Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003228

Physical Location & Seq

Genomic Coordinates Forward (+)

18907926 .. 18912830

Gene Structure 4905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G198700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGTGAGCTTAAGAAGACGCAGACTCTTGGGGCTATGCTCTGGGGTAAGTCCTGTTCTAGATCCACTTCCTAGGGCTTGTGACAATGGAACTGTTCCTCAAAATTTTTCTCGGACAAATCCTGTCAGCGTGCATCCCATGCCTTCAAATGATGCAAATCAGCCAGATGGGAATGCCAGCGTGAAAGTAGAAGCTCGGTCGCCAACTGCATCTGGTTCTAGCTTATCCAAAGAGCAGCATGATCAGCAAGTTGCAGGGCCACCAATAAAACGCAGAAAGCGACATCGGAGAAAGCATTTCCAAAACCAAGAACCATGTCTAATGAGAGGTGTCTATTTCAAAAATATGAAGTGGCAAGCAGCTATAAAAGTTGACAAGAAACAAATCCACTTGGGCACTGTTGGTTCACAAGAAGAGGCTGCTCGTTTGTATGACAGGGCTGCTTTCATGTGTGGGAGGGAACCCAATTTCGAGCTTTCTGAAGAGGAGAAGCAAGAACTGAGGAAATTCAAGTGGGATGAGTTCTTGGCCATGACTCGTCATGCAATCACCAACAAAAAACACAGGAGAAGGCCCGGGGCAGAGTCACACAAGAGGTCCGAGACTCCATTGGAAAATGGGGACTGGGATGACAAAGAAGAAGTAGACAGTCTCTCGGCTTCAGAAGATATGGAGCAGGATATGTTAGGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

232

Amino Acids

26.3

Weight (kDa)

9.19

Isoelectric Point (pI)

