Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000986

Physical Location & Seq

Genomic Coordinates Forward (+)

4675074 .. 4675589

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g05400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGTACAAAAGGGTGCTATTGAGATTGGTGATAGGTGAGGAGTTCACCGTCCGTATGCAGCAGTTTGAGAAATCTATGGGAGCTTCATGGTTGCTATATATTAAGCTTCTTTGCACTTCAGTTCAACCACAGATTGGCACCATGTCTTTCAGTACTAGTTTCTCTTATGTGATCTTCACCTTGGCCCTAGCAACCTTGACATTAACATGTTCTGCAGACGATGTGAAATGGACTCCAGTGTGTCAGTGGCACAACGTTCACCTCGTCAATGGCTTCTCTACCAACAAGAAGCCATTGACTTTACATTGCCAATGGAAAGACGATGATCTTGGTGAACACACCCTATGGAACGGCCAAGACTCCAAGAGTACTGGTTTCATTTCGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

130

Amino Acids

14.68

Weight (kDa)

7.7

Isoelectric Point (pI)

28.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	85 - 121	2e-06	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11765 AT1G28305 AT1G28306 AT2G06090 AT2G23142 AT2G23148 AT2G24870 AT2G24880 AT3G10460 AT3G26860 AT3G26860 AT3G26870 AT3G26880 AT3G27329 AT3G27331 AT3G27680 AT4G10895 AT4G29037 AT5G04047 AT5G04347 AT5G04347 AT5G04350 AT5G27238 AT5G38435 AT5G38440
fragaria_vesca	FvH4_2g19740 FvH4_3g21860 FvH4_4g05400
malus_domestica	MD05G1181700.v1.1 MD13G1110700.v1.1
prunus_persica	Prupe.1G059400_v2.0.a1 Prupe.1G059600_v2.0.a1 Prupe.1G219300_v2.0.a1 Prupe.1G219600_v2.0.a1 Prupe.1G219700_v2.0.a1 Prupe.8G208500_v2.0.a1 Prupe.8G208600_v2.0.a1 Prupe.8G208800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396541 RchiOBHm_Chr4g0396551
rosa_laevigata	RLG00000009525 RLG00000009526 RLG00000012772 RLG00000013033
rosa_multiflora	Rmu_sc0001781.1_g000005 Rmu_sc0001781.1_g000008 Rmu_sc0002909.1_g000007
rosa_roxburghii	Rroxscaffold_5G00341400
rosa_rugosa	Rorug03G0349100 Rorug05G0091600 Rorug06G0160300
rosa_samantha	Rh4AG069600 Rh4AG069800 Rh4BG067300 Rh4BG067400 Rh4CG075200 Rh4CG075300 Rh4DG064800 Rh5BG181300 Rh5DG183000
rosa_wichuraiana	Rw4G005590 Rw5G016720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AccB7I	CCANNNNNTGG	1 cut(s)	134
AclI	AACGTT	1 cut(s)	255
AcoI	YGGCCR	1 cut(s)	352
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	3 cut(s)	5, 154, 370
AfiI	CCNNNNNNNGG	1 cut(s)	134
AflIII	ACRYGT	1 cut(s)	206
AgsI	TTSAA	1 cut(s)	125
AhlI	ACTAGT	1 cut(s)	155
AluBI	AGCT	2 cut(s)	83, 106
AluI	AGCT	2 cut(s)	83, 106
AoxI	GGCC	3 cut(s)	183, 352, 384
ApeKI	GCWGC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	184
AsuHPI	GGTGA	6 cut(s)	37, 40, 47, 169, 251, 344
BanI	GGYRCC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	70
BceAI	ACGGC	1 cut(s)	367
BcuI	ACTAGT	1 cut(s)	155
BfaI	CTAG	2 cut(s)	156, 188
BfmI	CTRYAG	1 cut(s)	213
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
BmcAI	AGTACT	2 cut(s)	154, 370
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	1 cut(s)	139
BpmI	CTGGAG	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse1I	ACTGG	2 cut(s)	236, 376
Bse3DI	GCAATG	1 cut(s)	304
BseDI	CCNNGG	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMI	GCAATG	1 cut(s)	304
BseNI	ACTGG	2 cut(s)	236, 376
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	70
BshFI	GGCC	3 cut(s)	185, 354, 386
BshNI	GGYRCC	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	134
BsnI	GGCC	3 cut(s)	185, 354, 386
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	171, 325
BspANI	GGCC	3 cut(s)	185, 354, 386
BspLI	GGNNCC	1 cut(s)	139
BspMAI	CTGCAG	1 cut(s)	217
