RchiOBHm_Chr3g0472871

Ethylene-responsive transcription factor-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
18809258 .. 18809829
572 bp
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UTR
Exon/CDS
Intron
PRQ43856

Sequence Viewer

Length: 189 bp
ATGAACAAAGATGTTTCTACACTTGCGCTCTTTGATTTTGTAGCAGCTTTAAGTTCAACAATAGCTGCTTTCATGTGTGGGAGGGAGCCAAATTTTGAGCTTCTTGAAGAGGAGAAGCAAGAACTGATGAAGTTCAAGTGGGATGAATTCTTGGCGATGACTCATCACTCCATTAACAACAAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

62

Amino Acids

7.16

Weight (kDa)

4.92

Isoelectric Point (pI)

36.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 91, 146
AgsI TTSAA 3 cut(s) 57, 107, 136
AluBI AGCT 3 cut(s) 47, 65, 100
AluI AGCT 3 cut(s) 47, 65, 100
ApeKI GCWGC 2 cut(s) 44, 65
ApoI RAATTY 2 cut(s) 91, 146
AspLEI GCGC 1 cut(s) 28
BbvI GCAGC 2 cut(s) 52, 56
BisI GCNGC 2 cut(s) 45, 66
BlsI GCNGC 2 cut(s) 46, 67
BmiI GGNNCC 1 cut(s) 87
BseGI GGATG 1 cut(s) 148
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 2 cut(s) 52, 56
BspLI GGNNCC 1 cut(s) 87
Bst6I CTCTTC 1 cut(s) 102
BstF5I GGATG 1 cut(s) 148
BstHHI GCGC 1 cut(s) 28
BstV1I GCAGC 2 cut(s) 52, 56
BtgZI GCGATG 1 cut(s) 170
BtsCI GGATG 1 cut(s) 148
CfoI GCGC 1 cut(s) 28
CviAII CATG 1 cut(s) 73
CviJI RGCY 4 cut(s) 47, 65, 88, 100
CviKI_1 RGCY 4 cut(s) 47, 65, 88, 100
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
EcoRI GAATTC 1 cut(s) 146
FaeI CATG 1 cut(s) 76
FaiI YATR 1 cut(s) 74
FatI CATG 1 cut(s) 72
Fnu4HI GCNGC 2 cut(s) 45, 66
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 2 cut(s) 45, 66
GlaI GCGC 1 cut(s) 27
GluI GCNGC 2 cut(s) 45, 66
HhaI GCGC 1 cut(s) 28
Hin1II CATG 1 cut(s) 76
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HinfI GANTC 1 cut(s) 160
Hpy188III TCNNGA 1 cut(s) 104
Hsp92II CATG 1 cut(s) 76
HspAI GCGC 1 cut(s) 26
LmnI GCTCC 1 cut(s) 85
Lsp1109I GCAGC 2 cut(s) 52, 56
MboII GAAGA 1 cut(s) 119
MluCI AATT 2 cut(s) 91, 146
MlyI GAGTC 1 cut(s) 154
MnlI CCTC 2 cut(s) 75, 103
MseI TTAA 2 cut(s) 50, 174
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 1 cut(s) 87
PkrI GCNGC 2 cut(s) 46, 67
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 87
SaqAI TTAA 2 cut(s) 50, 174
SatI GCNGC 2 cut(s) 45, 66
SchI GAGTC 1 cut(s) 154
SetI ASST 3 cut(s) 49, 67, 102
SgeI CNNG 6 cut(s) 35, 85, 116, 131, 148, 163
Sse9I AATT 2 cut(s) 91, 146
TasI AATT 2 cut(s) 91, 146
Tru1I TTAA 2 cut(s) 50, 174
Tru9I TTAA 2 cut(s) 50, 174
TseI GCWGC 2 cut(s) 44, 65
TspDTI ATGAA 4 cut(s) 17, 61, 143, 159
XapI RAATTY 2 cut(s) 91, 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.