Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000986

Physical Location & Seq

Genomic Coordinates Forward (+)

9853609 .. 9854156

Gene Structure 548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G23148.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAATTGTTTTTCGTTTTCTTTTATTATTATTGTGTTATGTGCAGGATCGAGTAATGCGAAGTTCAGAGAAAAAAATTCTGTAGTTTTTAAAAATTCTCTTGGTGTGAAAAACGTTCTCAAGATTCATTGTACATCAAAAGACGACGACCTAGGCTACCACTATTTGAGACCTGGAGTACAAATCTACGAATTTCGTTTTCATGATAGTGTTTTGAAAACTAAATTTGATTGTGAGTTATGGCAGGGACGTGGTCCTACTTACAAGTTTTATGCAAATTTTAGGGCATATAAAAGTGGCGGTCTGATAGCTCACTACGGTAAAAAGAATATTTGGGAAGCTAGAGAAGATGGTATTTACTTCACACATGGTAAAGAAATTCCTAAATTAGAGTATAAATGGAGCCCCATAGGAAAGCCTCCTAGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

16.53

Weight (kDa)

9.41

Isoelectric Point (pI)

35.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	28 - 134	5.7e-29	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11765 AT1G28305 AT1G28306 AT2G06090 AT2G23142 AT2G23148 AT2G24870 AT2G24880 AT3G10460 AT3G26860 AT3G26860 AT3G26870 AT3G26880 AT3G27329 AT3G27331 AT3G27680 AT4G10895 AT4G29037 AT5G04047 AT5G04347 AT5G04347 AT5G04350 AT5G27238 AT5G38435 AT5G38440
fragaria_vesca	FvH4_2g19740 FvH4_3g21860 FvH4_4g05400
malus_domestica	MD05G1181700.v1.1 MD13G1110700.v1.1
prunus_persica	Prupe.1G059400_v2.0.a1 Prupe.1G059600_v2.0.a1 Prupe.1G219300_v2.0.a1 Prupe.1G219600_v2.0.a1 Prupe.1G219700_v2.0.a1 Prupe.8G208500_v2.0.a1 Prupe.8G208600_v2.0.a1 Prupe.8G208800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396541 RchiOBHm_Chr4g0396551
rosa_laevigata	RLG00000009525 RLG00000009526 RLG00000012772 RLG00000013033
rosa_multiflora	Rmu_sc0001781.1_g000005 Rmu_sc0001781.1_g000008 Rmu_sc0002909.1_g000007
rosa_roxburghii	Rroxscaffold_5G00341400
rosa_rugosa	Rorug03G0349100 Rorug05G0091600 Rorug06G0160300
rosa_samantha	Rh4AG069600 Rh4AG069800 Rh4BG067300 Rh4BG067400 Rh4CG075200 Rh4CG075300 Rh4DG064800 Rh5BG181300 Rh5DG183000
rosa_wichuraiana	Rw4G005590 Rw5G016720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	300
AclI	AACGTT	1 cut(s)	114
AclWI	GGATC	1 cut(s)	55
AcsI	RAATTY	6 cut(s)	76, 94, 191, 224, 277, 378
AfaI	GTAC	2 cut(s)	133, 180
AgsI	TTSAA	1 cut(s)	217
AjiI	CACGTC	1 cut(s)	251
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	2 cut(s)	311, 341
AluI	AGCT	2 cut(s)	311, 341
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	1 cut(s)	55
ApoI	RAATTY	6 cut(s)	76, 94, 191, 224, 277, 378
AspA2I	CCTAGG	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	254
AvrII	CCTAGG	1 cut(s)	151
BanII	GRGCYC	1 cut(s)	407
BccI	CCATC	1 cut(s)	344
BciT130I	CCWGG	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	3 cut(s)	152, 342, 423
BfmI	CTRYAG	1 cut(s)	81
BlnI	CCTAGG	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	254
BmgBI	CACGTC	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	1 cut(s)	404
BmrFI	CCNGG	1 cut(s)	174
BpmI	CTGGAG	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	151
BsgI	GTGCAG	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	261
BsmAI	GTCTC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	261
Bso31I	GGTCTC	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	407
Bsp1407I	TGTACA	1 cut(s)	131
Bsp143I	GATC	1 cut(s)	47
BspACI	CCGC	1 cut(s)	300
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	404
BspPI	GGATC	1 cut(s)	55
