Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000986

Physical Location & Seq

Genomic Coordinates Forward (+)

9772251 .. 9773095

Gene Structure 845 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG064800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTCTTTCATTGCCAACTGTTCTTGTGTGATCATCATCTTTTCCCTGGCAACCTTGACATTAACATTTTGCGAAGGGTACACTGTTCACATCGTCAATCGCTTTTGTAACAATGATAAGCCATTCACTGTTCATTGCAGATCTAAAGACGATGATCTTGGTAACCACACCCTAGCGCGAGGTCAAGACTACCACTGGCATTTTCACGGGAACTTTTGGGGGACAACTATATTCCGCTGCAATATGAAACGAGATTCAAAAGAGGAAGACGTCCTCGTTTTTAGTATGGCTGATAAATTCCCCCCTGAATGCATGCCTAGTGAGGATTGCTTTTGGCTCGTGAATGAGGATGGTTTCTATGTTACTGTTACTGATAAAAAGTTCAATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

130

Amino Acids

15.21

Weight (kDa)

5.58

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	28 - 126	1.1e-26	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11765 AT1G28305 AT1G28306 AT2G06090 AT2G23142 AT2G23148 AT2G24870 AT2G24880 AT3G10460 AT3G26860 AT3G26860 AT3G26870 AT3G26880 AT3G27329 AT3G27331 AT3G27680 AT4G10895 AT4G29037 AT5G04047 AT5G04347 AT5G04347 AT5G04350 AT5G27238 AT5G38435 AT5G38440
fragaria_vesca	FvH4_2g19740 FvH4_3g21860 FvH4_4g05400
malus_domestica	MD05G1181700.v1.1 MD13G1110700.v1.1
prunus_persica	Prupe.1G059400_v2.0.a1 Prupe.1G059600_v2.0.a1 Prupe.1G219300_v2.0.a1 Prupe.1G219600_v2.0.a1 Prupe.1G219700_v2.0.a1 Prupe.8G208500_v2.0.a1 Prupe.8G208600_v2.0.a1 Prupe.8G208800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396541 RchiOBHm_Chr4g0396551
rosa_laevigata	RLG00000009525 RLG00000009526 RLG00000012772 RLG00000013033
rosa_multiflora	Rmu_sc0001781.1_g000005 Rmu_sc0001781.1_g000008 Rmu_sc0002909.1_g000007
rosa_roxburghii	Rroxscaffold_5G00341400
rosa_rugosa	Rorug03G0349100 Rorug05G0091600 Rorug06G0160300
rosa_samantha	Rh4AG069600 Rh4AG069800 Rh4BG067300 Rh4BG067400 Rh4CG075200 Rh4CG075300 Rh4DG064800 Rh5BG181300 Rh5DG183000
rosa_wichuraiana	Rw4G005590 Rw5G016720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	273
AccII	CGCG	1 cut(s)	178
AciI	CCGC	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	296
AcyI	GRCGYC	1 cut(s)	270
AfaI	GTAC	1 cut(s)	80
AgsI	TTSAA	2 cut(s)	258, 385
AjnI	CCWGG	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	237
ApoI	RAATTY	1 cut(s)	296
AspLEI	GCGC	1 cut(s)	178
BauI	CACGAG	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	1 cut(s)	344
BciT130I	CCWGG	1 cut(s)	47
BclI	TGATCA	1 cut(s)	30
BfaI	CTAG	2 cut(s)	173, 318
BglII	AGATCT	1 cut(s)	140
BisI	GCNGC	1 cut(s)	238
BlsI	GCNGC	1 cut(s)	239
Bme1390I	CCNGG	1 cut(s)	47
BmrFI	CCNGG	1 cut(s)	47
BpiI	GAAGAC	1 cut(s)	273
BsaBI	GATNNNNATC	1 cut(s)	35
BsaHI	GRCGYC	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	45
Bse1I	ACTGG	1 cut(s)	200
Bse3DI	GCAATG	2 cut(s)	9, 133
Bse8I	GATNNNNATC	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	355
BseJI	GATNNNNATC	1 cut(s)	35
BseMI	GCAATG	2 cut(s)	9, 133
BseNI	ACTGG	1 cut(s)	200
BseXI	GCAGC	1 cut(s)	224
Bsh1236I	CGCG	1 cut(s)	178
BslFI	GGGAC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	235
BsmI	GAATGC	1 cut(s)	314
Bsp143I	GATC	3 cut(s)	30, 140, 154
BspACI	CCGC	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	178
BsrDI	GCAATG	2 cut(s)	9, 133
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	3 cut(s)	30, 140, 154
BssNI	GRCGYC	1 cut(s)	270
BssSI	CACGAG	1 cut(s)	338
Bst2BI	CACGAG	1 cut(s)	338
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	4 cut(s)	20, 85, 130, 367
BstACI	GRCGYC	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	314
