Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003228

Physical Location & Seq

Genomic Coordinates Forward (+)

19312214 .. 19314685

Gene Structure 2472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g15810.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGTGAGCTTAAGAAGGCGCAGACTGTTGGGATTGGGACTATGCTGTGAGATACCTCCGGTTCTGGATCCACTTCCTAGGGTTGTCAACAATGGAACCACTTCTCAAAATTTCACCCGTACGAATCCTGTCAGTGTGCATCCCATGCCTGCAAATGATGTAAATCAACCAGATGGGAATACCATTGTGAAAGCAGAATTTCGATCCTCAACTGCATCTGGTTCTAGCTTATCCAAAGAGCAGCACGATGTGGCAGGGCCACCAATCAAACGCAGAAAGCGACATCGCAGAAAGCATGCTCAGAACCAGGAACCATGTCTAATGAGAGGTGTCTATTTCAAGAATATGAAGTGGCAGGCAGCAATAAAAGTTGACAAGAAACAAATCCACTTAGGCACTGTTGGTTCACAAGAAGAGGCTGCCCATTTGTACGACAGGGCAGCTTTCATGTGTGGGAGGGAACCAAATTTCGATCTTTCTGAGGAGGAGAAGAAAGAACTCAGGAAATTCAAGTGGGACGAATTCTTGGCCATGACTCGTCATGCAATTACCAACAAAATTCAGAGCACCGGAGAAGGTCAGGGGCAGAGTCAGAGAAGAGGTCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

203

Amino Acids

22.88

Weight (kDa)

9.97

Isoelectric Point (pI)

