluCI AATT 4 cut(s) 237, 336, 439, 494
MlyI GAGTC 2 cut(s) 502, 657
MnlI CCTC 9 cut(s) 177, 222, 293, 382, 423, 451, 561, 591, 643
MseI TTAA 4 cut(s) 11, 240, 339, 522
MspCI CTTAAG 1 cut(s) 10
MspR9I CCNGG 2 cut(s) 112, 228
MvaI CCWGG 2 cut(s) 112, 228
MwoI GCNNNNNNNGC 1 cut(s) 112
NdeI CATATG 1 cut(s) 184
NlaIII CATG 2 cut(s) 291, 424
NlaIV GGNNCC 1 cut(s) 435
NmuCI GTSAC 4 cut(s) 80, 505, 512, 596
PceI AGGCCT 1 cut(s) 115
PcsI WCGNNNNNNNCGW 1 cut(s) 250
PkrI GCNGC 3 cut(s) 334, 394, 415
PleI GAGTC 2 cut(s) 502, 657
PpsI GAGTC 2 cut(s) 502, 657
Psp6I CCWGG 2 cut(s) 110, 226
PspGI CCWGG 2 cut(s) 110, 226
PspN4I GGNNCC 1 cut(s) 435
PspPI GGNCC 1 cut(s) 230
PstNI CAGNNNCTG 1 cut(s) 472
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SaqAI TTAA 4 cut(s) 11, 240, 339, 522
SatI GCNGC 3 cut(s) 333, 393, 414
Sau96I GGNCC 1 cut(s) 230
SchI GAGTC 2 cut(s) 502, 657
ScrFI CCNGG 2 cut(s) 112, 228
SduI GDGCHC 1 cut(s) 371
SfaNI GCATC 1 cut(s) 115
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 4 cut(s) 237, 336, 439, 494
SseBI AGGCCT 1 cut(s) 115
SsiI CCGC 1 cut(s) 503
SspMI CTAG 2 cut(s) 137, 192
StuI AGGCCT 1 cut(s) 115
StyD4I CCNGG 2 cut(s) 110, 226
TaaI ACNGT 1 cut(s) 373
TasI AATT 4 cut(s) 237, 336, 439, 494
Tru1I TTAA 4 cut(s) 11, 240, 339, 522
Tru9I TTAA 4 cut(s) 11, 240, 339, 522
TscAI CASTG 2 cut(s) 376, 554
TseFI GTSAC 4 cut(s) 80, 505, 512, 596
TseI GCWGC 3 cut(s) 332, 392, 413
Tsp45I GTSAC 4 cut(s) 80, 505, 512, 596
TspDTI ATGAA 5 cut(s) 263, 335, 409, 491, 507
TspRI CASTG 2 cut(s) 376, 554
Vha464I CTTAAG 1 cut(s) 10
XapI RAATTY 2 cut(s) 439, 494
XspI CTAG 2 cut(s) 137, 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.