66.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040
fragaria_vesca	FvH4_2g18520
malus_domestica	MD05G1171400.v1.1 MD10G1039600.v1.1 MD10G1159600.v1.1
prunus_persica	Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1
pyrus_communis	pycom05g15810 pycom10g13780
rosa_chinensis	RchiOBHm_Chr3g0472871 RchiOBHm_Chr6g0284081
rosa_laevigata	RLG00000012771
rosa_multiflora	Rmu_sc0015649.1_g000011
rosa_roxburghii	Rroxscaffold_7G00184950
rosa_rugosa	Rorug04G0064700 Rorug06G0160300 Rorug06G0160400 Rorug06G0160500
rosa_samantha	Rh5BG215100 Rh5BG429800 Rh5CG453400 Rh5DG270800 Rh6AG273300 Rh6BG274000 Rh6CG275400 Rh6DG268400
rosa_wichuraiana	Rw6G023520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	645
AclWI	GGATC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	528
AcsI	RAATTY	2 cut(s)	103, 506
AcuI	CTGAAG	2 cut(s)	501, 645
AflII	CTTAAG	1 cut(s)	10
AgsI	TTSAA	3 cut(s)	147, 340, 511
AluBI	AGCT	5 cut(s)	9, 194, 222, 362, 475
AluI	AGCT	5 cut(s)	9, 194, 222, 362, 475
Alw26I	GTCTC	2 cut(s)	596, 656
AlwI	GGATC	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	575
AoxI	GGCC	3 cut(s)	257, 528, 572
ApeKI	GCWGC	4 cut(s)	235, 359, 419, 440
ApoI	RAATTY	2 cut(s)	103, 506
AspA2I	CCTAGG	1 cut(s)	71
AspS9I	GGNCC	3 cut(s)	257, 573, 597
AsuC2I	CCSGG	2 cut(s)	576, 577
AsuHPI	GGTGA	2 cut(s)	16, 541
AvaI	CYCGRG	1 cut(s)	575
AvaII	GGWCC	1 cut(s)	597
AvrII	CCTAGG	1 cut(s)	71
BaeGI	GKGCMC	1 cut(s)	398
BalI	TGGCCA	1 cut(s)	530
BbsI	GAAGAC	1 cut(s)	22
BbvI	GCAGC	4 cut(s)	247, 371, 406, 427
BccI	CCATC	1 cut(s)	161
BclI	TGATCA	1 cut(s)	241
BcnI	CCSGG	2 cut(s)	576, 577
BcoDI	GTCTC	2 cut(s)	596, 656
BfaI	CTAG	3 cut(s)	59, 72, 219
BfrI	CTTAAG	1 cut(s)	10
BisI	GCNGC	4 cut(s)	236, 360, 420, 441
BlnI	CCTAGG	1 cut(s)	71
BlsI	GCNGC	4 cut(s)	237, 361, 421, 442
Bme1390I	CCNGG	2 cut(s)	576, 577
Bme18I	GGWCC	1 cut(s)	597
BmeT110I	CYCGRG	1 cut(s)	575
BmgT120I	GGNCC	3 cut(s)	257, 573, 597
BmiI	GGNNCC	1 cut(s)	462
BmrFI	CCNGG	2 cut(s)	576, 577
BmrI	ACTGGG	1 cut(s)	634
BmsI	GCATC	3 cut(s)	142, 142, 218
BmuI	ACTGGG	1 cut(s)	634
BpiI	GAAGAC	1 cut(s)	22
BpuMI	CCSGG	2 cut(s)	576, 577
BsaBI	GATNNNNATC	1 cut(s)	156
BsaJI	CCNNGG	3 cut(s)	71, 575, 576
Bse1I	ACTGG	1 cut(s)	629
Bse8I	GATNNNNATC	1 cut(s)	156
BseDI	CCNNGG	3 cut(s)	71, 575, 576
BseGI	GGATG	3 cut(s)	133, 523, 634
BseJI	GATNNNNATC	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	491
BseNI	ACTGG	1 cut(s)	629
BseRI	GAGGAG	1 cut(s)	500
BseSI	GKGCMC	1 cut(s)	398
BseXI	GCAGC	4 cut(s)	247, 371, 406, 427
Bsh1285I	CGRYCG	1 cut(s)	200
BshFI	GGCC	3 cut(s)	259, 530, 574
BsiEI	CGRYCG	1 cut(s)	200
BsiHKCI	CYCGRG	1 cut(s)	575
BsiSI	CCGG	1 cut(s)	576
BslFI	GGGAC	1 cut(s)	635
BsmAI	GTCTC	2 cut(s)	596, 656
BsmFI	GGGAC	1 cut(s)	635
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	3 cut(s)	259, 530, 574
BsoBI	CYCGRG	1 cut(s)	575
Bsp1286I	GDGCHC	1 cut(s)	398
Bsp143I	GATC	2 cut(s)	61, 241
BspANI	GGCC	3 cut(s)	259, 530, 574
BspCNI	CTCAG	1 cut(s)	492
BspLI	GGNNCC	1 cut(s)	462
BspPI	GGATC	1 cut(s)	56
BspTI	CTTAAG	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	629
BssECI	CCNNGG	3 cut(s)	71, 575, 576
BssMI	GATC	2 cut(s)	61, 241
BssT1I	CCWWGG	1 cut(s)	71
Bst4CI	ACNGT	3 cut(s)	94, 400, 650
Bst6I	CTCTTC	2 cut(s)	408, 477
BstAFI	CTTAAG	1 cut(s)	10
BstAPI	GCANNNNNTGC	1 cut(s)	139
BstC8I	GCNNGC	3 cut(s)	131, 178, 357
BstDEI	CTNAG	1 cut(s)	500
BstF5I	GGATG	3 cut(s)	133, 523, 634
BstKTI	GATC	2 cut(s)	64, 244
BstMAI	GTCTC	2 cut(s)	596, 656
BstMBI	GATC	2 cut(s)	61, 241
BstMCI	CGRYCG	1 cut(s)	200
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 244
BstSCI	CCNGG	2 cut(s)	574, 575
BstSLI	GKGCMC	1 cut(s)	398
BstV1I	GCAGC	4 cut(s)	247, 371, 406, 427
BstV2I	GAAGAC	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BsuRI	GGCC	3 cut(s)	259, 530, 574
BtsCI	GGATG	3 cut(s)	133, 523, 634
BtsIMutI	CAGTG	1 cut(s)	396
Cac8I	GCNNGC	3 cut(s)	131, 178, 357
Cfr13I	GGNCC	3 cut(s)	257, 573, 597
Cfr9I	CCCGGG	1 cut(s)	575
CseI	GACGC	1 cut(s)	27
