Prupe.1G219600_v2.0.a1

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000986
Physical Location & Seq
Reverse (-)
23413846 .. 23414223
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G219600.1

Sequence Viewer

Length: 378 bp
CTAGCATCTGTTGCCCATGGTGACTCGGGGGCCACACCTGGTAAAAAATATTTCATCCGCATTGTCAACAACCTTGACAACAAACAGCTGGCCTTCGTATGTAAATCCGCAGATGATGTCATTTCGCATAGTCTTCCTCATCGCGGGGATCAGTTTGAATTCGGATTTCGTCTGAATTTCTTTGGCACCACCCTTTACTTCTGCAATTTAAAGTACCAGAACCACCATGTAGTTTTTGATGCATGGAAACTTGATAAACAACTTTTGAGACTGTGTGGTGGTGGTGTCCATTGCATATGGAGAGCGCAGGAAGATGGGATTTACTTGTTTAACACCCAATGGGGCAATTGGTTAAGGAAGTACGTTTGGGACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

126

Amino Acids

14.51

Weight (kDa)

8.73

Isoelectric Point (pI)

15.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 185
AccII CGCG 1 cut(s) 144
AciI CCGC 3 cut(s) 58, 108, 144
AclWI GGATC 1 cut(s) 156
AcsI RAATTY 2 cut(s) 158, 175
AfaI GTAC 2 cut(s) 215, 362
AfiI CCNNNNNNNGG 1 cut(s) 143
AgsI TTSAA 1 cut(s) 158
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
Alw26I GTCTC 1 cut(s) 262
AlwI GGATC 1 cut(s) 156
Ama87I CYCGRG 1 cut(s) 25
AoxI GGCC 2 cut(s) 30, 90
ApoI RAATTY 2 cut(s) 158, 175
AspLEI GCGC 1 cut(s) 307
AspS9I GGNCC 1 cut(s) 30
AsuHPI GGTGA 1 cut(s) 32
AvaI CYCGRG 1 cut(s) 25
BanI GGYRCC 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 125
BccI CCATC 1 cut(s) 308
BciT130I CCWGG 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 262
BfaI CTAG 1 cut(s) 2
Bme1390I CCNGG 1 cut(s) 39
BmeT110I CYCGRG 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 30
BmiI GGNNCC 2 cut(s) 31, 187
BmrFI CCNGG 1 cut(s) 39
BmsI GCATC 2 cut(s) 14, 229
BpiI GAAGAC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse3DI GCAATG 1 cut(s) 289
BseBI CCWGG 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 1 cut(s) 54
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMI GCAATG 1 cut(s) 289
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 2 cut(s) 32, 92
BshNI GGYRCC 1 cut(s) 185
BsiHKCI CYCGRG 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 262
BsnI GGCC 2 cut(s) 32, 92
BsoBI CYCGRG 1 cut(s) 25
Bsp143I GATC 1 cut(s) 148
Bsp19I CCATGG 1 cut(s) 16
BspACI CCGC 3 cut(s) 58, 108, 144
BspANI GGCC 2 cut(s) 32, 92
BspFNI CGCG 1 cut(s) 144
BspLI GGNNCC 2 cut(s) 31, 187
BspPI GGATC 1 cut(s) 156
BspT107I GGYRCC 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 289
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 1 cut(s) 148
BssT1I CCWWGG 1 cut(s) 16
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 273
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 90
BstDSI CCRYGG 1 cut(s) 16
BstF5I GGATG 1 cut(s) 54
BstFNI CGCG 1 cut(s) 144
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 1 cut(s) 148
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 37
BstUI CGCG 1 cut(s) 144
BstV2I GAAGAC 1 cut(s) 125
BsuRI GGCC 2 cut(s) 32, 92
BtgI CCRYGG 1 cut(s) 16
BtgZI GCGATG 1 cut(s) 125
BtsCI GGATG 1 cut(s) 54
Cac8I GCNNGC 1 cut(s) 90
CfoI GCGC 1 cut(s) 307
