MD13G1110700.v1.1

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000986
Physical Location & Seq
Reverse (-)
8048534 .. 8048956
423 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1110700.v1.1.491

Sequence Viewer

Length: 423 bp
ATGAAACTTTGCCAAACCTGCATTTCCATTTTCTTCTTCTTGCTTATCGGTCTTCTGACGAGCCAATCCGCCCTAGACAATAAGGCATTCGAGAAGATTCGGGTGCATATCGTCAACGGCTTCCAAAGCGAGACATTGCAAGTTCATTGTAAATCCAAGGAAAATGATTTAGGGGATCGAAATATCCCAGTGAACCAGGAGTTCAGTTGGAAGTTTCACATAAACATTTGGAGAAGTACTCTCTTCTTTTGCGACACACGATGGAGTCGAGGACATAAAAGATTTGATGCCTTTGCTGTTAGATACGCTTTAATGGATTACTGCAACGGAAATTGTGTGTGGAAAGCAAATGAGACCGCGATTTTCTTGCTTGATAATCACAATCAAACATATATCGAGCTGCATAGTTGGGAATGCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

141

Amino Acids

16.62

Weight (kDa)

7.63

Isoelectric Point (pI)

54.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 34 - 137 1.9e-25 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 26
AccII CGCG 1 cut(s) 359
AciI CCGC 2 cut(s) 69, 357
AclWI GGATC 1 cut(s) 183
AfaI GTAC 1 cut(s) 238
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 1 cut(s) 400
AluI AGCT 1 cut(s) 400
Alw26I GTCTC 2 cut(s) 125, 347
AlwI GGATC 1 cut(s) 183
ApeKI GCWGC 1 cut(s) 400
BbsI GAAGAC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 387
BccI CCATC 1 cut(s) 255
BceAI ACGGC 1 cut(s) 133
BcgI CGANNNNNNTGC 2 cut(s) 349, 383
BciT130I CCWGG 1 cut(s) 197
BcoDI GTCTC 2 cut(s) 125, 347
BfaI CTAG 1 cut(s) 74
BfuAI ACCTGC 1 cut(s) 26
BisI GCNGC 1 cut(s) 401
BlsI GCNGC 1 cut(s) 402
BmcAI AGTACT 1 cut(s) 238
Bme1390I CCNGG 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 197
BmrI ACTGGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 277
BmuI ACTGGG 1 cut(s) 182
BpiI GAAGAC 1 cut(s) 44
BplI GAGNNNNNCTC 2 cut(s) 223, 255
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 134
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 156
BseMI GCAATG 1 cut(s) 134
BseNI ACTGG 1 cut(s) 188
BseXI GCAGC 1 cut(s) 387
Bsh1236I CGCG 1 cut(s) 359
BsmAI GTCTC 2 cut(s) 125, 347
BsmI GAATGC 2 cut(s) 86, 419
Bso31I GGTCTC 1 cut(s) 347
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 2 cut(s) 69, 357
BspFNI CGCG 1 cut(s) 359
BspMI ACCTGC 1 cut(s) 26
BspPI GGATC 1 cut(s) 183
BspTNI GGTCTC 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 134
BsrI ACTGG 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 1 cut(s) 175
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 197
Bst6I CTCTTC 1 cut(s) 248
BstFNI CGCG 1 cut(s) 359
BstKTI GATC 1 cut(s) 178
BstMAI GTCTC 2 cut(s) 125, 347
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 2 cut(s) 18, 126
BstNI CCWGG 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 195
BstUI CGCG 1 cut(s) 359
BstV1I GCAGC 1 cut(s) 387
BstV2I GAAGAC 1 cut(s) 44
BtsIMutI CAGTG 1 cut(s) 195
BveI ACCTGC 1 cut(s) 26
Csp6I GTAC 1 cut(s) 237
CviJI RGCY 3 cut(s) 63, 120, 400
CviKI_1 RGCY 3 cut(s) 63, 120, 400
CviQI GTAC 1 cut(s) 237
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
EciI GGCGGA 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 156
Eco31I GGTCTC 1 cut(s) 347
EcoRII CCWGG 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaiI YATR 6 cut(s) 108, 221, 276, 391, 393, 405
Fnu4HI GCNGC 1 cut(s) 401
Fsp4HI GCNGC 1 cut(s) 401
FspBI CTAG 1 cut(s) 74
GluI GCNGC 1 cut(s) 401
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 2 cut(s) 97, 265
Hpy166II GTNNAC 2 cut(s) 115, 193
Hpy188I TCNGA 1 cut(s) 57
Hpy188III TCNNGA 1 cut(s) 91
Hpy8I GTNNAC 2 cut(s) 115, 193
HpyCH4V TGCA 5 cut(s) 21, 106, 139, 324, 403
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 126
Kzo9I GATC 1 cut(s) 175
LpnPI CCDG 5 cut(s) 31, 182, 201, 209, 403
Lsp1109I GCAGC 1 cut(s) 387
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 74
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 5 cut(s) 25, 28, 44, 106, 235
MluCI AATT 1 cut(s) 331
MlyI GAGTC 1 cut(s) 274
MmeI TCCRAC 1 cut(s) 188
MnlI CCTC 1 cut(s) 263
MseI TTAA 1 cut(s) 311
MspR9I CCNGG 1 cut(s) 197
Mva1269I GAATGC 2 cut(s) 86, 419
MvaI CCWGG 1 cut(s) 197
MvnI CGCG 1 cut(s) 359
MwoI GCNNNNNNNGC 2 cut(s) 18, 126
NdeII GATC 1 cut(s) 175
PcsI WCGNNNNNNNCGW 1 cut(s) 265
PctI GAATGC 2 cut(s) 86, 419
PfeI GAWTC 1 cut(s) 97
PkrI GCNGC 1 cut(s) 402
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SaqAI TTAA 1 cut(s) 311
SatI GCNGC 1 cut(s) 401
Sau3AI GATC 1 cut(s) 175
ScaI AGTACT 1 cut(s) 238
SchI GAGTC 1 cut(s) 274
ScrFI CCNGG 1 cut(s) 197
SetI ASST 2 cut(s) 20, 402
SfaNI GCATC 1 cut(s) 277
Sse9I AATT 1 cut(s) 331
SsiI CCGC 2 cut(s) 69, 357
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 1 cut(s) 195
StyI CCWWGG 1 cut(s) 156
TaqI TCGA 4 cut(s) 90, 178, 268, 396
TaqII GACCGA 1 cut(s) 38
TasI AATT 1 cut(s) 331
TatI WGTACW 1 cut(s) 236
TfiI GAWTC 1 cut(s) 97
Tru1I TTAA 1 cut(s) 311
Tru9I TTAA 1 cut(s) 311
TscAI CASTG 1 cut(s) 195
TseI GCWGC 1 cut(s) 400
TspDTI ATGAA 2 cut(s) 17, 134
TspGWI ACGGA 1 cut(s) 342
TspRI CASTG 1 cut(s) 195
XspI CTAG 1 cut(s) 74
ZrmI AGTACT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.