Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000986

Physical Location & Seq

Genomic Coordinates Forward (+)

22850539 .. 22853883

Gene Structure 3345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0160300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTTTCCTCATCTCAAGTTTCCCAAACGCTTCAGTTTGACGGCTTCAATAGATTGGTTTTACCGCCATTATTTTGTCAATGCTGGTCTTCGGTCTGTGATAACTGATCTAGGTGATGGTGATGACACCAACATGCATTGTTGGGTGCCTAAGATTCATAAACCATTCAAACCCAACATCATCTTGATTCATGGGTTCGGAGCCAATGCAATGTGGCAGTACGGTGAGCACATTCGTCATTTCACCTCTCATTTTAACGTCTACGTGCCCGATCTTGTTTTCTTTGGAAACTCTTACACGTCCAGCCAAGAACGAACTGATTTGTTCCAGGCTACATGTGTAATTAAGTTGATGCAGGCCCATAGGGTTGAAAAGACAAGCGTTGTTGGGATAAGTTATGGTGGATTTGTGGGGTATAGTATAGCGGTGCAATGTCCGGAGATGGTAGAAAAGTTGGTATTGTGTTGTGCTGGAGTTTGCATGGAGGAGAAAGATATGGAAGATGGACTGTTTAATGTTTCTAATTTAGAGGAGGCTTCAAGTATTTTGTTACCACAGACACCTCAAAAATTGAAGGAACTAATGCGATATTCATTCTTCAAGCCTGCTAAGGCCATCCCTTCTTTTTTCCTCACCGATTTTATTAAAGTAATGTGTACGAACAATGTTGAAGAGAAGAGAGAGTTGATTGGGGCAATATTGGTGAACCGAAAAATGTCTAATGTACCCAAGATCTCGCAGCCCACATTAATAATATGGGGAGAGCAAGATCAAATATTCCCTTTAGAACTGGGTTACAGATTAAAAAGCATTGCTGGCATTTGCCTCCTGTTTGTTGGGCACTCGTTTTGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

285

Amino Acids

32.51

Weight (kDa)

