Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000986

Physical Location & Seq

Genomic Coordinates Reverse (-)

9903288 .. 9903680

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G26870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAAATATTTCACAATTTTCTTTATTTTTTTTAGTCTTTGCATGTTTGGCCATGTATCTGGCGCCGGAATCAGAATCGTCAACGAACTCAAAAATAAGAAGACCCTTTGGATGAGGTGTTATTCCAAAAATGATGTACTTGGTCCAACAATAATACCAAATGGAGGACAATTTACAGATTATTTCTTTCATAATTTATTTGGTACAACGCGTTTTATGTGTACCTTAAAACAAGGGCCTGGATTTAGTCACAGTCAGAGCTTTAGAGCATTTAAAAATTCTGGCTTATGGGATTGGAGAGCTAGAGAAGATGGGATCTATTTAAGAAGAATCTATAAGACCAAATTTGATGATGACACAGACAATCTGCATAAAGAGCAAAGTTGGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUF

Protein Analysis

130

Amino Acids

15.39

Weight (kDa)

9.51

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	24 - 129	1.8e-19	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11765 AT1G28305 AT1G28306 AT2G06090 AT2G23142 AT2G23148 AT2G24870 AT2G24880 AT3G10460 AT3G26860 AT3G26860 AT3G26870 AT3G26880 AT3G27329 AT3G27331 AT3G27680 AT4G10895 AT4G29037 AT5G04047 AT5G04347 AT5G04347 AT5G04350 AT5G27238 AT5G38435 AT5G38440
fragaria_vesca	FvH4_2g19740 FvH4_3g21860 FvH4_4g05400
malus_domestica	MD05G1181700.v1.1 MD13G1110700.v1.1
prunus_persica	Prupe.1G059400_v2.0.a1 Prupe.1G059600_v2.0.a1 Prupe.1G219300_v2.0.a1 Prupe.1G219600_v2.0.a1 Prupe.1G219700_v2.0.a1 Prupe.8G208500_v2.0.a1 Prupe.8G208600_v2.0.a1 Prupe.8G208800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396541 RchiOBHm_Chr4g0396551
rosa_laevigata	RLG00000009525 RLG00000009526 RLG00000012772 RLG00000013033
rosa_multiflora	Rmu_sc0001781.1_g000005 Rmu_sc0001781.1_g000008 Rmu_sc0002909.1_g000007
rosa_roxburghii	Rroxscaffold_5G00341400
rosa_rugosa	Rorug03G0349100 Rorug05G0091600 Rorug06G0160300
rosa_samantha	Rh4AG069600 Rh4AG069800 Rh4BG067300 Rh4BG067400 Rh4CG075200 Rh4CG075300 Rh4DG064800 Rh5BG181300 Rh5DG183000
rosa_wichuraiana	Rw4G005590 Rw5G016720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	62
AccII	CGCG	1 cut(s)	211
AclWI	GGATC	1 cut(s)	323
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	2 cut(s)	277, 344
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	3 cut(s)	138, 205, 223
AfiI	CCNNNNNNNGG	1 cut(s)	164
AflIII	ACRYGT	1 cut(s)	209
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	2 cut(s)	261, 302
AluI	AGCT	2 cut(s)	261, 302
AlwI	GGATC	1 cut(s)	323
AoxI	GGCC	2 cut(s)	49, 236
ApoI	RAATTY	2 cut(s)	277, 344
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	2 cut(s)	143, 236
AvaII	GGWCC	1 cut(s)	143
BalI	TGGCCA	1 cut(s)	51
BanI	GGYRCC	1 cut(s)	62
BbsI	GAAGAC	1 cut(s)	107
BccI	CCATC	1 cut(s)	305
BciT130I	CCWGG	1 cut(s)	240
BfaI	CTAG	1 cut(s)	303
BfoI	RGCGCY	1 cut(s)	66
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	2 cut(s)	143, 236
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	240
BpiI	GAAGAC	1 cut(s)	107
BsaHI	GRCGYC	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
BseBI	CCWGG	1 cut(s)	240
BseGI	GGATG	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	164
Bsh1236I	CGCG	1 cut(s)	211
BshFI	GGCC	2 cut(s)	51, 238
BshNI	GGYRCC	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	164
BsnI	GGCC	2 cut(s)	51, 238
Bsp143I	GATC	1 cut(s)	315
BspANI	GGCC	2 cut(s)	51, 238
BspFNI	CGCG	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	64
BspPI	GGATC	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	62
BssMI	GATC	1 cut(s)	315
BssNI	GRCGYC	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	254
BstACI	GRCGYC	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	117
BstFNI	CGCG	1 cut(s)	211
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	1 cut(s)	318
