Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003228

Physical Location & Seq

Genomic Coordinates Forward (+)

46756254 .. 46760983

Gene Structure 4730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG273300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGAAATATTTCAAATAATATTCAATGCTTATAAATATTTTTCAGGTGTTGAATTGGTTTTGGGATTTAAGCCACTGTTACAGCGAATTCTAATGCACAATATGCTATTTACAGGGCCACCAATTAAACGCAGAAAGCGACATCGCAGGAAGCATATTCATAACCAAGAACCATGTCTAATGAGAGGTGTCTATTTCAAAAATATGAAATGGCAGGCAGCAATTAAGGTTGACAAGAAACAAATCCACTTGGGCACTGTTGGTTCACAAGAAGAGGCTGCTCATTTGTACGATAGGGCTGCTTTCATGTGTGGGAGGGAGCCAAATTTTGAGCTTCCTGAAGAGGAGAAGCAGGAACTGATGAAGTTCAAGTGGGATGAATTCTTGGCGGTGACTCGTCACTCCATTAACAACAAAAGTTGGTTTCCTTTCTTGTCTTGTCTAACATTCCTCAGGCCTTTATGTGCCACAGATCTTAATAGTTTGCTTTCACAAAATATTTCAGAGCTCAAGAAGTGGCAGTGGTCTGCCTCAGAAAAGAGGTCTGAGACACCTCCATTACAAGATGGTGACTGGGATGACAAGCAAGAAGTAAATGGTCTGTCAACTTCGGAAGATGGGGAGGAAGACACACGACTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

214

Amino Acids

25.19

Weight (kDa)

8.29

Isoelectric Point (pI)

