RLG00000012772

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000986
Physical Location & Seq
Reverse (-)
22218308 .. 22220071
1764 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012772

Sequence Viewer

Length: 447 bp
ATGAAGTGGATGAGATTATGCCCACCAAATACTCGTGTGCTTTTACTTGTCTTGCTTATCAGCTTGAGACAACCACTGGTCACTAATTCAATGTTCGAAAAGATCCATGTGCATATCCTCAATGATTTTCAAACTGAGACTCTTCAAGCTCGATGTCAATCCAAGGACGACGATTTAGGGGTGCAACAGATTCCGTGGAGCGGCGGACAGAAAACTTTTGATGCTTTTATTGAGAACGAATGGTTTATAAAGAGTTGCGTTAAACATTGCATATGGAAATTGGACGAAATCGGAACTTCATTGTACAGTTTCAAGTACAAGCTAGACATACCCATGTTCTATGAGGTGCTCTCCGTCCTCCTAAGTTGGTGTTACCTGTCTTTATCAGACTTGTTAGGAGGCTGGTGTCAAATTCTTAAAGGGGATATGCGTGTCATGGAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

149

Amino Acids

17.3

Weight (kDa)

6.27

Isoelectric Point (pI)

32.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 248
AccBSI CCGCTC 1 cut(s) 201
AciI CCGC 2 cut(s) 201, 204
AclWI GGATC 1 cut(s) 97
AcsI RAATTY 1 cut(s) 411
AfaI GTAC 2 cut(s) 305, 317
AfiI CCNNNNNNNGG 1 cut(s) 200
AgsI TTSAA 4 cut(s) 90, 131, 146, 313
AluBI AGCT 3 cut(s) 63, 149, 322
AluI AGCT 3 cut(s) 63, 149, 322
Alw21I GWGCWC 1 cut(s) 351
Alw26I GTCTC 2 cut(s) 61, 131
AlwI GGATC 1 cut(s) 97
ApoI RAATTY 1 cut(s) 411
AsuII TTCGAA 1 cut(s) 96
BauI CACGAG 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 351
BcoDI GTCTC 2 cut(s) 61, 131
BfaI CTAG 1 cut(s) 323
BisI GCNGC 1 cut(s) 202
BlsI GCNGC 1 cut(s) 203
BmsI GCATC 1 cut(s) 211
BplI GAGNNNNNCTC 2 cut(s) 335, 367
Bpu14I TTCGAA 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 85
BsaBI GATNNNNATC 1 cut(s) 157
BsaJI CCNNGG 2 cut(s) 162, 194
Bsc4I CCNNNNNNNGG 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 265
Bse8I GATNNNNATC 1 cut(s) 157
BseDI CCNNGG 2 cut(s) 162, 194
BseGI GGATG 1 cut(s) 15
BseJI GATNNNNATC 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMI GCAATG 1 cut(s) 265
BseMII CTCAG 1 cut(s) 126
BseNI ACTGG 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 351
BslI CCNNNNNNNGG 1 cut(s) 200
BsmAI GTCTC 2 cut(s) 61, 131
Bsp119I TTCGAA 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 351
Bsp1407I TGTACA 1 cut(s) 303
Bsp143I GATC 1 cut(s) 102
BspACI CCGC 2 cut(s) 201, 204
BspCNI CTCAG 1 cut(s) 127
BspPI GGATC 1 cut(s) 97
BspT104I TTCGAA 1 cut(s) 96
BsrBI CCGCTC 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 265
BsrGI TGTACA 1 cut(s) 303
BsrI ACTGG 1 cut(s) 81
BssECI CCNNGG 2 cut(s) 162, 194
BssMI GATC 1 cut(s) 102
BssSI CACGAG 1 cut(s) 33
BssT1I CCWWGG 1 cut(s) 162
Bst2BI CACGAG 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 308
Bst6I CTCTTC 1 cut(s) 147
BstAUI TGTACA 1 cut(s) 303
BstBI TTCGAA 1 cut(s) 96
BstDEI CTNAG 2 cut(s) 135, 362
BstDSI CCRYGG 1 cut(s) 194
BstF5I GGATG 1 cut(s) 15
BstKTI GATC 1 cut(s) 105
BstMAI GTCTC 2 cut(s) 61, 131
