Rh5DG270800

Ethylene-responsive transcription factor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003228
Physical Location & Seq
Forward (+)
32964159 .. 32964815
657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG270800.1

Sequence Viewer

Length: 657 bp
ATGGTGAGCTTAAGAAGGCGCAGGCTCTTGGGGCTATGCTCTGGGATAAGTTCTTTTCTAACTCCACTTCCTATGTTTTGTGATAGCGTGCATCCCAGGCCTTCAAAAGATAGAAATCTGCTAGATGGGAGTAATGGTGGAAAAATAGAACCTCTATCATCAACAGCATATGGTTCTAGCTTGGTGAAAGAGCAACCTCAAAAATATGTTCCATGGCCACCAATTAAACGCAGAAAGCTACATCGCAGGAAGCATATTCATAACCAAGAACCATGTCTAATGAGAGGTGTCTATTTCAAAAATATGAAATGGCAGGCAGCAATTAAGGTTGACAAGAAACAAATCCACTTGGGCACTGTTGGTTCACAAGAAGAGGTTGCTCATTTGTACGATAGGGCTGCTTTCATGTGTGGGAGGGAGCCAAATTTTGAGCTTCCTGAAGAAGAAAAGCAGGAACTGATGAAGTTCAAGTGGGATGAATTCTTGGCGGTGACTCGTCACTCCATTAACAACAAAAAGCTCAAGAAGTGGCAGTGGTCTGCCTCAGAAAAGAGGTCTGAGACACTTCCATTACAAGATGGTGACTGGGATGACAAGCAAGAAGTAAATGGTCTGTCAACTTCGGAAGATGGGGAGGAAGACACACGACTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

218

Amino Acids

25.28

Weight (kDa)

9.21

Isoelectric Point (pI)