7.6

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	58 - 270	7.7e-17	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	60 - 268	3e-09	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11765 AT1G28305 AT1G28306 AT2G06090 AT2G23142 AT2G23148 AT2G24870 AT2G24880 AT3G10460 AT3G26860 AT3G26860 AT3G26870 AT3G26880 AT3G27329 AT3G27331 AT3G27680 AT4G10895 AT4G29037 AT5G04047 AT5G04347 AT5G04347 AT5G04350 AT5G27238 AT5G38435 AT5G38440
fragaria_vesca	FvH4_2g19740 FvH4_3g21860 FvH4_4g05400
malus_domestica	MD05G1181700.v1.1 MD13G1110700.v1.1
prunus_persica	Prupe.1G059400_v2.0.a1 Prupe.1G059600_v2.0.a1 Prupe.1G219300_v2.0.a1 Prupe.1G219600_v2.0.a1 Prupe.1G219700_v2.0.a1 Prupe.8G208500_v2.0.a1 Prupe.8G208600_v2.0.a1 Prupe.8G208800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396541 RchiOBHm_Chr4g0396551
rosa_laevigata	RLG00000009525 RLG00000009526 RLG00000012772 RLG00000013033
rosa_multiflora	Rmu_sc0001781.1_g000005 Rmu_sc0001781.1_g000008 Rmu_sc0002909.1_g000007
rosa_roxburghii	Rroxscaffold_5G00341400
rosa_rugosa	Rorug03G0349100 Rorug05G0091600 Rorug06G0160300
rosa_samantha	Rh4AG069600 Rh4AG069800 Rh4BG067300 Rh4BG067400 Rh4CG075200 Rh4CG075300 Rh4DG064800 Rh5BG181300 Rh5DG183000
rosa_wichuraiana	Rw4G005590 Rw5G016720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	145
AccI	GTMKAC	1 cut(s)	261
AccIII	TCCGGA	1 cut(s)	436
AciI	CCGC	2 cut(s)	64, 425
AcuI	CTGAAG	1 cut(s)	16
AfaI	GTAC	3 cut(s)	221, 658, 726
AflIII	ACRYGT	2 cut(s)	297, 335
AgsI	TTSAA	7 cut(s)	48, 169, 371, 540, 574, 601, 671
AjiI	CACGTC	1 cut(s)	300
AjnI	CCWGG	1 cut(s)	327
Alw21I	GWGCWC	1 cut(s)	231
Aor13HI	TCCGGA	1 cut(s)	436
AoxI	GGCC	2 cut(s)	357, 612
ApeKI	GCWGC	1 cut(s)	739
AseI	ATTAAT	1 cut(s)	749
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	6 cut(s)	125, 131, 235, 236, 625, 715
BaeGI	GKGCMC	2 cut(s)	270, 843
BanI	GGYRCC	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	751
BccI	CCATC	4 cut(s)	110, 436, 497, 623
BceAI	ACGGC	1 cut(s)	57
BciT130I	CCWGG	1 cut(s)	329
BfaI	CTAG	1 cut(s)	110
BglII	AGATCT	1 cut(s)	732
BisI	GCNGC	1 cut(s)	740
BlsI	GCNGC	1 cut(s)	741
Bme1390I	CCNGG	1 cut(s)	329
BmgBI	CACGTC	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	2 cut(s)	147, 202
BmrFI	CCNGG	1 cut(s)	329
BmrI	ACTGGG	1 cut(s)	800
BmsI	GCATC	1 cut(s)	342
BmuI	ACTGGG	1 cut(s)	800
BpiI	GAAGAC	1 cut(s)	80
BpmI	CTGGAG	1 cut(s)	492
Bpu10I	CCTNAGC	1 cut(s)	609
BsaAI	YACGTR	1 cut(s)	265
BsaWI	WCCGGW	1 cut(s)	436
Bse1I	ACTGG	1 cut(s)	795
Bse3DI	GCAATG	3 cut(s)	216, 437, 810
BseAI	TCCGGA	1 cut(s)	436
BseBI	CCWGG	1 cut(s)	329
BseGI	GGATG	1 cut(s)	615
BseMI	GCAATG	3 cut(s)	216, 437, 810
BseNI	ACTGG	1 cut(s)	795
BseRI	GAGGAG	2 cut(s)	500, 545
BseSI	GKGCMC	2 cut(s)	270, 843
BseXI	GCAGC	1 cut(s)	751
BshFI	GGCC	2 cut(s)	359, 614
BshNI	GGYRCC	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	437
BsnI	GGCC	2 cut(s)	359, 614
Bsp1286I	GDGCHC	3 cut(s)	231, 270, 843
Bsp13I	TCCGGA	1 cut(s)	436
Bsp143I	GATC	4 cut(s)	106, 271, 732, 769
BspACI	CCGC	2 cut(s)	64, 425
BspANI	GGCC	2 cut(s)	359, 614
BspEI	TCCGGA	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	147, 202
BspT107I	GGYRCC	1 cut(s)	145
BsrDI	GCAATG	3 cut(s)	216, 437, 810
BsrI	ACTGG	1 cut(s)	795
BssMI	GATC	4 cut(s)	106, 271, 732, 769
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	2 cut(s)	224, 510
Bst6I	CTCTTC	2 cut(s)	666, 671
BstBAI	YACGTR	1 cut(s)	265
BstC8I	GCNNGC	3 cut(s)	357, 606, 817
BstDEI	CTNAG	2 cut(s)	150, 609
BstF5I	GGATG	1 cut(s)	615
BstKTI	GATC	4 cut(s)	109, 274, 735, 772
BstMBI	GATC	4 cut(s)	106, 271, 732, 769
BstMWI	GCNNNNNNNGC	1 cut(s)	816
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	2 cut(s)	136, 339
BstSCI	CCNGG	1 cut(s)	327
BstSLI	GKGCMC	2 cut(s)	270, 843
BstV1I	GCAGC	1 cut(s)	751
BstV2I	GAAGAC	1 cut(s)	80
BstX2I	RGATCY	1 cut(s)	732
BstYI	RGATCY	1 cut(s)	732
BsuRI	GGCC	2 cut(s)	359, 614
