AT5G04047

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000986
Physical Location & Seq
Reverse (-)
1095030 .. 1095702
673 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G04047.1

Sequence Viewer

Length: 447 bp
ATGGAGAAAATTCTTATATGTTTCCTCTTTATATTTTTTATCTCTATCCAGCAAATAGACTCTTTACTTATATTTAGGCATTTCAACATCCAAATTTCGAATCAACTTGGAGGTAACAAACAGCTTATGATCAATTGTAGATCCGGCAAACAACAAGCAACCAAAGTTGATTTTCTTCCCTTTAATACCGTATGGACACTCAAGTTCACAGTTTTCCCAAAAACTTTGATATGGTGCAACGTATGGATGGGACCTAACTATGTGCATCATGCGAAGTTTAACGCATTTATTGGGAAAGAAAGTTTTATACATGATATATGTGGAGGGAGAAAACCTAACATATGTTTCTGGCAAGCGCAAGAAGATGGAATTTATGTACGAAATAATGCAACTGGAACCTTTAAGTTAATGTATAAATGGGATTCGACCAATATCAAAAAACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

148

Amino Acids

17.36

Weight (kDa)

9.54

Isoelectric Point (pI)

35.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 30 - 140 7e-20 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 135
AcsI RAATTY 3 cut(s) 9, 93, 369
AfaI GTAC 1 cut(s) 378
AgsI TTSAA 1 cut(s) 85
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
AlwI GGATC 1 cut(s) 135
ApoI RAATTY 3 cut(s) 9, 93, 369
AspLEI GCGC 1 cut(s) 358
AspS9I GGNCC 1 cut(s) 251
AsuII TTCGAA 1 cut(s) 98
AvaII GGWCC 1 cut(s) 251
BccI CCATC 2 cut(s) 241, 359
BclI TGATCA 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 2 cut(s) 252, 397
BmsI GCATC 1 cut(s) 274
Bpu14I TTCGAA 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 397
BseGI GGATG 2 cut(s) 87, 252
BseNI ACTGG 1 cut(s) 397
BsiSI CCGG 1 cut(s) 144
BslFI GGGAC 1 cut(s) 264
BsmFI GGGAC 1 cut(s) 264
Bsp119I TTCGAA 1 cut(s) 98
Bsp143I GATC 2 cut(s) 129, 140
BspLI GGNNCC 2 cut(s) 252, 397
BspPI GGATC 1 cut(s) 135
BspT104I TTCGAA 1 cut(s) 98
BsrI ACTGG 1 cut(s) 397
BssMI GATC 2 cut(s) 129, 140
Bst4CI ACNGT 2 cut(s) 190, 211
BstBI TTCGAA 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 354
BstF5I GGATG 2 cut(s) 87, 252
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 2 cut(s) 132, 143
BstMBI GATC 2 cut(s) 129, 140
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
BtsCI GGATG 2 cut(s) 87, 252
Cac8I GCNNGC 1 cut(s) 354
CfoI GCGC 1 cut(s) 358
Cfr13I GGNCC 1 cut(s) 251
Csp6I GTAC 1 cut(s) 377
CviAII CATG 2 cut(s) 269, 311
CviJI RGCY 1 cut(s) 124
CviKI_1 RGCY 1 cut(s) 124
CviQI GTAC 1 cut(s) 377
DpnI GATC 2 cut(s) 131, 142
DpnII GATC 2 cut(s) 129, 140
Eco47I GGWCC 1 cut(s) 251
EcoO109I RGGNCCY 1 cut(s) 251
FaeI CATG 2 cut(s) 272, 314
FaqI GGGAC 1 cut(s) 264
FatI CATG 2 cut(s) 268, 310
FauNDI CATATG 1 cut(s) 341
FbaI TGATCA 1 cut(s) 129
FokI GGATG 2 cut(s) 74, 259
GlaI GCGC 1 cut(s) 357
HapII CCGG 1 cut(s) 144
HhaI GCGC 1 cut(s) 358
Hin1II CATG 2 cut(s) 272, 314
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HinfI GANTC 3 cut(s) 59, 100, 422
HpaII CCGG 1 cut(s) 144
Hpy166II GTNNAC 1 cut(s) 207
Hpy8I GTNNAC 1 cut(s) 207
HpyCH4III ACNGT 2 cut(s) 190, 211
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 3 cut(s) 237, 265, 389
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 2 cut(s) 272, 314
HspAI GCGC 1 cut(s) 356
Ksp22I TGATCA 1 cut(s) 129
Kzo9I GATC 2 cut(s) 129, 140
LpnPI CCDG 4 cut(s) 62, 157, 334, 378
LweI GCATC 1 cut(s) 274
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 113
MalI GATC 2 cut(s) 131, 142
MboI GATC 2 cut(s) 129, 140
MboII GAAGA 2 cut(s) 167, 374
MfeI CAATTG 1 cut(s) 133
MflI RGATCY 1 cut(s) 140
MluCI AATT 4 cut(s) 9, 93, 133, 369
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 3 cut(s) 35, 104, 317
MseI TTAA 5 cut(s) 183, 279, 402, 407, 445
MspI CCGG 1 cut(s) 144
MunI CAATTG 1 cut(s) 133
NdeI CATATG 1 cut(s) 341
NdeII GATC 2 cut(s) 129, 140
NlaIII CATG 2 cut(s) 272, 314
NlaIV GGNNCC 2 cut(s) 252, 397
NspV TTCGAA 1 cut(s) 98
PfeI GAWTC 2 cut(s) 100, 422
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PpuMI RGGWCCY 1 cut(s) 251
Psp5II RGGWCCY 1 cut(s) 251
PspN4I GGNNCC 2 cut(s) 252, 397
PspPI GGNCC 1 cut(s) 251
PspPPI RGGWCCY 1 cut(s) 251
PsuI RGATCY 1 cut(s) 140
RsaI GTAC 1 cut(s) 378
RsaNI GTAC 1 cut(s) 377
SaqAI TTAA 5 cut(s) 183, 279, 402, 407, 445
Sau3AI GATC 2 cut(s) 129, 140
Sau96I GGNCC 1 cut(s) 251
SchI GAGTC 1 cut(s) 53
SetI ASST 6 cut(s) 115, 126, 243, 256, 337, 401
SfaNI GCATC 1 cut(s) 274
SfuI TTCGAA 1 cut(s) 98
SinI GGWCC 1 cut(s) 251
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 4 cut(s) 9, 93, 133, 369
TaaI ACNGT 2 cut(s) 190, 211
TaiI ACGT 1 cut(s) 243
TaqI TCGA 2 cut(s) 98, 425
TasI AATT 4 cut(s) 9, 93, 133, 369
TfiI GAWTC 2 cut(s) 100, 422
Tru1I TTAA 5 cut(s) 183, 279, 402, 407, 445
Tru9I TTAA 5 cut(s) 183, 279, 402, 407, 445
VpaK11BI GGWCC 1 cut(s) 251
XapI RAATTY 3 cut(s) 9, 93, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.