BstMBI	GATC	1 cut(s)	315
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 376
BstNI	CCWGG	1 cut(s)	240
BstNSI	RCATGY	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	238
BstUI	CGCG	1 cut(s)	211
BstV2I	GAAGAC	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	315
BstXI	CCANNNNNNTGG	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	315
BsuRI	GGCC	2 cut(s)	51, 238
BtsCI	GGATG	1 cut(s)	117
CfoI	GCGC	1 cut(s)	65
Cfr13I	GGNCC	2 cut(s)	143, 236
Csp6I	GTAC	3 cut(s)	137, 204, 222
CviAII	CATG	2 cut(s)	43, 53
CviJI	RGCY	5 cut(s)	51, 238, 261, 285, 302
CviKI_1	RGCY	5 cut(s)	51, 238, 261, 285, 302
CviQI	GTAC	3 cut(s)	137, 204, 222
DinI	GGCGCC	1 cut(s)	64
DpnI	GATC	1 cut(s)	317
DpnII	GATC	1 cut(s)	315
DraI	TTTAAA	1 cut(s)	274
EaeI	YGGCCR	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	238
EgeI	GGCGCC	1 cut(s)	64
EheI	GGCGCC	1 cut(s)	64
FaeI	CATG	2 cut(s)	46, 56
FaiI	YATR	8 cut(s)	44, 54, 192, 218, 289, 336, 372, 391
FatI	CATG	2 cut(s)	42, 52
FokI	GGATG	1 cut(s)	124
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	1 cut(s)	64
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	51, 238
HapII	CCGG	1 cut(s)	66
HhaI	GCGC	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	2 cut(s)	46, 56
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	3 cut(s)	69, 75, 330
HpaII	CCGG	1 cut(s)	66
Hpy166II	GTNNAC	2 cut(s)	82, 222
Hpy188I	TCNGA	2 cut(s)	74, 258
Hpy8I	GTNNAC	2 cut(s)	82, 222
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4V	TGCA	2 cut(s)	42, 370
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 376
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	46, 56
HspAI	GCGC	1 cut(s)	63
KasI	GGCGCC	1 cut(s)	62
Kzo9I	GATC	1 cut(s)	315
LpnPI	CCDG	5 cut(s)	45, 79, 225, 252, 267
MaeI	CTAG	1 cut(s)	303
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	1 cut(s)	317
MboI	GATC	1 cut(s)	315
MboII	GAAGA	3 cut(s)	112, 320, 339
MflI	RGATCY	1 cut(s)	315
MlsI	TGGCCA	1 cut(s)	51
MluCI	AATT	5 cut(s)	15, 170, 193, 277, 344
MluI	ACGCGT	1 cut(s)	209
MluNI	TGGCCA	1 cut(s)	51
Mly113I	GGCGCC	1 cut(s)	63
MmeI	TCCRAC	2 cut(s)	170, 365
MnlI	CCTC	2 cut(s)	108, 158
Mox20I	TGGCCA	1 cut(s)	51
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	51
MseI	TTAA	3 cut(s)	227, 273, 323
Msp20I	TGGCCA	1 cut(s)	51
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	240
MvnI	CGCG	1 cut(s)	211
MwoI	GCNNNNNNNGC	2 cut(s)	48, 376
NarI	GGCGCC	1 cut(s)	63
NdeII	GATC	1 cut(s)	315
NlaIII	CATG	2 cut(s)	46, 56
NlaIV	GGNNCC	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	248
NspI	RCATGY	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	3 cut(s)	69, 75, 330
PluTI	GGCGCC	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	64
PspPI	GGNCC	2 cut(s)	143, 236
PsuI	RGATCY	1 cut(s)	315
RsaI	GTAC	3 cut(s)	138, 205, 223
RsaNI	GTAC	3 cut(s)	137, 204, 222
SaqAI	TTAA	3 cut(s)	227, 273, 323
Sau3AI	GATC	1 cut(s)	315
Sau96I	GGNCC	2 cut(s)	143, 236
ScrFI	CCNGG	1 cut(s)	240
SetI	ASST	4 cut(s)	119, 227, 263, 304
SfoI	GGCGCC	1 cut(s)	64
SinI	GGWCC	1 cut(s)	143
Sse9I	AATT	5 cut(s)	15, 170, 193, 277, 344
SspDI	GGCGCC	1 cut(s)	62
SspI	AATATT	1 cut(s)	8
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	1 cut(s)	238
TaaI	ACNGT	1 cut(s)	254
TasI	AATT	5 cut(s)	15, 170, 193, 277, 344
TatI	WGTACW	1 cut(s)	136
TfiI	GAWTC	3 cut(s)	69, 75, 330
Tru1I	TTAA	3 cut(s)	227, 273, 323
Tru9I	TTAA	3 cut(s)	227, 273, 323
TseFI	GTSAC	1 cut(s)	248
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	2 cut(s)	17, 179
VpaK11BI	GGWCC	1 cut(s)	143
XapI	RAATTY	2 cut(s)	277, 344
XceI	RCATGY	1 cut(s)	46
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.