Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000986

Physical Location & Seq

Genomic Coordinates Forward (+)

1219777 .. 1220612

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G04347.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAAGAATCTCTTTATCTTCGTGATTCTTCTTAGTGTATGCATCAGAAATACATTCGGAATAAGTACACTCTTGGTCAAAAATGAGCTGAACAATAAAGTCCTTGGTGTGCGTTGTAGATCTAAGGACGACAACCTTGGTGATCATATTTTGCGCGTTGGCCAAATGACCAAAAATAATTTTGATGATAATGTTTGGAGGAGGACGCTTTTCTGGTGTAATTTGTGGAAAGGACCTGATTTTAAGCTCCACGTAGCGTTTGATGCATACAGATCTCAATGGAAAGCGGATATTGGGCCTAGGTACTTGTGGATAGCAAGAGAGGATGGGATCTATTACACACAACATCCCGAGACACCTCCTAAAAAGAAATATGATTGGCCAAAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_7

Protein Analysis

130

Amino Acids

15.43

Weight (kDa)

9.57

Isoelectric Point (pI)

33.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	54 - 157	3.5e-27	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11765 AT1G28305 AT1G28306 AT2G06090 AT2G23142 AT2G23148 AT2G24870 AT2G24880 AT3G10460 AT3G26860 AT3G26860 AT3G26870 AT3G26880 AT3G27329 AT3G27331 AT3G27680 AT4G10895 AT4G29037 AT5G04047 AT5G04347 AT5G04347 AT5G04350 AT5G27238 AT5G38435 AT5G38440
fragaria_vesca	FvH4_2g19740 FvH4_3g21860 FvH4_4g05400
malus_domestica	MD05G1181700.v1.1 MD13G1110700.v1.1
prunus_persica	Prupe.1G059400_v2.0.a1 Prupe.1G059600_v2.0.a1 Prupe.1G219300_v2.0.a1 Prupe.1G219600_v2.0.a1 Prupe.1G219700_v2.0.a1 Prupe.8G208500_v2.0.a1 Prupe.8G208600_v2.0.a1 Prupe.8G208800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396541 RchiOBHm_Chr4g0396551
rosa_laevigata	RLG00000009525 RLG00000009526 RLG00000012772 RLG00000013033
rosa_multiflora	Rmu_sc0001781.1_g000005 Rmu_sc0001781.1_g000008 Rmu_sc0002909.1_g000007
rosa_roxburghii	Rroxscaffold_5G00341400
rosa_rugosa	Rorug03G0349100 Rorug05G0091600 Rorug06G0160300
rosa_samantha	Rh4AG069600 Rh4AG069800 Rh4BG067300 Rh4BG067400 Rh4CG075200 Rh4CG075300 Rh4DG064800 Rh5BG181300 Rh5DG183000
rosa_wichuraiana	Rw4G005590 Rw5G016720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	156
AciI	CCGC	1 cut(s)	287
AclWI	GGATC	1 cut(s)	338
AcoI	YGGCCR	2 cut(s)	160, 380
AfaI	GTAC	2 cut(s)	67, 305
AluBI	AGCT	2 cut(s)	88, 247
AluI	AGCT	2 cut(s)	88, 247
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	1 cut(s)	338
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	3 cut(s)	160, 296, 380
AspA2I	CCTAGG	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	2 cut(s)	233, 296
AsuHPI	GGTGA	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	233
AvrII	CCTAGG	1 cut(s)	299
BalI	TGGCCA	2 cut(s)	162, 382
BccI	CCATC	1 cut(s)	320
BclI	TGATCA	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	347
BfaI	CTAG	1 cut(s)	300
BglII	AGATCT	2 cut(s)	119, 272
BlnI	CCTAGG	1 cut(s)	299
Bme18I	GGWCC	1 cut(s)	233
BmeT110I	CYCGRG	1 cut(s)	350
BmgT120I	GGNCC	2 cut(s)	233, 296
BmsI	GCATC	2 cut(s)	51, 253
BsaAI	YACGTR	1 cut(s)	253
BsaJI	CCNNGG	3 cut(s)	103, 136, 299
BseDI	CCNNGG	3 cut(s)	103, 136, 299
BseGI	GGATG	2 cut(s)	331, 346
BseRI	GAGGAG	1 cut(s)	214
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	3 cut(s)	162, 298, 382
BsiHKCI	CYCGRG	1 cut(s)	350
BsmAI	GTCTC	1 cut(s)	347
BsnI	GGCC	3 cut(s)	162, 298, 382
BsoBI	CYCGRG	1 cut(s)	350
Bsp143I	GATC	4 cut(s)	119, 142, 272, 330
BspACI	CCGC	1 cut(s)	287
BspANI	GGCC	3 cut(s)	162, 298, 382
BspFNI	CGCG	1 cut(s)	156
BspPI	GGATC	1 cut(s)	338
BssECI	CCNNGG	3 cut(s)	103, 136, 299
BssMI	GATC	4 cut(s)	119, 142, 272, 330
BssT1I	CCWWGG	3 cut(s)	103, 136, 299
BstBAI	YACGTR	1 cut(s)	253