CviAII	CATG	6 cut(s)	139, 239, 315, 448, 532, 542
DdeI	CTNAG	1 cut(s)	500
DpnI	GATC	2 cut(s)	63, 243
DpnII	GATC	2 cut(s)	61, 241
EaeI	YGGCCR	1 cut(s)	528
Eam1104I	CTCTTC	2 cut(s)	408, 477
EarI	CTCTTC	2 cut(s)	408, 477
Eco130I	CCWWGG	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	597
Eco57I	CTGAAG	2 cut(s)	501, 645
Eco88I	CYCGRG	1 cut(s)	575
EcoT14I	CCWWGG	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	6 cut(s)	142, 242, 318, 451, 535, 545
FaqI	GGGAC	1 cut(s)	635
FatI	CATG	6 cut(s)	138, 238, 314, 447, 531, 541
FbaI	TGATCA	1 cut(s)	241
FblI	GTMKAC	1 cut(s)	645
Fnu4HI	GCNGC	4 cut(s)	236, 360, 420, 441
FokI	GGATG	3 cut(s)	120, 530, 641
Fsp4HI	GCNGC	4 cut(s)	236, 360, 420, 441
FspBI	CTAG	3 cut(s)	59, 72, 219
GluI	GCNGC	4 cut(s)	236, 360, 420, 441
HaeIII	GGCC	3 cut(s)	259, 530, 574
HapII	CCGG	1 cut(s)	576
HgaI	GACGC	1 cut(s)	27
Hin1II	CATG	6 cut(s)	142, 242, 318, 451, 535, 545
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	4 cut(s)	24, 535, 584, 604
HpaII	CCGG	1 cut(s)	576
HphI	GGTGA	2 cut(s)	16, 541
Hpy166II	GTNNAC	3 cut(s)	373, 407, 646
Hpy188I	TCNGA	5 cut(s)	114, 288, 481, 601, 664
Hpy188III	TCNNGA	2 cut(s)	59, 693
Hpy8I	GTNNAC	3 cut(s)	373, 407, 646
HpyAV	CCTTC	2 cut(s)	153, 564
HpyCH4III	ACNGT	3 cut(s)	94, 400, 650
HpyCH4V	TGCA	5 cut(s)	133, 155, 209, 254, 545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 244
HpyF3I	CTNAG	1 cut(s)	500
Hsp92II	CATG	6 cut(s)	142, 242, 318, 451, 535, 545
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	61, 241
LmnI	GCTCC	1 cut(s)	673
Lsp1109I	GCAGC	4 cut(s)	247, 371, 406, 427
LweI	GCATC	3 cut(s)	142, 142, 218
MaeI	CTAG	3 cut(s)	59, 72, 219
MaeIII	GTNAC	2 cut(s)	80, 585
MalI	GATC	2 cut(s)	63, 243
MboI	GATC	2 cut(s)	61, 241
MboII	GAAGA	5 cut(s)	27, 425, 494, 650, 677
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	398
MlsI	TGGCCA	1 cut(s)	530
MluCI	AATT	3 cut(s)	103, 466, 506
MluNI	TGGCCA	1 cut(s)	530
MlyI	GAGTC	4 cut(s)	18, 529, 593, 598
MnlI	CCTC	7 cut(s)	108, 320, 409, 450, 478, 495, 588
Mox20I	TGGCCA	1 cut(s)	530
MscI	TGGCCA	1 cut(s)	530
MseI	TTAA	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	530
MspCI	CTTAAG	1 cut(s)	10
MspI	CCGG	1 cut(s)	576
MspR9I	CCNGG	2 cut(s)	576, 577
Mva1269I	GAATGC	1 cut(s)	178
MwoI	GCNNNNNNNGC	2 cut(s)	139, 244
NciI	CCSGG	2 cut(s)	576, 577
NdeII	GATC	2 cut(s)	61, 241
NlaIII	CATG	6 cut(s)	142, 242, 318, 451, 535, 545
NlaIV	GGNNCC	1 cut(s)	462
NmeAIII	GCCGAG	1 cut(s)	635
NmuCI	GTSAC	2 cut(s)	80, 585
PcsI	WCGNNNNNNNCGW	1 cut(s)	277
PctI	GAATGC	1 cut(s)	178
PkrI	GCNGC	4 cut(s)	237, 361, 421, 442
PleI	GAGTC	4 cut(s)	18, 529, 592, 598
PpsI	GAGTC	4 cut(s)	18, 529, 592, 598
PspN4I	GGNNCC	1 cut(s)	462
PspPI	GGNCC	3 cut(s)	257, 573, 597
PsrI	GAACNNNNNNTAC	2 cut(s)	39, 71
PsuI	RGATCY	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	4 cut(s)	236, 360, 420, 441
Sau3AI	GATC	2 cut(s)	61, 241
Sau96I	GGNCC	3 cut(s)	257, 573, 597
SchI	GAGTC	4 cut(s)	18, 529, 593, 598
ScrFI	CCNGG	2 cut(s)	576, 577
SduI	GDGCHC	1 cut(s)	398
SetI	ASST	7 cut(s)	11, 196, 224, 331, 364, 477, 599
SfaNI	GCATC	3 cut(s)	142, 142, 218
SinI	GGWCC	1 cut(s)	597
SmaI	CCCGGG	1 cut(s)	577
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	3 cut(s)	103, 466, 506
SspMI	CTAG	3 cut(s)	59, 72, 219
StyD4I	CCNGG	2 cut(s)	574, 575
StyI	CCWWGG	1 cut(s)	71
TaaI	ACNGT	3 cut(s)	94, 400, 650
TaqI	TCGA	1 cut(s)	471
TaqII	GACCGA	1 cut(s)	186
TasI	AATT	3 cut(s)	103, 466, 506
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	1 cut(s)	403
TseFI	GTSAC	2 cut(s)	80, 585
TseI	GCWGC	4 cut(s)	235, 359, 419, 440
Tsp45I	GTSAC	2 cut(s)	80, 585
TspDTI	ATGAA	2 cut(s)	362, 436
TspMI	CCCGGG	1 cut(s)	575
TspRI	CASTG	1 cut(s)	403
Vha464I	CTTAAG	1 cut(s)	10
VpaK11BI	GGWCC	1 cut(s)	597
XapI	RAATTY	2 cut(s)	103, 506
XbaI	TCTAGA	1 cut(s)	58
XmaI	CCCGGG	1 cut(s)	575
XmaJI	CCTAGG	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	645
XspI	CTAG	3 cut(s)	59, 72, 219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.