Cfr13I GGNCC 1 cut(s) 30
CsiI ACCWGGT 1 cut(s) 37
Csp6I GTAC 2 cut(s) 214, 361
CviAII CATG 3 cut(s) 17, 227, 243
CviJI RGCY 3 cut(s) 32, 88, 92
CviKI_1 RGCY 3 cut(s) 32, 88, 92
CviQI GTAC 2 cut(s) 214, 361
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
DraI TTTAAA 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 16
Eco88I CYCGRG 1 cut(s) 25
EcoRI GAATTC 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 16
EcoT22I ATGCAT 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 16
FaeI CATG 3 cut(s) 20, 230, 246
FaiI YATR 7 cut(s) 18, 100, 129, 228, 244, 296, 298
FatI CATG 3 cut(s) 16, 226, 242
FauI CCCGC 1 cut(s) 137
FauNDI CATATG 1 cut(s) 296
FokI GGATG 1 cut(s) 41
FspBI CTAG 1 cut(s) 2
GlaI GCGC 1 cut(s) 306
HaeIII GGCC 2 cut(s) 32, 92
HhaI GCGC 1 cut(s) 307
Hin1II CATG 3 cut(s) 20, 230, 246
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 1 cut(s) 23
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 2 cut(s) 164, 174
Hpy8I GTNNAC 1 cut(s) 67
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 273
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 3 cut(s) 204, 242, 294
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpySE526I ACGT 1 cut(s) 363
Hsp92II CATG 3 cut(s) 20, 230, 246
HspAI GCGC 1 cut(s) 305
Kzo9I GATC 1 cut(s) 148
LpnPI CCDG 5 cut(s) 24, 51, 74, 230, 293
LweI GCATC 2 cut(s) 14, 229
MabI ACCWGGT 1 cut(s) 37
MaeI CTAG 1 cut(s) 2
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 1 cut(s) 20
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 2 cut(s) 125, 323
MfeI CAATTG 1 cut(s) 346
MluCI AATT 5 cut(s) 158, 175, 205, 346, 373
MlyI GAGTC 1 cut(s) 17
MnlI CCTC 1 cut(s) 147
Mph1103I ATGCAT 1 cut(s) 244
MseI TTAA 4 cut(s) 209, 330, 353, 376
MspA1I CMGCKG 1 cut(s) 88
MspR9I CCNGG 1 cut(s) 39
MunI CAATTG 1 cut(s) 346
MvaI CCWGG 1 cut(s) 39
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 11
NcoI CCATGG 1 cut(s) 16
NdeI CATATG 1 cut(s) 296
NdeII GATC 1 cut(s) 148
NlaIII CATG 3 cut(s) 20, 230, 246
NlaIV GGNNCC 2 cut(s) 31, 187
NmuCI GTSAC 1 cut(s) 20
NsiI ATGCAT 1 cut(s) 244
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 2 cut(s) 31, 187
PspPI GGNCC 1 cut(s) 30
PvuII CAGCTG 1 cut(s) 88
RsaI GTAC 2 cut(s) 215, 362
RsaNI GTAC 2 cut(s) 214, 361
SaqAI TTAA 4 cut(s) 209, 330, 353, 376
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 1 cut(s) 30
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 1 cut(s) 39
SetI ASST 4 cut(s) 40, 75, 90, 366
SexAI ACCWGGT 1 cut(s) 37
SfaNI GCATC 2 cut(s) 14, 229
Sse9I AATT 5 cut(s) 158, 175, 205, 346, 373
SsiI CCGC 3 cut(s) 58, 108, 144
SspI AATATT 1 cut(s) 50
SspMI CTAG 1 cut(s) 2
StyD4I CCNGG 1 cut(s) 37
StyI CCWWGG 1 cut(s) 16
TaaI ACNGT 1 cut(s) 273
TaiI ACGT 1 cut(s) 366
TasI AATT 5 cut(s) 158, 175, 205, 346, 373
Tru1I TTAA 4 cut(s) 209, 330, 353, 376
Tru9I TTAA 4 cut(s) 209, 330, 353, 376
TseFI GTSAC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 43
XapI RAATTY 2 cut(s) 158, 175
XspI CTAG 1 cut(s) 2
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.