54.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040 AT4G13040
fragaria_vesca	FvH4_2g18520
malus_domestica	MD05G1171400.v1.1 MD10G1039600.v1.1 MD10G1159600.v1.1
prunus_persica	Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1 Prupe.8G198700_v2.0.a1
pyrus_communis	pycom05g15810 pycom10g13780
rosa_chinensis	RchiOBHm_Chr3g0472871 RchiOBHm_Chr6g0284081
rosa_laevigata	RLG00000012771
rosa_multiflora	Rmu_sc0015649.1_g000011
rosa_roxburghii	Rroxscaffold_7G00184950
rosa_rugosa	Rorug04G0064700 Rorug06G0160300 Rorug06G0160400 Rorug06G0160500
rosa_samantha	Rh5BG215100 Rh5BG429800 Rh5CG453400 Rh5DG270800 Rh6AG273300 Rh6BG274000 Rh6CG275400 Rh6DG268400
rosa_wichuraiana	Rw6G023520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	62, 75, 198
AcoI	YGGCCR	1 cut(s)	528
AcsI	RAATTY	6 cut(s)	109, 197, 466, 506, 521, 558
AdeI	CACNNNGTG	1 cut(s)	250
AfaI	GTAC	2 cut(s)	121, 431
AflII	CTTAAG	1 cut(s)	10
AgsI	TTSAA	2 cut(s)	340, 511
AjnI	CCWGG	1 cut(s)	306
AluBI	AGCT	3 cut(s)	9, 228, 443
AluI	AGCT	3 cut(s)	9, 228, 443
Alw21I	GWGCWC	1 cut(s)	569
AlwI	GGATC	3 cut(s)	62, 75, 198
AoxI	GGCC	2 cut(s)	257, 528
ApeKI	GCWGC	4 cut(s)	241, 359, 419, 440
ApoI	RAATTY	6 cut(s)	109, 197, 466, 506, 521, 558
Asp700I	GAANNNNTTC	1 cut(s)	100
AspA2I	CCTAGG	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	2 cut(s)	257, 602
AsuHPI	GGTGA	2 cut(s)	16, 106
AvaII	GGWCC	1 cut(s)	602
AvrII	CCTAGG	1 cut(s)	77
BalI	TGGCCA	1 cut(s)	530
BamHI	GGATCC	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	569
BbvI	GCAGC	4 cut(s)	253, 371, 406, 452
BccI	CCATC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	308
BfaI	CTAG	2 cut(s)	78, 225
BfrI	CTTAAG	1 cut(s)	10
BisI	GCNGC	4 cut(s)	242, 360, 420, 441
BlnI	CCTAGG	1 cut(s)	77
BlsI	GCNGC	4 cut(s)	243, 361, 421, 442
Bme1390I	CCNGG	1 cut(s)	308
Bme18I	GGWCC	1 cut(s)	602
BmgT120I	GGNCC	2 cut(s)	257, 602
BmiI	GGNNCC	4 cut(s)	69, 97, 312, 462
BmrFI	CCNGG	1 cut(s)	308
BmsI	GCATC	2 cut(s)	148, 224
BsaBI	GATNNNNATC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	77
BsaWI	WCCGGW	2 cut(s)	58, 569
Bse8I	GATNNNNATC	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	1 cut(s)	77
BseGI	GGATG	1 cut(s)	139
BseJI	GATNNNNATC	1 cut(s)	162
BseMII	CTCAG	3 cut(s)	314, 471, 514
BseRI	GAGGAG	2 cut(s)	497, 500
BseXI	GCAGC	4 cut(s)	253, 371, 406, 452
BshFI	GGCC	2 cut(s)	259, 530
BsiHKAI	GWGCWC	1 cut(s)	569
BsiSI	CCGG	2 cut(s)	59, 570
BsiWI	CGTACG	1 cut(s)	119
BslFI	GGGAC	2 cut(s)	51, 530
BsmFI	GGGAC	2 cut(s)	51, 530
BsnI	GGCC	2 cut(s)	259, 530
Bsp1286I	GDGCHC	1 cut(s)	569
Bsp143I	GATC	3 cut(s)	67, 203, 472
BspANI	GGCC	2 cut(s)	259, 530
BspCNI	CTCAG	3 cut(s)	313, 472, 513
BspLI	GGNNCC	4 cut(s)	69, 97, 312, 462
BspPI	GGATC	3 cut(s)	62, 75, 198
BspTI	CTTAAG	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	3 cut(s)	67, 203, 472
BssT1I	CCWWGG	1 cut(s)	77
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	27, 400
Bst6I	CTCTTC	2 cut(s)	408, 592
BstAFI	CTTAAG	1 cut(s)	10
BstAPI	GCANNNNNTGC	1 cut(s)	145
BstC8I	GCNNGC	3 cut(s)	150, 297, 357
BstDEI	CTNAG	4 cut(s)	300, 391, 480, 500
BstF5I	GGATG	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	3 cut(s)	70, 206, 475
BstMBI	GATC	3 cut(s)	67, 203, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNI	CCWGG	1 cut(s)	308
BstNSI	RCATGY	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	306
BstV1I	GCAGC	4 cut(s)	253, 371, 406, 452
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuRI	GGCC	2 cut(s)	259, 530
BtgZI	GCGATG	1 cut(s)	269
BtsCI	GGATG	1 cut(s)	139
BtsIMutI	CAGTG	2 cut(s)	139, 396
Cac8I	GCNNGC	3 cut(s)	150, 297, 357
CfoI	GCGC	1 cut(s)	21
Cfr13I	GGNCC	2 cut(s)	257, 602
Csp6I	GTAC	2 cut(s)	120, 430
CviAII	CATG	6 cut(s)	145, 296, 315, 448, 532, 542
CviJI	RGCY	6 cut(s)	9, 228, 259, 419, 443, 530
CviKI_1	RGCY	6 cut(s)	9, 228, 259, 419, 443, 530
CviQI	GTAC	2 cut(s)	120, 430
DdeI	CTNAG	4 cut(s)	300, 391, 480, 500
DpnI	GATC	3 cut(s)	69, 205, 474
DpnII	GATC	3 cut(s)	67, 203, 472
DraIII	CACNNNGTG	1 cut(s)	250
EaeI	YGGCCR	1 cut(s)	528
