AT1G11765

pumilio homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000986
Physical Location & Seq
Forward (+)
3973874 .. 3974594
721 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11765.1

Sequence Viewer

Length: 414 bp
ATGAAAAATACTTCAATCTTTCTAGTTGTCTTTGCCCTATGCATGATTAGCAATGCATATGGCCATTCGAATCCATTTAAAGGAAAAAAGACGTCGTTGTTATTCAGGAACAGTCTTTCTCACAACAAATGGCTCAAGGTACGTTGTAAATCTGGGGACAATGATGTTCGTGAAAGATATATGAAACCTGGAGAAGATTGGGGTTTTAGTTTCCACGATGACGTTATGGGAGAAACACTTTTCTGGTGTACAATGTATAAAGGAGCTGATTACAAGGTACAAAAGAAGTTTGACGCATATGTTCAAGACAAGAGAATGCCTCATGGTGGCTCGTATAATTATGTTGCTCAAGAAGATGGGATCTATCACAGTACTTTGATACACCGTATGCGGAAGATGTATGATTGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

137

Amino Acids

16.19

Weight (kDa)

9.32

Isoelectric Point (pI)

34.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 34 - 136 3.4e-26 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 95
AciI CCGC 1 cut(s) 391
AclWI GGATC 1 cut(s) 368
AcoI YGGCCR 1 cut(s) 61
AcyI GRCGYC 1 cut(s) 92
AfaI GTAC 4 cut(s) 141, 250, 279, 373
AfiI CCNNNNNNNGG 2 cut(s) 80, 326
AgsI TTSAA 2 cut(s) 15, 305
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
AlwI GGATC 1 cut(s) 368
AoxI GGCC 1 cut(s) 61
AsuII TTCGAA 1 cut(s) 68
BalI TGGCCA 1 cut(s) 63
BccI CCATC 1 cut(s) 350
BciT130I CCWGG 1 cut(s) 189
BfaI CTAG 1 cut(s) 23
BmcAI AGTACT 1 cut(s) 373
Bme1390I CCNGG 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 189
BplI GAGNNNNNCTC 2 cut(s) 304, 336
BpmI CTGGAG 1 cut(s) 210
Bpu14I TTCGAA 1 cut(s) 68
BpuEI CTTGAG 2 cut(s) 119, 333
BsaHI GRCGYC 1 cut(s) 92
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 326
Bse3DI GCAATG 1 cut(s) 58
BseBI CCWGG 1 cut(s) 189
BseLI CCNNNNNNNGG 2 cut(s) 80, 326
BseMI GCAATG 1 cut(s) 58
BshFI GGCC 1 cut(s) 63
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 2 cut(s) 80, 326
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 1 cut(s) 321
BsnI GGCC 1 cut(s) 63
Bsp119I TTCGAA 1 cut(s) 68
Bsp1407I TGTACA 1 cut(s) 248
Bsp143I GATC 1 cut(s) 360
BspACI CCGC 1 cut(s) 391
BspANI GGCC 1 cut(s) 63
BspPI GGATC 1 cut(s) 368
BspT104I TTCGAA 1 cut(s) 68
BsrDI GCAATG 1 cut(s) 58
BsrGI TGTACA 1 cut(s) 248
BssMI GATC 1 cut(s) 360
BssNI GRCGYC 1 cut(s) 92
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 3 cut(s) 113, 371, 386
BstACI GRCGYC 1 cut(s) 92
BstAUI TGTACA 1 cut(s) 248
BstBI TTCGAA 1 cut(s) 68
BstKTI GATC 1 cut(s) 363
BstMBI GATC 1 cut(s) 360
BstMWI GCNNNNNNNGC 1 cut(s) 48
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 360
BstYI RGATCY 1 cut(s) 360
BsuRI GGCC 1 cut(s) 63
CseI GACGC 1 cut(s) 302
Csp6I GTAC 4 cut(s) 140, 249, 278, 372
CviAII CATG 2 cut(s) 43, 323