62.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 488
AcoI YGGCCR 1 cut(s) 215
AcsI RAATTY 2 cut(s) 424, 479
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 1 cut(s) 389
AflII CTTAAG 1 cut(s) 10
AgsI TTSAA 3 cut(s) 105, 298, 469
AjnI CCWGG 1 cut(s) 95
AluBI AGCT 5 cut(s) 9, 180, 238, 433, 520
AluI AGCT 5 cut(s) 9, 180, 238, 433, 520
Alw26I GTCTC 1 cut(s) 554
AlwNI CAGNNNCTG 1 cut(s) 457
AoxI GGCC 2 cut(s) 98, 215
ApeKI GCWGC 2 cut(s) 317, 398
ApoI RAATTY 2 cut(s) 424, 479
AspLEI GCGC 1 cut(s) 21
AsuHPI GGTGA 4 cut(s) 16, 196, 502, 593
BaeGI GKGCMC 1 cut(s) 356
BalI TGGCCA 1 cut(s) 217
BbsI GAAGAC 1 cut(s) 645
BbvI GCAGC 2 cut(s) 329, 385
BccI CCATC 3 cut(s) 119, 572, 623
BcgI CGANNNNNNTGC 2 cut(s) 380, 414
BciT130I CCWGG 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 554
BfaI CTAG 2 cut(s) 122, 177
BfrI CTTAAG 1 cut(s) 10
BisI GCNGC 2 cut(s) 318, 399
BlsI GCNGC 2 cut(s) 319, 400
Bme1390I CCNGG 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 420
BmrFI CCNGG 1 cut(s) 97
BmrI ACTGGG 1 cut(s) 595
BmsI GCATC 1 cut(s) 100
BmuI ACTGGG 1 cut(s) 595
BpiI GAAGAC 1 cut(s) 645
BpuEI CTTGAG 1 cut(s) 506
BsaBI GATNNNNATC 1 cut(s) 114
BsaJI CCNNGG 2 cut(s) 95, 212
BsaXI ACNNNNNCTCC 2 cut(s) 121, 151
Bse1I ACTGG 1 cut(s) 590
Bse8I GATNNNNATC 1 cut(s) 114
BseBI CCWGG 1 cut(s) 97
BseDI CCNNGG 2 cut(s) 95, 212
BseGI GGATG 3 cut(s) 91, 481, 595
BseJI GATNNNNATC 1 cut(s) 114
BseMII CTCAG 2 cut(s) 549, 558
BseNI ACTGG 1 cut(s) 590
BseSI GKGCMC 1 cut(s) 356
BseXI GCAGC 2 cut(s) 329, 385
BshFI GGCC 2 cut(s) 100, 217
BsmAI GTCTC 1 cut(s) 554
BsnI GGCC 2 cut(s) 100, 217
Bsp1286I GDGCHC 1 cut(s) 356
Bsp19I CCATGG 1 cut(s) 212
BspACI CCGC 1 cut(s) 488
BspANI GGCC 2 cut(s) 100, 217
BspCNI CTCAG 2 cut(s) 550, 557
BspLI GGNNCC 1 cut(s) 420
BspTI CTTAAG 1 cut(s) 10
BsrI ACTGG 1 cut(s) 590
BssECI CCNNGG 2 cut(s) 95, 212
BssT1I CCWWGG 1 cut(s) 212
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 358
Bst6I CTCTTC 1 cut(s) 366
BstAFI CTTAAG 1 cut(s) 10
BstC8I GCNNGC 3 cut(s) 23, 89, 315
BstDEI CTNAG 2 cut(s) 544, 558
BstDSI CCRYGG 1 cut(s) 212
BstF5I GGATG 3 cut(s) 91, 481, 595
BstHHI GCGC 1 cut(s) 21
BstMAI GTCTC 1 cut(s) 554
BstMWI GCNNNNNNNGC 2 cut(s) 31, 97
BstNI CCWGG 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 95
BstSLI GKGCMC 1 cut(s) 356
BstV1I GCAGC 2 cut(s) 329, 385
BstV2I GAAGAC 1 cut(s) 645
BsuRI GGCC 2 cut(s) 100, 217
BtgI CCRYGG 1 cut(s) 212
BtgZI GCGATG 1 cut(s) 227
BtsCI GGATG 3 cut(s) 91, 481, 595
BtsI GCAGTG 1 cut(s) 539
BtsIMutI CAGTG 2 cut(s) 354, 539
Cac8I GCNNGC 3 cut(s) 23, 89, 315
CaiI CAGNNNCTG 1 cut(s) 457
CfoI GCGC 1 cut(s) 21
Csp6I GTAC 1 cut(s) 388
CviAII CATG 3 cut(s) 213, 273, 406
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 2 cut(s) 544, 558
EaeI YGGCCR 1 cut(s) 215
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
Eco130I CCWWGG 1 cut(s) 212
Eco147I AGGCCT 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 459
EcoRI GAATTC 1 cut(s) 479
EcoRII CCWGG 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 212
