Prupe.1G059600_v2.0.a1

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000986
Physical Location & Seq
Forward (+)
4208348 .. 4208782
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G059600.1

Sequence Viewer

Length: 435 bp
ATGAAAGGAAAAACTTTACGGGTGTTGTACTATTTTCTGCTCTTGGCTTCATTAGCCTTCAAGCCAAGTTCCTGCTCCAGTACTACGTCAATTGGGAAAAAGTACTTTGTGCGTATCGTCAACGATCTGGACAACAAACCACTTGACTTCAGTTGTAAATCTGGTGATGATCAAATCAATCGCAGTCTTCCAACTGCCGGATCACAGTTTGAATTTGGATTTCGACTGGGGTTTACGACTCAGTTCAATTGTGACCTGCGGTACTCAACTTACCATGCTATGATTATTGCGTTTAGAGATGAGGAGGCTCTTCTTAATGATTGTGGTGGAGTACATTGCATATGGAGTGCGAGACAGGATGGAATATACTTATATAGGATCAAGCATGATGATTATAAAAAGTGGTATGACTGGGAAAACCAAATTCGAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

145

Amino Acids

16.77

Weight (kDa)

8.57

Isoelectric Point (pI)

28.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 396
Acc36I ACCTGC 1 cut(s) 264
AciI CCGC 1 cut(s) 259
AclWI GGATC 2 cut(s) 208, 386
AcsI RAATTY 2 cut(s) 212, 423
AcuI CTGAAG 1 cut(s) 133
AfaI GTAC 5 cut(s) 29, 82, 104, 263, 333
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 3 cut(s) 61, 212, 247
Alw26I GTCTC 1 cut(s) 346
AlwI GGATC 2 cut(s) 208, 386
ApoI RAATTY 2 cut(s) 212, 423
AsuHPI GGTGA 1 cut(s) 176
AsuII TTCGAA 1 cut(s) 427
BbsI GAAGAC 1 cut(s) 179
BccI CCATC 1 cut(s) 353
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 1 cut(s) 346
BfuAI ACCTGC 1 cut(s) 264
BmcAI AGTACT 2 cut(s) 82, 104
BmrI ACTGGG 2 cut(s) 236, 421
BmuI ACTGGG 2 cut(s) 236, 421
BpiI GAAGAC 1 cut(s) 179
BpmI CTGGAG 1 cut(s) 61
Bpu14I TTCGAA 1 cut(s) 427
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 3 cut(s) 78, 231, 416
Bse3DI GCAATG 1 cut(s) 334
BseGI GGATG 1 cut(s) 364
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMI GCAATG 1 cut(s) 334
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 3 cut(s) 78, 231, 416
BseRI GAGGAG 1 cut(s) 317
BsiSI CCGG 1 cut(s) 198
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 346
Bsp119I TTCGAA 1 cut(s) 427
Bsp143I GATC 4 cut(s) 124, 169, 200, 378
BspACI CCGC 1 cut(s) 259
BspCNI CTCAG 1 cut(s) 253
BspMI ACCTGC 1 cut(s) 264
BspPI GGATC 2 cut(s) 208, 386
BspQI GCTCTTC 1 cut(s) 315
BspT104I TTCGAA 1 cut(s) 427
BsrDI GCAATG 1 cut(s) 334
BsrI ACTGG 3 cut(s) 78, 231, 416
BssMI GATC 4 cut(s) 124, 169, 200, 378
Bst4CI ACNGT 1 cut(s) 207
Bst6I CTCTTC 1 cut(s) 315
BstBI TTCGAA 1 cut(s) 427
BstDEI CTNAG 1 cut(s) 240
BstF5I GGATG 1 cut(s) 364
BstKTI GATC 4 cut(s) 127, 172, 203, 381
BstMAI GTCTC 1 cut(s) 346
BstMBI GATC 4 cut(s) 124, 169, 200, 378
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstV2I GAAGAC 1 cut(s) 179
BtsCI GGATG 1 cut(s) 364
BveI ACCTGC 1 cut(s) 264
Csp6I GTAC 5 cut(s) 28, 81, 103, 262, 332