CviJI RGCY 4 cut(s) 63, 133, 266, 330
CviKI_1 RGCY 4 cut(s) 63, 133, 266, 330
CviQI GTAC 4 cut(s) 140, 249, 278, 372
DpnI GATC 1 cut(s) 362
DpnII GATC 1 cut(s) 360
DraI TTTAAA 1 cut(s) 79
EaeI YGGCCR 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 187
EcoT22I ATGCAT 2 cut(s) 44, 58
FaeI CATG 2 cut(s) 46, 326
FaqI GGGAC 1 cut(s) 170
FatI CATG 2 cut(s) 42, 322
FauNDI CATATG 2 cut(s) 58, 298
FspBI CTAG 1 cut(s) 23
GsuI CTGGAG 1 cut(s) 210
HaeIII GGCC 1 cut(s) 63
HgaI GACGC 1 cut(s) 302
Hin1I GRCGYC 1 cut(s) 92
Hin1II CATG 2 cut(s) 46, 326
HinfI GANTC 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 249
Hpy188III TCNNGA 4 cut(s) 106, 170, 305, 350
Hpy8I GTNNAC 1 cut(s) 249
Hpy99I CGWCG 1 cut(s) 97
HpyCH4III ACNGT 3 cut(s) 113, 371, 386
HpyCH4IV ACGT 3 cut(s) 92, 142, 222
HpyCH4V TGCA 2 cut(s) 42, 56
HpyF10VI GCNNNNNNNGC 1 cut(s) 48
HpySE526I ACGT 3 cut(s) 92, 142, 222
Hsp92I GRCGYC 1 cut(s) 92
Hsp92II CATG 2 cut(s) 46, 326
Kzo9I GATC 1 cut(s) 360
LmnI GCTCC 1 cut(s) 263
LpnPI CCDG 5 cut(s) 91, 138, 174, 201, 229
MaeI CTAG 1 cut(s) 23
MaeII ACGT 3 cut(s) 92, 142, 222
MalI GATC 1 cut(s) 362
MboI GATC 1 cut(s) 360
MboII GAAGA 3 cut(s) 206, 365, 406
MflI RGATCY 1 cut(s) 360
MlsI TGGCCA 1 cut(s) 63
MluCI AATT 2 cut(s) 337, 409
MluNI TGGCCA 1 cut(s) 63
MnlI CCTC 1 cut(s) 330
Mox20I TGGCCA 1 cut(s) 63
Mph1103I ATGCAT 2 cut(s) 44, 58
MscI TGGCCA 1 cut(s) 63
MseI TTAA 1 cut(s) 78
Msp20I TGGCCA 1 cut(s) 63
MspR9I CCNGG 1 cut(s) 189
Mva1269I GAATGC 1 cut(s) 321
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 48
NdeI CATATG 2 cut(s) 58, 298
NdeII GATC 1 cut(s) 360
NlaIII CATG 2 cut(s) 46, 326
NsiI ATGCAT 2 cut(s) 44, 58
NspV TTCGAA 1 cut(s) 68
PctI GAATGC 1 cut(s) 321
PfeI GAWTC 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PsuI RGATCY 1 cut(s) 360
RsaI GTAC 4 cut(s) 141, 250, 279, 373
RsaNI GTAC 4 cut(s) 140, 249, 278, 372
SaqAI TTAA 1 cut(s) 78
Sau3AI GATC 1 cut(s) 360
ScaI AGTACT 1 cut(s) 373
ScrFI CCNGG 1 cut(s) 189
SetI ASST 7 cut(s) 95, 141, 145, 190, 225, 268, 279
SfuI TTCGAA 1 cut(s) 68
SmlI CTYRAG 2 cut(s) 134, 348
SmoI CTYRAG 2 cut(s) 134, 348
Sse9I AATT 2 cut(s) 337, 409
SsiI CCGC 1 cut(s) 391
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 187
TaaI ACNGT 3 cut(s) 113, 371, 386
TaiI ACGT 3 cut(s) 95, 145, 225
TaqI TCGA 1 cut(s) 68
TasI AATT 2 cut(s) 337, 409
TatI WGTACW 2 cut(s) 248, 371
TfiI GAWTC 1 cut(s) 70
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TspDTI ATGAA 2 cut(s) 17, 197
XspI CTAG 1 cut(s) 23
ZraI GACGTC 1 cut(s) 93
ZrmI AGTACT 1 cut(s) 373
Zsp2I ATGCAT 2 cut(s) 44, 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.