Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000986

Physical Location & Seq

Genomic Coordinates Forward (+)

16680724 .. 16681363

Gene Structure 640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g19740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAAGCCGACTACGAACATTTCTGCACTCCTGCTCGTCTTGCTCATCTGCCTGAGCCAGCCATGGGTCACCCATTCCCTGTTTGGGAAGTACACGGTGCACATCATAAATCAGATGGGAAACAATCAGATTCTTCATTCTCATTGCTGGTCCAAGAACGACGATCTAGGGACTCATGATCTTGCAGTGAATGCGGAGGTCAATTGGAGTTTCCGGGAAGCCCTTTTCGGAACTAAATTCAAGTGCAATATGTGGTGGAGCGGTGGACACCAAGAGTTTTACGTTTTCAATTCTAAAGATGATACGATCACAAATTGCTGCGGTACCGGGGCTGGTGGAGACTGCTTTTGGAGAATCAAGGAAGATGGTATTTACTTGTATAATGGTGCAAAGCATAAGTTAGTCCAGAAGCAAAAATGGATAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

143

Amino Acids

16.27

Weight (kDa)

8.53

Isoelectric Point (pI)

16.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	32 - 140	1.6e-28	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11765 AT1G28305 AT1G28306 AT2G06090 AT2G23142 AT2G23148 AT2G24870 AT2G24880 AT3G10460 AT3G26860 AT3G26860 AT3G26870 AT3G26880 AT3G27329 AT3G27331 AT3G27680 AT4G10895 AT4G29037 AT5G04047 AT5G04347 AT5G04347 AT5G04350 AT5G27238 AT5G38435 AT5G38440
fragaria_vesca	FvH4_2g19740 FvH4_3g21860 FvH4_4g05400
malus_domestica	MD05G1181700.v1.1 MD13G1110700.v1.1
prunus_persica	Prupe.1G059400_v2.0.a1 Prupe.1G059600_v2.0.a1 Prupe.1G219300_v2.0.a1 Prupe.1G219600_v2.0.a1 Prupe.1G219700_v2.0.a1 Prupe.8G208500_v2.0.a1 Prupe.8G208600_v2.0.a1 Prupe.8G208800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396541 RchiOBHm_Chr4g0396551
rosa_laevigata	RLG00000009525 RLG00000009526 RLG00000012772 RLG00000013033
rosa_multiflora	Rmu_sc0001781.1_g000005 Rmu_sc0001781.1_g000008 Rmu_sc0002909.1_g000007
rosa_roxburghii	Rroxscaffold_5G00341400
rosa_rugosa	Rorug03G0349100 Rorug05G0091600 Rorug06G0160300
rosa_samantha	Rh4AG069600 Rh4AG069800 Rh4BG067300 Rh4BG067400 Rh4CG075200 Rh4CG075300 Rh4DG064800 Rh5BG181300 Rh5DG183000
rosa_wichuraiana	Rw4G005590 Rw5G016720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	323
AccB1I	GGYRCC	1 cut(s)	323
AccBSI	CCGCTC	1 cut(s)	261
AciI	CCGC	3 cut(s)	194, 261, 321
AcsI	RAATTY	1 cut(s)	236
AfaI	GTAC	2 cut(s)	92, 325
AfiI	CCNNNNNNNGG	2 cut(s)	64, 84
AgsI	TTSAA	2 cut(s)	241, 289
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	1 cut(s)	333
Alw44I	GTGCAC	1 cut(s)	98
ApaLI	GTGCAC	1 cut(s)	98
ApeKI	GCWGC	1 cut(s)	318
ApoI	RAATTY	1 cut(s)	236
Asp718I	GGTACC	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	150
AsuC2I	CCSGG	2 cut(s)	215, 328
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	150
BaeGI	GKGCMC	1 cut(s)	102
BanI	GGYRCC	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	2 cut(s)	109, 359
BcnI	CCSGG	2 cut(s)	215, 328
BcoDI	GTCTC	1 cut(s)	333
BfaI	CTAG	1 cut(s)	167
BisI	GCNGC	1 cut(s)	319
BlsI	GCNGC	1 cut(s)	320
Bme1390I	CCNGG	2 cut(s)	215, 328
Bme18I	GGWCC	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	1 cut(s)	325
BmrFI	CCNGG	2 cut(s)	215, 328
Bpu10I	CCTNAGC	1 cut(s)	53
BpuMI	CCSGG	2 cut(s)	215, 328
BsaJI	CCNNGG	2 cut(s)	62, 327
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 84
Bse3DI	GCAATG	1 cut(s)	142
BseDI	CCNNGG	2 cut(s)	62, 327
BseLI	CCNNNNNNNGG	2 cut(s)	64, 84
BseMI	GCAATG	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	305
BsgI	GTGCAG	1 cut(s)	9
BshNI	GGYRCC	1 cut(s)	323
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	2 cut(s)	214, 327
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	2 cut(s)	64, 84
BsmAI	GTCTC	1 cut(s)	333
BsmFI	GGGAC	1 cut(s)	184
BsmI	GAATGC	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	3 cut(s)	163, 178, 306
Bsp19I	CCATGG	1 cut(s)	62
BspACI	CCGC	3 cut(s)	194, 261, 321
BspCNI	CTCAG	1 cut(s)	45
BspHI	TCATGA	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	325
BspT107I	GGYRCC	1 cut(s)	323
BsrBI	CCGCTC	1 cut(s)	261
BsrDI	GCAATG	1 cut(s)	142
BssECI	CCNNGG	2 cut(s)	62, 327
BssMI	GATC	3 cut(s)	163, 178, 306