BtrI	CACGTC	1 cut(s)	300
BtsCI	GGATG	1 cut(s)	615
Cac8I	GCNNGC	3 cut(s)	357, 606, 817
Cfr13I	GGNCC	1 cut(s)	358
Csp6I	GTAC	3 cut(s)	220, 657, 725
CviAII	CATG	4 cut(s)	133, 191, 336, 481
CviJI	RGCY	9 cut(s)	44, 203, 306, 332, 359, 536, 604, 614, 742
CviKI_1	RGCY	9 cut(s)	44, 203, 306, 332, 359, 536, 604, 614, 742
CviQI	GTAC	3 cut(s)	220, 657, 725
DdeI	CTNAG	2 cut(s)	150, 609
DpnI	GATC	4 cut(s)	108, 273, 734, 771
DpnII	GATC	4 cut(s)	106, 271, 732, 769
Eam1104I	CTCTTC	2 cut(s)	666, 671
EarI	CTCTTC	2 cut(s)	666, 671
Eco57I	CTGAAG	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	327
EcoT22I	ATGCAT	1 cut(s)	138
FaeI	CATG	4 cut(s)	136, 194, 339, 484
FatI	CATG	4 cut(s)	132, 190, 335, 480
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	740
FokI	GGATG	1 cut(s)	602
Fsp4HI	GCNGC	1 cut(s)	740
FspBI	CTAG	1 cut(s)	110
GluI	GCNGC	1 cut(s)	740
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	2 cut(s)	359, 614
HapII	CCGG	1 cut(s)	437
Hin1II	CATG	4 cut(s)	136, 194, 339, 484
HinfI	GANTC	2 cut(s)	154, 187
HpaII	CCGG	1 cut(s)	437
HphI	GGTGA	6 cut(s)	125, 131, 235, 236, 625, 715
Hpy166II	GTNNAC	3 cut(s)	262, 657, 706
Hpy188I	TCNGA	1 cut(s)	200
Hpy188III	TCNNGA	2 cut(s)	184, 437
Hpy8I	GTNNAC	3 cut(s)	262, 657, 706
HpyAV	CCTTC	2 cut(s)	568, 630
HpyCH4III	ACNGT	2 cut(s)	224, 510
HpyCH4IV	ACGT	3 cut(s)	258, 264, 299
HpyCH4V	TGCA	5 cut(s)	136, 209, 355, 430, 480
HpyF10VI	GCNNNNNNNGC	1 cut(s)	816
HpyF3I	CTNAG	2 cut(s)	150, 609
HpySE526I	ACGT	3 cut(s)	258, 264, 299
Hsp92II	CATG	4 cut(s)	136, 194, 339, 484
Kpn2I	TCCGGA	1 cut(s)	436
Kzo9I	GATC	4 cut(s)	106, 271, 732, 769
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	1 cut(s)	751
LweI	GCATC	1 cut(s)	342
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	3 cut(s)	258, 264, 299
MaeIII	GTNAC	2 cut(s)	549, 794
MalI	GATC	4 cut(s)	108, 273, 734, 771
MboI	GATC	4 cut(s)	106, 271, 732, 769
MboII	GAAGA	5 cut(s)	80, 512, 589, 683, 688
MflI	RGATCY	1 cut(s)	732
MhlI	GDGCHC	3 cut(s)	231, 270, 843
MluCI	AATT	3 cut(s)	342, 523, 569
MnlI	CCTC	8 cut(s)	18, 256, 478, 523, 526, 573, 641, 836
Mph1103I	ATGCAT	1 cut(s)	138
MroI	TCCGGA	1 cut(s)	436
MseI	TTAA	6 cut(s)	255, 345, 513, 645, 749, 803
MslI	CAYNNNNRTG	1 cut(s)	131
MspI	CCGG	1 cut(s)	437
MspR9I	CCNGG	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	1 cut(s)	816
NdeII	GATC	4 cut(s)	106, 271, 732, 769
NlaIII	CATG	4 cut(s)	136, 194, 339, 484
NlaIV	GGNNCC	2 cut(s)	147, 202
NsiI	ATGCAT	1 cut(s)	138
NspI	RCATGY	2 cut(s)	136, 339
PciI	ACATGT	1 cut(s)	335
PfeI	GAWTC	2 cut(s)	154, 187
PkrI	GCNGC	1 cut(s)	741
Ppu21I	YACGTR	1 cut(s)	265
PscI	ACATGT	1 cut(s)	335
PshBI	ATTAAT	1 cut(s)	749
Psp6I	CCWGG	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	2 cut(s)	147, 202
PspPI	GGNCC	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	732
RsaI	GTAC	3 cut(s)	221, 658, 726
RsaNI	GTAC	3 cut(s)	220, 657, 725
RseI	CAYNNNNRTG	1 cut(s)	131
SaqAI	TTAA	6 cut(s)	255, 345, 513, 645, 749, 803
SatI	GCNGC	1 cut(s)	740
Sau3AI	GATC	4 cut(s)	106, 271, 732, 769
Sau96I	GGNCC	1 cut(s)	358
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	3 cut(s)	231, 270, 843
SetI	ASST	6 cut(s)	115, 248, 261, 267, 302, 565
SfaNI	GCATC	1 cut(s)	342
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	3 cut(s)	342, 523, 569
SsiI	CCGC	2 cut(s)	64, 425
SspI	AATATT	2 cut(s)	699, 777
SspMI	CTAG	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	224, 510
TaiI	ACGT	3 cut(s)	261, 267, 302
TaqII	GACCGA	1 cut(s)	81
TasI	AATT	3 cut(s)	342, 523, 569
TfiI	GAWTC	2 cut(s)	154, 187
Tru1I	TTAA	6 cut(s)	255, 345, 513, 645, 749, 803
Tru9I	TTAA	6 cut(s)	255, 345, 513, 645, 749, 803
TseI	GCWGC	1 cut(s)	739
TspDTI	ATGAA	3 cut(s)	146, 179, 582
VspI	ATTAAT	1 cut(s)	749
XceI	RCATGY	2 cut(s)	136, 339
XmiI	GTMKAC	1 cut(s)	261
XspI	CTAG	1 cut(s)	110
Zsp2I	ATGCAT	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.