62.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040
fragaria_vesca	FvH4_2g18520
malus_domestica	MD05G1171400.v1.1 MD10G1039600.v1.1 MD10G1159600.v1.1
prunus_persica	Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1
pyrus_communis	pycom05g15810 pycom10g13780
rosa_chinensis	RchiOBHm_Chr3g0472871 RchiOBHm_Chr6g0284081
rosa_laevigata	RLG00000012771
rosa_multiflora	Rmu_sc0015649.1_g000011
rosa_roxburghii	Rroxscaffold_7G00184950
rosa_rugosa	Rorug04G0064700 Rorug06G0160300 Rorug06G0160400 Rorug06G0160500
rosa_samantha	Rh5BG215100 Rh5BG429800 Rh5CG453400 Rh5DG270800 Rh6AG273300 Rh6BG274000 Rh6CG275400 Rh6DG268400
rosa_wichuraiana	Rw6G023520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	33
AciI	CCGC	1 cut(s)	389
AcsI	RAATTY	3 cut(s)	87, 325, 380
AcuI	CTGAAG	1 cut(s)	360
AfaI	GTAC	1 cut(s)	290
AgsI	TTSAA	5 cut(s)	14, 25, 53, 199, 370
AluBI	AGCT	2 cut(s)	334, 508
AluI	AGCT	2 cut(s)	334, 508
Alw21I	GWGCWC	1 cut(s)	510
Alw26I	GTCTC	1 cut(s)	542
AlwNI	CAGNNNCTG	1 cut(s)	358
AoxI	GGCC	2 cut(s)	116, 455
ApeKI	GCWGC	3 cut(s)	218, 278, 299
ApoI	RAATTY	3 cut(s)	87, 325, 380
Asp700I	GAANNNNTTC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	116
AsuHPI	GGTGA	2 cut(s)	403, 581
AxyI	CCTNAGG	1 cut(s)	452
BaeGI	GKGCMC	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	510
BbsI	GAAGAC	1 cut(s)	633
Bbv12I	GWGCWC	1 cut(s)	510
BbvI	GCAGC	3 cut(s)	230, 265, 286
BccI	CCATC	2 cut(s)	560, 611
BcgI	CGANNNNNNTGC	2 cut(s)	281, 315
BcoDI	GTCTC	1 cut(s)	542
BglII	AGATCT	1 cut(s)	472
BisI	GCNGC	3 cut(s)	219, 279, 300
BlsI	GCNGC	3 cut(s)	220, 280, 301
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	321
BmrI	ACTGGG	1 cut(s)	583
BmuI	ACTGGG	1 cut(s)	583
BpiI	GAAGAC	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	494
Bse1I	ACTGG	1 cut(s)	578
Bse21I	CCTNAGG	1 cut(s)	452
BseGI	GGATG	2 cut(s)	382, 583
BseMII	CTCAG	3 cut(s)	466, 537, 546
BseNI	ACTGG	1 cut(s)	578
BseRI	GAGGAG	1 cut(s)	359
BseSI	GKGCMC	1 cut(s)	257
BseXI	GCAGC	3 cut(s)	230, 265, 286
BshFI	GGCC	2 cut(s)	118, 457
BsiHKAI	GWGCWC	1 cut(s)	510
BsmAI	GTCTC	1 cut(s)	542
BsnI	GGCC	2 cut(s)	118, 457
Bsp1286I	GDGCHC	2 cut(s)	257, 510
Bsp143I	GATC	1 cut(s)	472
BspACI	CCGC	1 cut(s)	389
BspANI	GGCC	2 cut(s)	118, 457
BspCNI	CTCAG	3 cut(s)	465, 538, 545
BspLI	GGNNCC	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	578
BssMI	GATC	1 cut(s)	472
Bst4CI	ACNGT	2 cut(s)	78, 259
Bst6I	CTCTTC	2 cut(s)	267, 336
BstAPI	GCANNNNNTGC	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	3 cut(s)	452, 532, 546
BstF5I	GGATG	2 cut(s)	382, 583
BstKTI	GATC	1 cut(s)	475
BstMAI	GTCTC	1 cut(s)	542
BstMBI	GATC	1 cut(s)	472
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstSLI	GKGCMC	1 cut(s)	257
BstV1I	GCAGC	3 cut(s)	230, 265, 286
BstV2I	GAAGAC	1 cut(s)	633
BstX2I	RGATCY	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	472
Bsu36I	CCTNAGG	1 cut(s)	452
BsuRI	GGCC	2 cut(s)	118, 457
BtgZI	GCGATG	1 cut(s)	128
BtsCI	GGATG	2 cut(s)	382, 583
BtsI	GCAGTG	1 cut(s)	527
BtsIMutI	CAGTG	3 cut(s)	74, 255, 527
Cac8I	GCNNGC	1 cut(s)	216
CaiI	CAGNNNCTG	1 cut(s)	358
Cfr13I	GGNCC	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	2 cut(s)	174, 307
CviJI	RGCY	8 cut(s)	73, 118, 278, 299, 322, 334, 457, 508
CviKI_1	RGCY	8 cut(s)	73, 118, 278, 299, 322, 334, 457, 508
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	3 cut(s)	452, 532, 546