BssT1I	CCWWGG	1 cut(s)	62
Bst4CI	ACNGT	1 cut(s)	97
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	53
BstDSI	CCRYGG	1 cut(s)	62
BstEII	GGTNACC	1 cut(s)	67
BstKTI	GATC	3 cut(s)	166, 181, 309
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	3 cut(s)	163, 178, 306
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 191
BstPI	GGTNACC	1 cut(s)	67
BstSCI	CCNGG	2 cut(s)	213, 326
BstSLI	GKGCMC	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	305
BtgI	CCRYGG	1 cut(s)	62
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	59
CciI	TCATGA	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	150
Csp6I	GTAC	2 cut(s)	91, 324
CviAII	CATG	2 cut(s)	63, 176
CviJI	RGCY	5 cut(s)	7, 57, 61, 221, 332
CviKI_1	RGCY	5 cut(s)	7, 57, 61, 221, 332
CviQI	GTAC	2 cut(s)	91, 324
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	3 cut(s)	165, 180, 308
DpnII	GATC	3 cut(s)	163, 178, 306
Eco130I	CCWWGG	1 cut(s)	62
Eco47I	GGWCC	1 cut(s)	150
Eco91I	GGTNACC	1 cut(s)	67
EcoO65I	GGTNACC	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	62
ErhI	CCWWGG	1 cut(s)	62
FaeI	CATG	2 cut(s)	66, 179
FaiI	YATR	6 cut(s)	64, 107, 177, 251, 381, 396
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	2 cut(s)	62, 175
Fnu4HI	GCNGC	1 cut(s)	319
Fsp4HI	GCNGC	1 cut(s)	319
FspBI	CTAG	1 cut(s)	167
GluI	GCNGC	1 cut(s)	319
HapII	CCGG	2 cut(s)	214, 327
Hin1II	CATG	2 cut(s)	66, 179
HinfI	GANTC	3 cut(s)	130, 172, 354
HpaII	CCGG	2 cut(s)	214, 327
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	3 cut(s)	93, 100, 266
Hpy188I	TCNGA	3 cut(s)	114, 129, 230
Hpy188III	TCNNGA	2 cut(s)	176, 406
Hpy8I	GTNNAC	3 cut(s)	93, 100, 266
Hpy99I	CGWCG	1 cut(s)	164
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	5 cut(s)	26, 100, 185, 246, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 191
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	2 cut(s)	66, 179
KpnI	GGTACC	1 cut(s)	327
Kzo9I	GATC	3 cut(s)	163, 178, 306
LmnI	GCTCC	1 cut(s)	258
LpnPI	CCDG	9 cut(s)	44, 65, 71, 92, 133, 227, 318, 340, 419
Lsp1109I	GCAGC	1 cut(s)	305
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	3 cut(s)	165, 180, 308
MbiI	CCGCTC	1 cut(s)	261
MboI	GATC	3 cut(s)	163, 178, 306
MboII	GAAGA	2 cut(s)	125, 374
MfeI	CAATTG	1 cut(s)	202
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	4 cut(s)	202, 236, 289, 313
MlyI	GAGTC	1 cut(s)	166
MnlI	CCTC	1 cut(s)	190
MspI	CCGG	2 cut(s)	214, 327
MspR9I	CCNGG	2 cut(s)	215, 328
MunI	CAATTG	1 cut(s)	202
Mva1269I	GAATGC	1 cut(s)	196
MwoI	GCNNNNNNNGC	2 cut(s)	40, 191
NciI	CCSGG	2 cut(s)	215, 328
NcoI	CCATGG	1 cut(s)	62
NdeII	GATC	3 cut(s)	163, 178, 306
NlaIII	CATG	2 cut(s)	66, 179
NlaIV	GGNNCC	1 cut(s)	325
NmuCI	GTSAC	1 cut(s)	67
PagI	TCATGA	1 cut(s)	175
PctI	GAATGC	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	130, 354
PfoI	TCCNGGA	1 cut(s)	213
PkrI	GCNGC	1 cut(s)	320
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
PspEI	GGTNACC	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	325
PspPI	GGNCC	1 cut(s)	150
RsaI	GTAC	2 cut(s)	92, 325
RsaNI	GTAC	2 cut(s)	91, 324
SatI	GCNGC	1 cut(s)	319
Sau3AI	GATC	3 cut(s)	163, 178, 306
Sau96I	GGNCC	1 cut(s)	150
SchI	GAGTC	1 cut(s)	166
ScrFI	CCNGG	2 cut(s)	215, 328
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	2 cut(s)	201, 285
SinI	GGWCC	1 cut(s)	150
Sse9I	AATT	4 cut(s)	202, 236, 289, 313
SsiI	CCGC	3 cut(s)	194, 261, 321
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	2 cut(s)	213, 326
StyI	CCWWGG	1 cut(s)	62
TaaI	ACNGT	1 cut(s)	97
TaiI	ACGT	1 cut(s)	285
TasI	AATT	4 cut(s)	202, 236, 289, 313
TatI	WGTACW	1 cut(s)	90
TfiI	GAWTC	2 cut(s)	130, 354
TscAI	CASTG	1 cut(s)	192
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	1 cut(s)	318
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	2 cut(s)	17, 125
TspRI	CASTG	1 cut(s)	192
VneI	GTGCAC	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	150
XapI	RAATTY	1 cut(s)	236
XcmI	CCANNNNNNNNNTGG	1 cut(s)	80
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.