BspT107I	GGYRCC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	304
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	236, 376
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	2 cut(s)	171, 325
BssT1I	CCWWGG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	49
BstAUI	TGTACA	1 cut(s)	3
BstKTI	GATC	2 cut(s)	174, 328
BstMBI	GATC	2 cut(s)	171, 325
BstNSI	RCATGY	1 cut(s)	210
BstSFI	CTRYAG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	70
BsuRI	GGCC	3 cut(s)	185, 354, 386
BtsIMutI	CAGTG	2 cut(s)	243, 251
Cfr13I	GGNCC	1 cut(s)	184
Csp6I	GTAC	3 cut(s)	4, 153, 369
CviAII	CATG	3 cut(s)	87, 142, 207
CviJI	RGCY	7 cut(s)	83, 106, 185, 273, 292, 354, 386
CviKI_1	RGCY	7 cut(s)	83, 106, 185, 273, 292, 354, 386
CviQI	GTAC	3 cut(s)	4, 153, 369
DpnI	GATC	2 cut(s)	173, 327
DpnII	GATC	2 cut(s)	171, 325
EaeI	YGGCCR	1 cut(s)	352
Eco130I	CCWWGG	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	3 cut(s)	90, 145, 210
FaiI	YATR	9 cut(s)	56, 77, 88, 97, 99, 143, 168, 208, 346
FatI	CATG	3 cut(s)	86, 141, 206
Fnu4HI	GCNGC	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	59
FspBI	CTAG	2 cut(s)	156, 188
GluI	GCNGC	1 cut(s)	59
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	3 cut(s)	185, 354, 386
Hin1II	CATG	3 cut(s)	90, 145, 210
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	2 cut(s)	232, 359
HphI	GGTGA	6 cut(s)	37, 40, 47, 169, 251, 344
Hpy166II	GTNNAC	3 cut(s)	45, 259, 335
Hpy8I	GTNNAC	3 cut(s)	45, 259, 335
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	3 cut(s)	58, 114, 215
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	3 cut(s)	90, 145, 210
Kzo9I	GATC	2 cut(s)	171, 325
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	2 cut(s)	249, 357
Lsp1109I	GCAGC	1 cut(s)	70
MaeI	CTAG	2 cut(s)	156, 188
MaeII	ACGT	1 cut(s)	255
MalI	GATC	2 cut(s)	173, 327
MboI	GATC	2 cut(s)	171, 325
MboII	GAAGA	1 cut(s)	166
MlyI	GAGTC	2 cut(s)	226, 353
MnlI	CCTC	2 cut(s)	31, 272
MseI	TTAA	2 cut(s)	102, 203
MslI	CAYNNNNRTG	1 cut(s)	205
NdeII	GATC	2 cut(s)	171, 325
NlaIII	CATG	3 cut(s)	90, 145, 210
NlaIV	GGNNCC	1 cut(s)	139
NspI	RCATGY	1 cut(s)	210
PciI	ACATGT	1 cut(s)	206
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PflMI	CCANNNNNTGG	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	60
PleI	GAGTC	2 cut(s)	226, 353
PpsI	GAGTC	2 cut(s)	226, 353
PscI	ACATGT	1 cut(s)	206
Psp1406I	AACGTT	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	1 cut(s)	184
PstI	CTGCAG	1 cut(s)	217
RsaI	GTAC	3 cut(s)	5, 154, 370
RsaNI	GTAC	3 cut(s)	4, 153, 369
RseI	CAYNNNNRTG	1 cut(s)	205
SaqAI	TTAA	2 cut(s)	102, 203
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	2 cut(s)	171, 325
Sau96I	GGNCC	1 cut(s)	184
ScaI	AGTACT	2 cut(s)	154, 370
SchI	GAGTC	2 cut(s)	226, 353
SetI	ASST	7 cut(s)	37, 85, 108, 182, 197, 258, 264
SfcI	CTRYAG	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	205
SpeI	ACTAGT	1 cut(s)	155
SspMI	CTAG	2 cut(s)	156, 188
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	1 cut(s)	258
TatI	WGTACW	3 cut(s)	3, 152, 368
Tru1I	TTAA	2 cut(s)	102, 203
Tru9I	TTAA	2 cut(s)	102, 203
TscAI	CASTG	2 cut(s)	243, 251
TseI	GCWGC	1 cut(s)	58
TspDTI	ATGAA	2 cut(s)	75, 367
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	2 cut(s)	243, 251
Van91I	CCANNNNNTGG	1 cut(s)	134
XceI	RCATGY	1 cut(s)	210
XcmI	CCANNNNNNNNNTGG	1 cut(s)	243
XspI	CTAG	2 cut(s)	156, 188
ZrmI	AGTACT	2 cut(s)	154, 370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.