DpnI	GATC	1 cut(s)	474
DpnII	GATC	1 cut(s)	472
Eam1104I	CTCTTC	2 cut(s)	267, 336
EarI	CTCTTC	2 cut(s)	267, 336
Ecl136II	GAGCTC	1 cut(s)	508
Eco147I	AGGCCT	1 cut(s)	457
Eco24I	GRGCYC	1 cut(s)	510
Eco53kI	GAGCTC	1 cut(s)	508
Eco57I	CTGAAG	1 cut(s)	360
Eco81I	CCTNAGG	1 cut(s)	452
EcoICRI	GAGCTC	1 cut(s)	508
EcoRI	GAATTC	2 cut(s)	87, 380
EcoT38I	GRGCYC	1 cut(s)	510
FaeI	CATG	2 cut(s)	177, 310
FaiI	YATR	8 cut(s)	33, 104, 156, 162, 175, 206, 308, 463
FatI	CATG	2 cut(s)	173, 306
Fnu4HI	GCNGC	3 cut(s)	219, 279, 300
FokI	GGATG	2 cut(s)	389, 590
FriOI	GRGCYC	1 cut(s)	510
Fsp4HI	GCNGC	3 cut(s)	219, 279, 300
GluI	GCNGC	3 cut(s)	219, 279, 300
HaeIII	GGCC	2 cut(s)	118, 457
Hin1II	CATG	2 cut(s)	177, 310
HincII	GTYRAC	2 cut(s)	232, 606
HindII	GTYRAC	2 cut(s)	232, 606
HinfI	GANTC	2 cut(s)	394, 636
HphI	GGTGA	2 cut(s)	403, 581
Hpy166II	GTNNAC	3 cut(s)	232, 266, 606
Hpy188I	TCNGA	4 cut(s)	505, 535, 547, 613
Hpy188III	TCNNGA	3 cut(s)	338, 511, 642
Hpy8I	GTNNAC	3 cut(s)	232, 266, 606
HpyCH4III	ACNGT	2 cut(s)	78, 259
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
HpyF3I	CTNAG	3 cut(s)	452, 532, 546
Hsp92II	CATG	2 cut(s)	177, 310
Kzo9I	GATC	1 cut(s)	472
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	8 cut(s)	30, 99, 133, 200, 338, 351, 439, 559
Lsp1109I	GCAGC	3 cut(s)	230, 265, 286
MaeIII	GTNAC	4 cut(s)	78, 391, 398, 569
MalI	GATC	1 cut(s)	474
MboI	GATC	1 cut(s)	472
MboII	GAAGA	4 cut(s)	284, 353, 626, 638
MflI	RGATCY	1 cut(s)	472
MhlI	GDGCHC	2 cut(s)	257, 510
MluCI	AATT	6 cut(s)	53, 87, 123, 222, 325, 380
MlyI	GAGTC	2 cut(s)	388, 630
MnlI	CCTC	9 cut(s)	179, 268, 309, 337, 461, 534, 541, 564, 616
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	5 cut(s)	69, 126, 225, 408, 477
MwoI	GCNNNNNNNGC	1 cut(s)	103
NdeII	GATC	1 cut(s)	472
NlaIII	CATG	2 cut(s)	177, 310
NlaIV	GGNNCC	1 cut(s)	321
NmuCI	GTSAC	3 cut(s)	391, 398, 569
PceI	AGGCCT	1 cut(s)	457
PcsI	WCGNNNNNNNCGW	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	9
PkrI	GCNGC	3 cut(s)	220, 280, 301
PleI	GAGTC	2 cut(s)	388, 630
PpsI	GAGTC	2 cut(s)	388, 630
PsiI	TTATAA	1 cut(s)	33
Psp124BI	GAGCTC	1 cut(s)	510
PspN4I	GGNNCC	1 cut(s)	321
PspPI	GGNCC	1 cut(s)	116
PstNI	CAGNNNCTG	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	472
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SacI	GAGCTC	1 cut(s)	510
SaqAI	TTAA	5 cut(s)	69, 126, 225, 408, 477
SatI	GCNGC	3 cut(s)	219, 279, 300
Sau3AI	GATC	1 cut(s)	472
Sau96I	GGNCC	1 cut(s)	116
SchI	GAGTC	2 cut(s)	388, 630
SduI	GDGCHC	2 cut(s)	257, 510
SetI	ASST	7 cut(s)	49, 190, 231, 336, 510, 545, 556
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
Sse9I	AATT	6 cut(s)	53, 87, 123, 222, 325, 380
SseBI	AGGCCT	1 cut(s)	457
SsiI	CCGC	1 cut(s)	389
SspI	AATATT	4 cut(s)	9, 21, 38, 499
SstI	GAGCTC	1 cut(s)	510
StuI	AGGCCT	1 cut(s)	457
TaaI	ACNGT	2 cut(s)	78, 259
TasI	AATT	6 cut(s)	53, 87, 123, 222, 325, 380
Tru1I	TTAA	5 cut(s)	69, 126, 225, 408, 477
Tru9I	TTAA	5 cut(s)	69, 126, 225, 408, 477
TscAI	CASTG	3 cut(s)	81, 262, 527
TseFI	GTSAC	3 cut(s)	391, 398, 569
TseI	GCWGC	3 cut(s)	218, 278, 299
Tsp45I	GTSAC	3 cut(s)	391, 398, 569
TspDTI	ATGAA	5 cut(s)	149, 221, 295, 377, 393
TspRI	CASTG	3 cut(s)	81, 262, 527
XapI	RAATTY	3 cut(s)	87, 325, 380
XmnI	GAANNNNTTC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.