Eam1104I	CTCTTC	2 cut(s)	408, 592
EarI	CTCTTC	2 cut(s)	408, 592
Eco130I	CCWWGG	1 cut(s)	77
Eco47I	GGWCC	1 cut(s)	602
EcoRI	GAATTC	1 cut(s)	521
EcoRII	CCWGG	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	77
FaeI	CATG	6 cut(s)	148, 299, 318, 451, 535, 545
FaiI	YATR	8 cut(s)	43, 146, 297, 316, 347, 449, 533, 543
FaqI	GGGAC	2 cut(s)	51, 530
FatI	CATG	6 cut(s)	144, 295, 314, 447, 531, 541
Fnu4HI	GCNGC	4 cut(s)	242, 360, 420, 441
FokI	GGATG	1 cut(s)	126
Fsp4HI	GCNGC	4 cut(s)	242, 360, 420, 441
FspBI	CTAG	2 cut(s)	78, 225
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	4 cut(s)	242, 360, 420, 441
HaeIII	GGCC	2 cut(s)	259, 530
HapII	CCGG	2 cut(s)	59, 570
HhaI	GCGC	1 cut(s)	21
Hin1II	CATG	6 cut(s)	148, 299, 318, 451, 535, 545
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HincII	GTYRAC	2 cut(s)	88, 373
HindII	GTYRAC	2 cut(s)	88, 373
HinfI	GANTC	3 cut(s)	124, 535, 589
HpaII	CCGG	2 cut(s)	59, 570
HphI	GGTGA	2 cut(s)	16, 106
Hpy166II	GTNNAC	3 cut(s)	88, 373, 407
Hpy188I	TCNGA	4 cut(s)	303, 481, 564, 594
Hpy188III	TCNNGA	3 cut(s)	65, 340, 502
Hpy8I	GTNNAC	3 cut(s)	88, 373, 407
HpyAV	CCTTC	2 cut(s)	9, 569
HpyCH4III	ACNGT	2 cut(s)	27, 400
HpyCH4V	TGCA	4 cut(s)	139, 152, 215, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	4 cut(s)	300, 391, 480, 500
Hsp92II	CATG	6 cut(s)	148, 299, 318, 451, 535, 545
HspAI	GCGC	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	67, 203, 472
Lsp1109I	GCAGC	4 cut(s)	253, 371, 406, 452
LweI	GCATC	2 cut(s)	148, 224
MaeI	CTAG	2 cut(s)	78, 225
MalI	GATC	3 cut(s)	69, 205, 474
MboI	GATC	3 cut(s)	67, 203, 472
MboII	GAAGA	3 cut(s)	425, 502, 609
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	569
MlsI	TGGCCA	1 cut(s)	530
MluCI	AATT	7 cut(s)	109, 197, 466, 506, 521, 546, 558
MluNI	TGGCCA	1 cut(s)	530
MlyI	GAGTC	2 cut(s)	529, 598
MnlI	CCTC	8 cut(s)	66, 217, 320, 409, 450, 475, 478, 593
Mox20I	TGGCCA	1 cut(s)	530
MroXI	GAANNNNTTC	1 cut(s)	100
MscI	TGGCCA	1 cut(s)	530
MseI	TTAA	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	530
MspCI	CTTAAG	1 cut(s)	10
MspI	CCGG	2 cut(s)	59, 570
MspR9I	CCNGG	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	1 cut(s)	145
NdeII	GATC	3 cut(s)	67, 203, 472
NlaIII	CATG	6 cut(s)	148, 299, 318, 451, 535, 545
NlaIV	GGNNCC	4 cut(s)	69, 97, 312, 462
NspI	RCATGY	1 cut(s)	299
PaeI	GCATGC	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	1 cut(s)	277
PdmI	GAANNNNTTC	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	124
Pfl23II	CGTACG	1 cut(s)	119
PkrI	GCNGC	4 cut(s)	243, 361, 421, 442
PleI	GAGTC	2 cut(s)	529, 597
PpsI	GAGTC	2 cut(s)	529, 597
Psp6I	CCWGG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	306
PspLI	CGTACG	1 cut(s)	119
PspN4I	GGNNCC	4 cut(s)	69, 97, 312, 462
PspPI	GGNCC	2 cut(s)	257, 602
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	2 cut(s)	121, 431
RsaNI	GTAC	2 cut(s)	120, 430
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	4 cut(s)	242, 360, 420, 441
Sau3AI	GATC	3 cut(s)	67, 203, 472
Sau96I	GGNCC	2 cut(s)	257, 602
SchI	GAGTC	2 cut(s)	529, 598
ScrFI	CCNGG	1 cut(s)	308
SduI	GDGCHC	1 cut(s)	569
SetI	ASST	7 cut(s)	11, 58, 230, 331, 445, 580, 604
SfaNI	GCATC	2 cut(s)	148, 224
SinI	GGWCC	1 cut(s)	602
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
SphI	GCATGC	1 cut(s)	299
Sse9I	AATT	7 cut(s)	109, 197, 466, 506, 521, 546, 558
SspMI	CTAG	2 cut(s)	78, 225
StyD4I	CCNGG	1 cut(s)	306
StyI	CCWWGG	1 cut(s)	77
TaaI	ACNGT	2 cut(s)	27, 400
TaqI	TCGA	2 cut(s)	202, 471
TasI	AATT	7 cut(s)	109, 197, 466, 506, 521, 546, 558
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	2 cut(s)	139, 403
TseI	GCWGC	4 cut(s)	241, 359, 419, 440
TspDTI	ATGAA	2 cut(s)	362, 436
TspGWI	ACGGA	1 cut(s)	594
TspRI	CASTG	2 cut(s)	139, 403
Vha464I	CTTAAG	1 cut(s)	10
VpaK11BI	GGWCC	1 cut(s)	602
XapI	RAATTY	6 cut(s)	109, 197, 466, 506, 521, 558
XceI	RCATGY	1 cut(s)	299
XmaJI	CCTAGG	1 cut(s)	77
XmnI	GAANNNNTTC	1 cut(s)	100
XspI	CTAG	2 cut(s)	78, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.