Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000986

Physical Location & Seq

Genomic Coordinates Reverse (-)

23415531 .. 23415965

Gene Structure 435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G219700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCAGAGAAAATCAATTTTCCAGTTCTATTGTTTTCTCTTCTTCCTTGGGTTAGCATCTGCTGCCCAACGAGACACTTCTGTCACACCTTTCAAGAAGTTCTTTGTACGCATTGTTAACAATCTGGACGCTAAGAAGCTGGACTTCGAATGCAAATCACAAGAAGATGTTATTGCGCGTAGCCTTGCTGCTCGTGGGGATGAGTTTGAATTTGGATTTCGTCTCGACATCCAATTAAGCACATATTATTTCTGCGATTTATGGTACTTGAATTACCATGTTGGTTTTCATGCATTTCAAGTTGATGAACAACTTTTGGACCTCTGTGGTGGAGTTCATTGCATATGGCAAGCGCAAGAGGATGGGATCTACTTGTATAACATCCAGCGGGGTAATTGGTTAAGGAAGTATTCTTGGGAGAAAATGGGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

145

Amino Acids

17.12

Weight (kDa)

6.81

Isoelectric Point (pI)

29.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11765 AT1G28305 AT1G28306 AT2G06090 AT2G23142 AT2G23148 AT2G24870 AT2G24880 AT3G10460 AT3G26860 AT3G26860 AT3G26870 AT3G26880 AT3G27329 AT3G27331 AT3G27680 AT4G10895 AT4G29037 AT5G04047 AT5G04347 AT5G04347 AT5G04350 AT5G27238 AT5G38435 AT5G38440
fragaria_vesca	FvH4_2g19740 FvH4_3g21860 FvH4_4g05400
malus_domestica	MD05G1181700.v1.1 MD13G1110700.v1.1
prunus_persica	Prupe.1G059400_v2.0.a1 Prupe.1G059600_v2.0.a1 Prupe.1G219300_v2.0.a1 Prupe.1G219600_v2.0.a1 Prupe.1G219700_v2.0.a1 Prupe.8G208500_v2.0.a1 Prupe.8G208600_v2.0.a1 Prupe.8G208800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396541 RchiOBHm_Chr4g0396551
rosa_laevigata	RLG00000009525 RLG00000009526 RLG00000012772 RLG00000013033
rosa_multiflora	Rmu_sc0001781.1_g000005 Rmu_sc0001781.1_g000008 Rmu_sc0002909.1_g000007
rosa_roxburghii	Rroxscaffold_5G00341400
rosa_rugosa	Rorug03G0349100 Rorug05G0091600 Rorug06G0160300
rosa_samantha	Rh4AG069600 Rh4AG069800 Rh4BG067300 Rh4BG067400 Rh4CG075200 Rh4CG075300 Rh4DG064800 Rh5BG181300 Rh5DG183000
rosa_wichuraiana	Rw4G005590 Rw5G016720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
AccII	CGCG	1 cut(s)	178
AciI	CCGC	1 cut(s)	388
AclWI	GGATC	1 cut(s)	374
AcsI	RAATTY	1 cut(s)	209
AfaI	GTAC	2 cut(s)	108, 266
AgsI	TTSAA	4 cut(s)	94, 209, 271, 299
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw26I	GTCTC	2 cut(s)	66, 227
AlwI	GGATC	1 cut(s)	374
ApeKI	GCWGC	2 cut(s)	62, 188
ApoI	RAATTY	1 cut(s)	209
AspLEI	GCGC	2 cut(s)	178, 355
AspS9I	GGNCC	1 cut(s)	319
AsuII	TTCGAA	1 cut(s)	147
AvaII	GGWCC	1 cut(s)	319
BauI	CACGAG	1 cut(s)	192
BbvI	GCAGC	2 cut(s)	49, 175
BccI	CCATC	1 cut(s)	356
BcoDI	GTCTC	2 cut(s)	66, 227
BisI	GCNGC	2 cut(s)	63, 189
BlsI	GCNGC	2 cut(s)	64, 190
Bme18I	GGWCC	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	319
BmsI	GCATC	1 cut(s)	65
Bpu14I	TTCGAA	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	46
Bse1I	ACTGG	1 cut(s)	22
Bse3DI	GCAATG	1 cut(s)	337
BseDI	CCNNGG	1 cut(s)	46
BseGI	GGATG	4 cut(s)	205, 228, 367, 381
BseMI	GCAATG	1 cut(s)	337
BseNI	ACTGG	1 cut(s)	22
BseXI	GCAGC	2 cut(s)	49, 175
Bsh1236I	CGCG	1 cut(s)	178
BsmAI	GTCTC	2 cut(s)	66, 227
BsmBI	CGTCTC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	155
Bsp119I	TTCGAA	1 cut(s)	147
Bsp143I	GATC	1 cut(s)	366
BspACI	CCGC	1 cut(s)	388
BspFNI	CGCG	1 cut(s)	178
BspPI	GGATC	1 cut(s)	374
BspT104I	TTCGAA	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	1 cut(s)	366
BssSI	CACGAG	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	46
Bst2BI	CACGAG	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	44