ErhI CCWWGG 1 cut(s) 212
FaeI CATG 3 cut(s) 216, 276, 409
FatI CATG 3 cut(s) 212, 272, 405
FauNDI CATATG 1 cut(s) 169
Fnu4HI GCNGC 2 cut(s) 318, 399
FokI GGATG 3 cut(s) 78, 488, 602
Fsp4HI GCNGC 2 cut(s) 318, 399
FspBI CTAG 2 cut(s) 122, 177
GlaI GCGC 1 cut(s) 20
GluI GCNGC 2 cut(s) 318, 399
HaeIII GGCC 2 cut(s) 100, 217
HhaI GCGC 1 cut(s) 21
Hin1II CATG 3 cut(s) 216, 276, 409
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HincII GTYRAC 2 cut(s) 331, 618
HindII GTYRAC 2 cut(s) 331, 618
HinfI GANTC 2 cut(s) 493, 648
HphI GGTGA 4 cut(s) 16, 196, 502, 593
Hpy166II GTNNAC 3 cut(s) 331, 365, 618
Hpy188I TCNGA 3 cut(s) 547, 559, 625
Hpy188III TCNNGA 3 cut(s) 437, 523, 654
Hpy8I GTNNAC 3 cut(s) 331, 365, 618
HpyAV CCTTC 2 cut(s) 9, 111
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4V TGCA 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 97
HpyF3I CTNAG 2 cut(s) 544, 558
Hsp92II CATG 3 cut(s) 216, 276, 409
HspAI GCGC 1 cut(s) 19
LmnI GCTCC 1 cut(s) 418
LpnPI CCDG 9 cut(s) 7, 27, 82, 109, 232, 299, 437, 450, 571
Lsp1109I GCAGC 2 cut(s) 329, 385
LweI GCATC 1 cut(s) 100
MaeI CTAG 2 cut(s) 122, 177
MaeIII GTNAC 3 cut(s) 490, 497, 581
MboII GAAGA 5 cut(s) 383, 452, 455, 638, 650
MhlI GDGCHC 1 cut(s) 356
MlsI TGGCCA 1 cut(s) 217
MluCI AATT 4 cut(s) 222, 321, 424, 479
MluNI TGGCCA 1 cut(s) 217
MlyI GAGTC 2 cut(s) 487, 642
MnlI CCTC 8 cut(s) 162, 207, 278, 367, 408, 546, 553, 628
Mox20I TGGCCA 1 cut(s) 217
MscI TGGCCA 1 cut(s) 217
MseI TTAA 4 cut(s) 11, 225, 324, 507
Msp20I TGGCCA 1 cut(s) 217
MspCI CTTAAG 1 cut(s) 10
MspR9I CCNGG 1 cut(s) 97
MvaI CCWGG 1 cut(s) 97
MwoI GCNNNNNNNGC 2 cut(s) 31, 97
NcoI CCATGG 1 cut(s) 212
NdeI CATATG 1 cut(s) 169
NlaIII CATG 3 cut(s) 216, 276, 409
NlaIV GGNNCC 1 cut(s) 420
NmuCI GTSAC 3 cut(s) 490, 497, 581
PceI AGGCCT 1 cut(s) 100
PkrI GCNGC 2 cut(s) 319, 400
PleI GAGTC 2 cut(s) 487, 642
PpsI GAGTC 2 cut(s) 487, 642
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 420
PstNI CAGNNNCTG 1 cut(s) 457
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
SaqAI TTAA 4 cut(s) 11, 225, 324, 507
SatI GCNGC 2 cut(s) 318, 399
SchI GAGTC 2 cut(s) 487, 642
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 1 cut(s) 356
SfaNI GCATC 1 cut(s) 100
SmlI CTYRAG 2 cut(s) 10, 521
SmoI CTYRAG 2 cut(s) 10, 521
Sse9I AATT 4 cut(s) 222, 321, 424, 479
SseBI AGGCCT 1 cut(s) 100
SsiI CCGC 1 cut(s) 488
SspMI CTAG 2 cut(s) 122, 177
StuI AGGCCT 1 cut(s) 100
StyD4I CCNGG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 212
TaaI ACNGT 1 cut(s) 358
TasI AATT 4 cut(s) 222, 321, 424, 479
Tru1I TTAA 4 cut(s) 11, 225, 324, 507
Tru9I TTAA 4 cut(s) 11, 225, 324, 507
TscAI CASTG 2 cut(s) 361, 539
TseFI GTSAC 3 cut(s) 490, 497, 581
TseI GCWGC 2 cut(s) 317, 398
Tsp45I GTSAC 3 cut(s) 490, 497, 581
TspDTI ATGAA 5 cut(s) 248, 320, 394, 476, 492
TspRI CASTG 2 cut(s) 361, 539
Vha464I CTTAAG 1 cut(s) 10
XapI RAATTY 2 cut(s) 424, 479
XspI CTAG 2 cut(s) 122, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.