BstEII	GGTNACC	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	355
BstFNI	CGCG	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	3 cut(s)	33, 143, 157
BstMBI	GATC	3 cut(s)	30, 140, 154
BstNI	CCWGG	1 cut(s)	47
BstNSI	RCATGY	1 cut(s)	316
BstPI	GGTNACC	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	45
BstUI	CGCG	1 cut(s)	178
BstV1I	GCAGC	1 cut(s)	224
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	355
BtsIMutI	CAGTG	3 cut(s)	81, 126, 193
Cac8I	GCNNGC	1 cut(s)	314
CfoI	GCGC	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	1 cut(s)	313
CviJI	RGCY	3 cut(s)	121, 290, 337
CviKI_1	RGCY	3 cut(s)	121, 290, 337
CviQI	GTAC	1 cut(s)	79
DpnI	GATC	3 cut(s)	32, 142, 156
DpnII	GATC	3 cut(s)	30, 140, 154
Eco91I	GGTNACC	1 cut(s)	161
EcoO65I	GGTNACC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	45
EcoT22I	ATGCAT	1 cut(s)	314
FaeI	CATG	1 cut(s)	316
FaiI	YATR	5 cut(s)	230, 245, 287, 314, 360
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	1 cut(s)	312
FbaI	TGATCA	1 cut(s)	30
Fnu4HI	GCNGC	1 cut(s)	238
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	1 cut(s)	238
FspBI	CTAG	2 cut(s)	173, 318
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	238
HhaI	GCGC	1 cut(s)	178
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	1 cut(s)	316
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	1 cut(s)	254
Hpy166II	GTNNAC	2 cut(s)	81, 88
Hpy188III	TCNNGA	2 cut(s)	185, 340
Hpy8I	GTNNAC	2 cut(s)	81, 88
HpyAV	CCTTC	1 cut(s)	68
HpyCH4III	ACNGT	4 cut(s)	20, 85, 130, 367
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	3 cut(s)	138, 240, 312
HpySE526I	ACGT	1 cut(s)	270
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	316
HspAI	GCGC	1 cut(s)	176
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	3 cut(s)	30, 140, 154
LpnPI	CCDG	4 cut(s)	32, 59, 181, 318
Lsp1109I	GCAGC	1 cut(s)	224
MaeI	CTAG	2 cut(s)	173, 318
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	4 cut(s)	107, 161, 361, 367
MalI	GATC	3 cut(s)	32, 142, 156
MboI	GATC	3 cut(s)	30, 140, 154
MboII	GAAGA	1 cut(s)	278
MfeI	CAATTG	1 cut(s)	385
MflI	RGATCY	1 cut(s)	140
MluCI	AATT	2 cut(s)	296, 385
MnlI	CCTC	5 cut(s)	173, 256, 284, 316, 340
Mph1103I	ATGCAT	1 cut(s)	314
MseI	TTAA	1 cut(s)	62
MspA1I	CMGCKG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	47
MunI	CAATTG	1 cut(s)	385
Mva1269I	GAATGC	1 cut(s)	314
MvaI	CCWGG	1 cut(s)	47
MvnI	CGCG	1 cut(s)	178
NdeII	GATC	3 cut(s)	30, 140, 154
NlaIII	CATG	1 cut(s)	316
NsiI	ATGCAT	1 cut(s)	314
NspI	RCATGY	1 cut(s)	316
PaeI	GCATGC	1 cut(s)	316
PctI	GAATGC	1 cut(s)	314
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	45
PspEI	GGTNACC	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	45
PsuI	RGATCY	1 cut(s)	140
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	62
SatI	GCNGC	1 cut(s)	238
Sau3AI	GATC	3 cut(s)	30, 140, 154
ScrFI	CCNGG	1 cut(s)	47
SetI	ASST	3 cut(s)	56, 184, 273
SphI	GCATGC	1 cut(s)	316
Sse9I	AATT	2 cut(s)	296, 385
SsiI	CCGC	1 cut(s)	235
SspMI	CTAG	2 cut(s)	173, 318
StyD4I	CCNGG	1 cut(s)	45
TaaI	ACNGT	4 cut(s)	20, 85, 130, 367
TaiI	ACGT	1 cut(s)	273
TasI	AATT	2 cut(s)	296, 385
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	62
Tru9I	TTAA	1 cut(s)	62
TscAI	CASTG	3 cut(s)	88, 133, 200
TseI	GCWGC	1 cut(s)	237
TspDTI	ATGAA	2 cut(s)	122, 260
TspRI	CASTG	3 cut(s)	88, 133, 200
XapI	RAATTY	1 cut(s)	296
XceI	RCATGY	1 cut(s)	316
XspI	CTAG	2 cut(s)	173, 318
ZraI	GACGTC	1 cut(s)	271
Zsp2I	ATGCAT	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.