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstBI	TTCGAA	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	1 cut(s)	132
BstF5I	GGATG	4 cut(s)	205, 228, 367, 381
BstFNI	CGCG	1 cut(s)	178
BstHHI	GCGC	2 cut(s)	178, 355
BstKTI	GATC	1 cut(s)	369
BstMAI	GTCTC	2 cut(s)	66, 227
BstMBI	GATC	1 cut(s)	366
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstUI	CGCG	1 cut(s)	178
BstV1I	GCAGC	2 cut(s)	49, 175
BstX2I	RGATCY	1 cut(s)	366
BstYI	RGATCY	1 cut(s)	366
BtsCI	GGATG	4 cut(s)	205, 228, 367, 381
Cac8I	GCNNGC	1 cut(s)	351
CfoI	GCGC	2 cut(s)	178, 355
Cfr13I	GGNCC	1 cut(s)	319
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	2 cut(s)	107, 265
CviAII	CATG	2 cut(s)	278, 290
CviJI	RGCY	2 cut(s)	139, 183
CviKI_1	RGCY	2 cut(s)	139, 183
CviQI	GTAC	2 cut(s)	107, 265
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	1 cut(s)	368
DpnII	GATC	1 cut(s)	366
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	46
EcoT22I	ATGCAT	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	46
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	2 cut(s)	281, 293
FaiI	YATR	7 cut(s)	244, 262, 279, 291, 344, 346, 378
FalI	AAGNNNNNCTT	4 cut(s)	86, 118, 128, 160
FatI	CATG	2 cut(s)	277, 289
FauI	CCCGC	1 cut(s)	381
FauNDI	CATATG	1 cut(s)	344
Fnu4HI	GCNGC	2 cut(s)	63, 189
FokI	GGATG	4 cut(s)	212, 215, 368, 374
Fsp4HI	GCNGC	2 cut(s)	63, 189
GlaI	GCGC	2 cut(s)	177, 354
GluI	GCNGC	2 cut(s)	63, 189
HgaI	GACGC	1 cut(s)	137
HhaI	GCGC	2 cut(s)	178, 355
Hin1II	CATG	2 cut(s)	281, 293
Hin6I	GCGC	2 cut(s)	176, 353
HinP1I	GCGC	2 cut(s)	176, 353
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HpaI	GTTAAC	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188III	TCNNGA	3 cut(s)	94, 125, 224
Hpy8I	GTNNAC	1 cut(s)	118
HpyCH4V	TGCA	4 cut(s)	4, 153, 293, 342
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	281, 293
HspAI	GCGC	2 cut(s)	176, 353
KspAI	GTTAAC	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	366
LpnPI	CCDG	4 cut(s)	35, 110, 125, 398
Lsp1109I	GCAGC	2 cut(s)	49, 175
LweI	GCATC	1 cut(s)	65
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	368
MboI	GATC	1 cut(s)	366
MboII	GAAGA	3 cut(s)	31, 34, 176
MflI	RGATCY	1 cut(s)	366
MluCI	AATT	5 cut(s)	15, 209, 233, 271, 394
MnlI	CCTC	2 cut(s)	332, 352
Mph1103I	ATGCAT	1 cut(s)	295
MseI	TTAA	3 cut(s)	117, 236, 401
MspA1I	CMGCKG	1 cut(s)	388
Mva1269I	GAATGC	1 cut(s)	155
MvnI	CGCG	1 cut(s)	178
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeI	CATATG	1 cut(s)	344
NdeII	GATC	1 cut(s)	366
NlaIII	CATG	2 cut(s)	281, 293
NmuCI	GTSAC	1 cut(s)	82
NsiI	ATGCAT	1 cut(s)	295
NspV	TTCGAA	1 cut(s)	147
PctI	GAATGC	1 cut(s)	155
PkrI	GCNGC	2 cut(s)	64, 190
PspPI	GGNCC	1 cut(s)	319
PsuI	RGATCY	1 cut(s)	366
RsaI	GTAC	2 cut(s)	108, 266
RsaNI	GTAC	2 cut(s)	107, 265
SaqAI	TTAA	3 cut(s)	117, 236, 401
SatI	GCNGC	2 cut(s)	63, 189
Sau3AI	GATC	1 cut(s)	366
Sau96I	GGNCC	1 cut(s)	319
SetI	ASST	3 cut(s)	91, 141, 324
SfaNI	GCATC	1 cut(s)	65
SfuI	TTCGAA	1 cut(s)	147
SinI	GGWCC	1 cut(s)	319
Sse9I	AATT	5 cut(s)	15, 209, 233, 271, 394
SsiI	CCGC	1 cut(s)	388
StyI	CCWWGG	1 cut(s)	46
TaqI	TCGA	2 cut(s)	147, 225
TasI	AATT	5 cut(s)	15, 209, 233, 271, 394
Tru1I	TTAA	3 cut(s)	117, 236, 401
Tru9I	TTAA	3 cut(s)	117, 236, 401
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	62, 188
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	3 cut(s)	278, 321, 326
VpaK11BI	GGWCC	1 cut(s)	319
XapI	RAATTY	1 cut(s)	209
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.