BstDEI	CTNAG	2 cut(s)	32, 123
BstF5I	GGATG	2 cut(s)	331, 346
BstFNI	CGCG	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	4 cut(s)	122, 145, 275, 333
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	4 cut(s)	119, 142, 272, 330
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstUI	CGCG	1 cut(s)	156
BstX2I	RGATCY	3 cut(s)	119, 272, 330
BstYI	RGATCY	3 cut(s)	119, 272, 330
BsuRI	GGCC	3 cut(s)	162, 298, 382
BtsCI	GGATG	2 cut(s)	331, 346
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	2 cut(s)	233, 296
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	66, 304
CviJI	RGCY	6 cut(s)	88, 162, 247, 298, 382, 389
CviKI_1	RGCY	6 cut(s)	88, 162, 247, 298, 382, 389
CviQI	GTAC	2 cut(s)	66, 304
DdeI	CTNAG	2 cut(s)	32, 123
DpnI	GATC	4 cut(s)	121, 144, 274, 332
DpnII	GATC	4 cut(s)	119, 142, 272, 330
EaeI	YGGCCR	2 cut(s)	160, 380
Eco130I	CCWWGG	3 cut(s)	103, 136, 299
Eco47I	GGWCC	1 cut(s)	233
Eco88I	CYCGRG	1 cut(s)	350
EcoO109I	RGGNCCY	1 cut(s)	233
EcoT14I	CCWWGG	3 cut(s)	103, 136, 299
EcoT22I	ATGCAT	2 cut(s)	44, 268
ErhI	CCWWGG	3 cut(s)	103, 136, 299
FaiI	YATR	4 cut(s)	40, 147, 268, 375
FalI	AAGNNNNNCTT	1 cut(s)	28
FbaI	TGATCA	1 cut(s)	142
FokI	GGATG	2 cut(s)	333, 338
FspBI	CTAG	1 cut(s)	300
GlaI	GCGC	1 cut(s)	155
HaeIII	GGCC	3 cut(s)	162, 298, 382
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	1 cut(s)	156
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HinfI	GANTC	2 cut(s)	7, 25
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188I	TCNGA	2 cut(s)	47, 59
Hpy188III	TCNNGA	2 cut(s)	22, 350
Hpy8I	GTNNAC	1 cut(s)	68
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	2 cut(s)	42, 266
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
HpyF3I	CTNAG	2 cut(s)	32, 123
HpySE526I	ACGT	1 cut(s)	252
HspAI	GCGC	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	4 cut(s)	119, 142, 272, 330
LmnI	GCTCC	1 cut(s)	252
LpnPI	CCDG	2 cut(s)	199, 249
LweI	GCATC	2 cut(s)	51, 253
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	1 cut(s)	252
MalI	GATC	4 cut(s)	121, 144, 274, 332
MboI	GATC	4 cut(s)	119, 142, 272, 330
MboII	GAAGA	3 cut(s)	10, 16, 20
MflI	RGATCY	3 cut(s)	119, 272, 330
MlsI	TGGCCA	2 cut(s)	162, 382
MluCI	AATT	2 cut(s)	178, 220
MluNI	TGGCCA	2 cut(s)	162, 382
MnlI	CCTC	4 cut(s)	192, 195, 316, 369
Mox20I	TGGCCA	2 cut(s)	162, 382
Mph1103I	ATGCAT	2 cut(s)	44, 268
MscI	TGGCCA	2 cut(s)	162, 382
MseI	TTAA	2 cut(s)	243, 391
Msp20I	TGGCCA	2 cut(s)	162, 382
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	263
NdeII	GATC	4 cut(s)	119, 142, 272, 330
NsiI	ATGCAT	2 cut(s)	44, 268
PfeI	GAWTC	2 cut(s)	7, 25
Ppu21I	YACGTR	1 cut(s)	253
PpuMI	RGGWCCY	1 cut(s)	233
Psp5II	RGGWCCY	1 cut(s)	233
PspPI	GGNCC	2 cut(s)	233, 296
PspPPI	RGGWCCY	1 cut(s)	233
PsuI	RGATCY	3 cut(s)	119, 272, 330
RsaI	GTAC	2 cut(s)	67, 305
RsaNI	GTAC	2 cut(s)	66, 304
SaqAI	TTAA	2 cut(s)	243, 391
Sau3AI	GATC	4 cut(s)	119, 142, 272, 330
Sau96I	GGNCC	2 cut(s)	233, 296
SetI	ASST	7 cut(s)	90, 138, 238, 249, 255, 305, 361
SfaNI	GCATC	2 cut(s)	51, 253
SinI	GGWCC	1 cut(s)	233
Sse9I	AATT	2 cut(s)	178, 220
SsiI	CCGC	1 cut(s)	287
SspMI	CTAG	1 cut(s)	300
StyI	CCWWGG	3 cut(s)	103, 136, 299
TaiI	ACGT	1 cut(s)	255
TasI	AATT	2 cut(s)	178, 220
TatI	WGTACW	1 cut(s)	65
TfiI	GAWTC	2 cut(s)	7, 25
Tru1I	TTAA	2 cut(s)	243, 391
Tru9I	TTAA	2 cut(s)	243, 391
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	233
XmaJI	CCTAGG	1 cut(s)	299
XspI	CTAG	1 cut(s)	300
Zsp2I	ATGCAT	2 cut(s)	44, 268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.