BstMBI GATC 1 cut(s) 102
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
BtgI CCRYGG 1 cut(s) 194
BtsCI GGATG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 74
Csp6I GTAC 2 cut(s) 304, 316
CviAII CATG 3 cut(s) 107, 334, 436
CviJI RGCY 4 cut(s) 63, 149, 322, 402
CviKI_1 RGCY 4 cut(s) 63, 149, 322, 402
CviQI GTAC 2 cut(s) 304, 316
DdeI CTNAG 2 cut(s) 135, 362
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
EciI GGCGGA 1 cut(s) 219
Eco130I CCWWGG 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 3 cut(s) 110, 337, 439
FatI CATG 3 cut(s) 106, 333, 435
FauNDI CATATG 1 cut(s) 272
Fnu4HI GCNGC 1 cut(s) 202
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 1 cut(s) 202
FspBI CTAG 1 cut(s) 323
GluI GCNGC 1 cut(s) 202
Hin1II CATG 3 cut(s) 110, 337, 439
HinfI GANTC 2 cut(s) 139, 190
Hpy188I TCNGA 2 cut(s) 293, 388
Hpy99I CGWCG 1 cut(s) 173
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4V TGCA 3 cut(s) 112, 184, 270
HpyF3I CTNAG 2 cut(s) 135, 362
Hsp92II CATG 3 cut(s) 110, 337, 439
Kzo9I GATC 1 cut(s) 102
LmnI GCTCC 1 cut(s) 198
LpnPI CCDG 3 cut(s) 62, 388, 389
LweI GCATC 1 cut(s) 211
MaeI CTAG 1 cut(s) 323
MaeIII GTNAC 2 cut(s) 79, 371
MalI GATC 1 cut(s) 104
MbiI CCGCTC 1 cut(s) 201
MboI GATC 1 cut(s) 102
MboII GAAGA 1 cut(s) 134
MflI RGATCY 1 cut(s) 102
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 3 cut(s) 85, 278, 411
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 4 cut(s) 128, 337, 368, 392
MseI TTAA 2 cut(s) 261, 417
MslI CAYNNNNRTG 1 cut(s) 332
NdeI CATATG 1 cut(s) 272
NdeII GATC 1 cut(s) 102
NlaIII CATG 3 cut(s) 110, 337, 439
NmuCI GTSAC 1 cut(s) 79
NspV TTCGAA 1 cut(s) 96
PfeI GAWTC 1 cut(s) 190
PkrI GCNGC 1 cut(s) 203
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PsiI TTATAA 1 cut(s) 248
PsuI RGATCY 1 cut(s) 102
RsaI GTAC 2 cut(s) 305, 317
RsaNI GTAC 2 cut(s) 304, 316
RseI CAYNNNNRTG 1 cut(s) 332
SaqAI TTAA 2 cut(s) 261, 417
SatI GCNGC 1 cut(s) 202
Sau3AI GATC 1 cut(s) 102
SchI GAGTC 1 cut(s) 133
SduI GDGCHC 1 cut(s) 351
SetI ASST 5 cut(s) 65, 151, 324, 348, 378
SfaNI GCATC 1 cut(s) 211
SfuI TTCGAA 1 cut(s) 96
SmiMI CAYNNNNRTG 1 cut(s) 332
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
Sse9I AATT 3 cut(s) 85, 278, 411
SsiI CCGC 2 cut(s) 201, 204
SspMI CTAG 1 cut(s) 323
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 308
TaqI TCGA 2 cut(s) 96, 151
TasI AATT 3 cut(s) 85, 278, 411
TatI WGTACW 2 cut(s) 303, 315
TauI GCSGC 1 cut(s) 204
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 2 cut(s) 261, 417
Tru9I TTAA 2 cut(s) 261, 417
TscAI CASTG 1 cut(s) 81
TseFI GTSAC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 17, 288
TspGWI ACGGA 2 cut(s) 183, 343
TspRI CASTG 1 cut(s) 81
XapI RAATTY 1 cut(s) 411
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.