BspTNI	GGTCTC	1 cut(s)	163
BsrGI	TGTACA	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	1 cut(s)	47
BssT1I	CCWWGG	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	320
BstAUI	TGTACA	1 cut(s)	131
BstKTI	GATC	1 cut(s)	50
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	47
BstNI	CCWGG	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	172
BstSFI	CTRYAG	1 cut(s)	81
BtrI	CACGTC	1 cut(s)	251
CciI	TCATGA	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	254
Csp6I	GTAC	2 cut(s)	132, 179
CviAII	CATG	2 cut(s)	203, 368
CviJI	RGCY	6 cut(s)	156, 311, 341, 405, 418, 426
CviKI_1	RGCY	6 cut(s)	156, 311, 341, 405, 418, 426
CviQI	GTAC	2 cut(s)	132, 179
DpnI	GATC	1 cut(s)	49
DpnII	GATC	1 cut(s)	47
DraI	TTTAAA	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	407
Eco31I	GGTCTC	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	151
EcoT38I	GRGCYC	1 cut(s)	407
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	2 cut(s)	206, 371
FaiI	YATR	9 cut(s)	40, 204, 241, 273, 289, 291, 369, 396, 410
FaqI	GGGAC	1 cut(s)	261
FatI	CATG	2 cut(s)	202, 367
FriOI	GRGCYC	1 cut(s)	407
FspBI	CTAG	3 cut(s)	152, 342, 423
GsuI	CTGGAG	1 cut(s)	195
Hin1II	CATG	2 cut(s)	206, 371
HinfI	GANTC	1 cut(s)	124
Hpy188I	TCNGA	2 cut(s)	68, 306
Hpy188III	TCNNGA	2 cut(s)	121, 203
Hpy99I	CGWCG	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4IV	ACGT	2 cut(s)	114, 250
HpyCH4V	TGCA	2 cut(s)	44, 275
HpySE526I	ACGT	2 cut(s)	114, 250
Hsp92II	CATG	2 cut(s)	206, 371
Kzo9I	GATC	1 cut(s)	47
LmnI	GCTCC	1 cut(s)	402
LpnPI	CCDG	4 cut(s)	30, 159, 186, 230
MaeI	CTAG	3 cut(s)	152, 342, 423
MaeII	ACGT	2 cut(s)	114, 250
MalI	GATC	1 cut(s)	49
MboI	GATC	1 cut(s)	47
MboII	GAAGA	1 cut(s)	359
MhlI	GDGCHC	1 cut(s)	407
MluCI	AATT	8 cut(s)	4, 76, 94, 191, 224, 277, 378, 386
MnlI	CCTC	1 cut(s)	429
MseI	TTAA	2 cut(s)	90, 430
MslI	CAYNNNNRTG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	174
NdeII	GATC	1 cut(s)	47
NlaIII	CATG	2 cut(s)	206, 371
NlaIV	GGNNCC	1 cut(s)	404
PagI	TCATGA	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	124
PflFI	GACNNNGTC	1 cut(s)	252
Psp1406I	AACGTT	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	404
PspPI	GGNCC	1 cut(s)	254
PsyI	GACNNNGTC	1 cut(s)	252
RsaI	GTAC	2 cut(s)	133, 180
RsaNI	GTAC	2 cut(s)	132, 179
RseI	CAYNNNNRTG	1 cut(s)	207
SaqAI	TTAA	2 cut(s)	90, 430
Sau3AI	GATC	1 cut(s)	47
Sau96I	GGNCC	1 cut(s)	254
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	407
SetI	ASST	6 cut(s)	117, 153, 175, 253, 313, 343
SfcI	CTRYAG	1 cut(s)	81
SinI	GGWCC	1 cut(s)	254
SmiMI	CAYNNNNRTG	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	8 cut(s)	4, 76, 94, 191, 224, 277, 378, 386
SsiI	CCGC	1 cut(s)	300
SspI	AATATT	1 cut(s)	331
SspMI	CTAG	3 cut(s)	152, 342, 423
StyD4I	CCNGG	1 cut(s)	172
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	320
TaiI	ACGT	2 cut(s)	117, 253
TaqI	TCGA	1 cut(s)	50
TasI	AATT	8 cut(s)	4, 76, 94, 191, 224, 277, 378, 386
TatI	WGTACW	2 cut(s)	131, 178
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	2 cut(s)	90, 430
Tru9I	TTAA	2 cut(s)	90, 430
TspDTI	ATGAA	3 cut(s)	17, 116, 191
Tth111I	GACNNNGTC	1 cut(s)	252
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	6 cut(s)	76, 94, 191, 224, 277, 378
XmaJI	CCTAGG	1 cut(s)	151
XspI	CTAG	3 cut(s)	152, 342, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.