CviAII CATG 3 cut(s) 275, 386, 432
CviJI RGCY 4 cut(s) 47, 56, 64, 308
CviKI_1 RGCY 4 cut(s) 47, 56, 64, 308
CviQI GTAC 5 cut(s) 28, 81, 103, 262, 332
DdeI CTNAG 1 cut(s) 240
DpnI GATC 4 cut(s) 126, 171, 202, 380
DpnII GATC 4 cut(s) 124, 169, 200, 378
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
Eco57I CTGAAG 1 cut(s) 133
FaeI CATG 3 cut(s) 278, 389, 435
FatI CATG 3 cut(s) 274, 385, 431
FauNDI CATATG 1 cut(s) 341
FbaI TGATCA 1 cut(s) 169
FokI GGATG 1 cut(s) 371
GsuI CTGGAG 1 cut(s) 61
HapII CCGG 1 cut(s) 198
Hin1II CATG 3 cut(s) 278, 389, 435
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 1 cut(s) 238
HpaII CCGG 1 cut(s) 198
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 2 cut(s) 121, 234
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 2 cut(s) 121, 234
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4IV ACGT 1 cut(s) 86
HpyCH4V TGCA 1 cut(s) 339
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 1 cut(s) 86
Hsp92II CATG 3 cut(s) 278, 389, 435
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 4 cut(s) 124, 169, 200, 378
LguI GCTCTTC 1 cut(s) 315
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 9 cut(s) 85, 91, 113, 147, 211, 212, 269, 341, 397
MaeII ACGT 1 cut(s) 86
MaeIII GTNAC 1 cut(s) 251
MalI GATC 4 cut(s) 126, 171, 202, 380
MboI GATC 4 cut(s) 124, 169, 200, 378
MboII GAAGA 2 cut(s) 179, 302
MfeI CAATTG 2 cut(s) 90, 247
MluCI AATT 4 cut(s) 90, 212, 247, 423
MlyI GAGTC 1 cut(s) 232
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 2 cut(s) 295, 298
MseI TTAA 1 cut(s) 315
MspI CCGG 1 cut(s) 198
MunI CAATTG 2 cut(s) 90, 247
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeI CATATG 1 cut(s) 341
NdeII GATC 4 cut(s) 124, 169, 200, 378
NlaIII CATG 3 cut(s) 278, 389, 435
NmuCI GTSAC 1 cut(s) 251
NspV TTCGAA 1 cut(s) 427
PciSI GCTCTTC 1 cut(s) 315
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
PsiI TTATAA 1 cut(s) 396
RsaI GTAC 5 cut(s) 29, 82, 104, 263, 333
RsaNI GTAC 5 cut(s) 28, 81, 103, 262, 332
SapI GCTCTTC 1 cut(s) 315
SaqAI TTAA 1 cut(s) 315
Sau3AI GATC 4 cut(s) 124, 169, 200, 378
ScaI AGTACT 2 cut(s) 82, 104
SchI GAGTC 1 cut(s) 232
SetI ASST 2 cut(s) 89, 258
SfuI TTCGAA 1 cut(s) 427
Sse9I AATT 4 cut(s) 90, 212, 247, 423
SsiI CCGC 1 cut(s) 259
TaaI ACNGT 1 cut(s) 207
TaiI ACGT 1 cut(s) 89
TaqI TCGA 2 cut(s) 223, 427
TasI AATT 4 cut(s) 90, 212, 247, 423
TatI WGTACW 4 cut(s) 27, 80, 102, 331
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TseFI GTSAC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 2 cut(s) 17, 39
XapI RAATTY 2 cut(s) 212, 423
ZrmI AGTACT 2 cut(s) 82, 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.