AT5G27238

Serine incorporator (Serinc)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000986
Physical Location & Seq
Reverse (-)
9593904 .. 9594434
531 bp
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UTR
Exon/CDS
Intron
AT5G27238.1

Sequence Viewer

Length: 408 bp
ATGAATAATCTGTTCGTTTTGGTCATTATTATTGTTTTGAGTGCGGGATCGAACAATGGTAGCAAACTCTTTCCAAAAAACCAATTATACTTTAGAAACTCTTTTAACAGGAATTATGATATTCTTACGGTTCATTGCAAGTCAGATAAAGATGATCTCGGTATTCACACAGTGGCTCGTTCATACGTATATTTTTTTAAGTTTGGGGATAGCATTTTTGGTGATACTGAGATTGTATGTACACTAAATCATGGGGTTAGTGCTACCAAATATAAAGTAACATTTACTGCATATAAAGAGAGTCGTTTTGTTATAAGATTTGGCGCCATAAAAATCTGGGAGGCTAGAGATGATGGGATATATCTCACAGATGAAGATCACGATGCAGTAAAAATGTATGGTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dirigent Serinc

Protein Analysis

135

Amino Acids

15.54

Weight (kDa)

7.77

Isoelectric Point (pI)

23.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 29 - 135 5e-25 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 314
AccB1I GGYRCC 1 cut(s) 323
AciI CCGC 1 cut(s) 44
AclWI GGATC 1 cut(s) 55
AcyI GRCGYC 1 cut(s) 324
AdeI CACNNNGTG 1 cut(s) 172
AfaI GTAC 1 cut(s) 241
AlwI GGATC 1 cut(s) 55
AspLEI GCGC 1 cut(s) 326
AsuHPI GGTGA 1 cut(s) 233
BanI GGYRCC 1 cut(s) 323
BccI CCATC 1 cut(s) 347
BfaI CTAG 1 cut(s) 345
BfoI RGCGCY 1 cut(s) 327
BmiI GGNNCC 1 cut(s) 325
BmsI GCATC 1 cut(s) 373
BsaAI YACGTR 1 cut(s) 187
BsaBI GATNNNNATC 1 cut(s) 375
BsaHI GRCGYC 1 cut(s) 324
Bse3DI GCAATG 1 cut(s) 133
Bse8I GATNNNNATC 1 cut(s) 375
BseJI GATNNNNATC 1 cut(s) 375
BseMI GCAATG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 219
BshNI GGYRCC 1 cut(s) 323
Bsp1407I TGTACA 1 cut(s) 239
Bsp143I GATC 3 cut(s) 47, 154, 376
BspACI CCGC 1 cut(s) 44
BspCNI CTCAG 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 325
BspPI GGATC 1 cut(s) 55
BspT107I GGYRCC 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 133
BsrGI TGTACA 1 cut(s) 239
BssMI GATC 3 cut(s) 47, 154, 376
BssNI GRCGYC 1 cut(s) 324
Bst4CI ACNGT 2 cut(s) 130, 172
BstACI GRCGYC 1 cut(s) 324
BstAUI TGTACA 1 cut(s) 239
BstBAI YACGTR 1 cut(s) 187
BstDEI CTNAG 1 cut(s) 228
BstH2I RGCGCY 1 cut(s) 327
BstHHI GCGC 1 cut(s) 326
BstKTI GATC 3 cut(s) 50, 157, 379
BstMBI GATC 3 cut(s) 47, 154, 376
BstSNI TACGTA 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 177
CfoI GCGC 1 cut(s) 326
Csp6I GTAC 1 cut(s) 240
CviAII CATG 1 cut(s) 251
CviJI RGCY 2 cut(s) 176, 344
CviKI_1 RGCY 2 cut(s) 176, 344
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 1 cut(s) 228
DinI GGCGCC 1 cut(s) 325
DpnI GATC 3 cut(s) 49, 156, 378
DpnII GATC 3 cut(s) 47, 154, 376
DraIII CACNNNGTG 1 cut(s) 172
Eco105I TACGTA 1 cut(s) 187
EgeI GGCGCC 1 cut(s) 325
EheI GGCGCC 1 cut(s) 325
FaeI CATG 1 cut(s) 254
FatI CATG 1 cut(s) 250
FauI CCCGC 1 cut(s) 37
FspBI CTAG 1 cut(s) 345
GlaI GCGC 1 cut(s) 325
HaeII RGCGCY 1 cut(s) 327
HhaI GCGC 1 cut(s) 326
Hin1I GRCGYC 1 cut(s) 324
Hin1II CATG 1 cut(s) 254
Hin6I GCGC 1 cut(s) 324
HinP1I GCGC 1 cut(s) 324
HinfI GANTC 1 cut(s) 301
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 242
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 1 cut(s) 380
Hpy8I GTNNAC 1 cut(s) 242
HpyCH4III ACNGT 2 cut(s) 130, 172
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 3 cut(s) 138, 290, 386
HpyF3I CTNAG 1 cut(s) 228
HpySE526I ACGT 1 cut(s) 186
Hsp92I GRCGYC 1 cut(s) 324
Hsp92II CATG 1 cut(s) 254
HspAI GCGC 1 cut(s) 324
KasI GGCGCC 1 cut(s) 323
Kzo9I GATC 3 cut(s) 47, 154, 376
LpnPI CCDG 2 cut(s) 94, 322
LweI GCATC 1 cut(s) 373
MaeI CTAG 1 cut(s) 345
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 277
MalI GATC 3 cut(s) 49, 156, 378
MboI GATC 3 cut(s) 47, 154, 376
MboII GAAGA 1 cut(s) 386
MluCI AATT 2 cut(s) 83, 112
Mly113I GGCGCC 1 cut(s) 324
MlyI GAGTC 1 cut(s) 310
MnlI CCTC 1 cut(s) 334
MseI TTAA 2 cut(s) 105, 198
NarI GGCGCC 1 cut(s) 324
NdeII GATC 3 cut(s) 47, 154, 376
NlaIII CATG 1 cut(s) 254
NlaIV GGNNCC 1 cut(s) 325
PleI GAGTC 1 cut(s) 309
PluTI GGCGCC 1 cut(s) 327
PpsI GAGTC 1 cut(s) 309
Ppu21I YACGTR 1 cut(s) 187
PsiI TTATAA 1 cut(s) 314
PspN4I GGNNCC 1 cut(s) 325
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SaqAI TTAA 2 cut(s) 105, 198
Sau3AI GATC 3 cut(s) 47, 154, 376
SchI GAGTC 1 cut(s) 310
SetI ASST 1 cut(s) 189
SfaNI GCATC 1 cut(s) 373
SfoI GGCGCC 1 cut(s) 325
SgeI CNNG 9 cut(s) 57, 121, 151, 170, 189, 263, 349, 357, 392
SnaBI TACGTA 1 cut(s) 187
Sse9I AATT 2 cut(s) 83, 112
SsiI CCGC 1 cut(s) 44
SspDI GGCGCC 1 cut(s) 323
SspMI CTAG 1 cut(s) 345
TaaI ACNGT 2 cut(s) 130, 172
TaiI ACGT 1 cut(s) 189
TaqI TCGA 1 cut(s) 50
TasI AATT 2 cut(s) 83, 112
TatI WGTACW 1 cut(s) 239
Tru1I TTAA 2 cut(s) 105, 198
Tru9I TTAA 2 cut(s) 105, 198
TscAI CASTG 1 cut(s) 177
TspDTI ATGAA 4 cut(s) 17, 122, 171, 387
TspRI CASTG 1 cut(s) 177
XspI CTAG 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.