Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Self-incomp_S1 | PF05938 | 24 - 132 | 2.8e-23 | Plant self-incompatibility protein S1 |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 62 |
| AccII | CGCG | 1 cut(s) | 189 |
| AciI | CCGC | 1 cut(s) | 267 |
| AcsI | RAATTY | 1 cut(s) | 259 |
| AfaI | GTAC | 2 cut(s) | 205, 223 |
| AgsI | TTSAA | 1 cut(s) | 229 |
| AluBI | AGCT | 1 cut(s) | 302 |
| AluI | AGCT | 1 cut(s) | 302 |
| ApoI | RAATTY | 1 cut(s) | 259 |
| AspLEI | GCGC | 1 cut(s) | 191 |
| AspS9I | GGNCC | 1 cut(s) | 143 |
| AvaII | GGWCC | 1 cut(s) | 143 |
| BanI | GGYRCC | 1 cut(s) | 62 |
| BccI | CCATC | 1 cut(s) | 323 |
| BciVI | GTATCC | 1 cut(s) | 67 |
| BfmI | CTRYAG | 1 cut(s) | 244 |
| BfuI | GTATCC | 1 cut(s) | 67 |
| Bme18I | GGWCC | 1 cut(s) | 143 |
| BmgT120I | GGNCC | 1 cut(s) | 143 |
| BmiI | GGNNCC | 1 cut(s) | 64 |
| BsaAI | YACGTR | 1 cut(s) | 175 |
| BsaWI | WCCGGW | 1 cut(s) | 65 |
| Bse1I | ACTGG | 1 cut(s) | 158 |
| BseGI | GGATG | 1 cut(s) | 117 |
| BseNI | ACTGG | 1 cut(s) | 158 |
| Bsh1236I | CGCG | 1 cut(s) | 189 |
| BshNI | GGYRCC | 1 cut(s) | 62 |
| BsiSI | CCGG | 2 cut(s) | 60, 66 |
| BspACI | CCGC | 1 cut(s) | 267 |
| BspFNI | CGCG | 1 cut(s) | 189 |
| BspLI | GGNNCC | 1 cut(s) | 64 |
| BspT107I | GGYRCC | 1 cut(s) | 62 |
| BsrI | ACTGG | 1 cut(s) | 158 |
| BstBAI | YACGTR | 1 cut(s) | 175 |
| BstF5I | GGATG | 1 cut(s) | 117 |
| BstFNI | CGCG | 1 cut(s) | 189 |
| BstHHI | GCGC | 1 cut(s) | 191 |
| BstSFI | CTRYAG | 1 cut(s) | 244 |
| BstUI | CGCG | 1 cut(s) | 189 |
| BsuI | GTATCC | 1 cut(s) | 67 |
| BtsCI | GGATG | 1 cut(s) | 117 |
| BtsIMutI | CAGTG | 1 cut(s) | 165 |
| CfoI | GCGC | 1 cut(s) | 191 |
| Cfr13I | GGNCC | 1 cut(s) | 143 |
| Csp6I | GTAC | 2 cut(s) | 204, 222 |
| CviAII | CATG | 2 cut(s) | 53, 217 |
| CviJI | RGCY | 2 cut(s) | 302, 357 |
| CviKI_1 | RGCY | 2 cut(s) | 302, 357 |
| CviQI | GTAC | 2 cut(s) | 204, 222 |
| DraI | TTTAAA | 2 cut(s) | 274, 342 |
| Eco47I | GGWCC | 1 cut(s) | 143 |
| FaeI | CATG | 2 cut(s) | 56, 220 |
| FatI | CATG | 2 cut(s) | 52, 216 |
| FokI | GGATG | 1 cut(s) | 124 |
| GlaI | GCGC | 1 cut(s) | 190 |
| HapII | CCGG | 2 cut(s) | 60, 66 |
| HhaI | GCGC | 1 cut(s) | 191 |
| Hin1II | CATG | 2 cut(s) | 56, 220 |
| Hin6I | GCGC | 1 cut(s) | 189 |
| HinP1I | GCGC | 1 cut(s) | 189 |
| HinfI | GANTC | 3 cut(s) | 75, 208, 333 |
| HpaII | CCGG | 2 cut(s) | 60, 66 |
| Hpy166II | GTNNAC | 2 cut(s) | 82, 222 |
| Hpy188III | TCNNGA | 1 cut(s) | 79 |
| Hpy8I | GTNNAC | 2 cut(s) | 82, 222 |
| HpyAV | CCTTC | 1 cut(s) | 344 |
| HpyCH4IV | ACGT | 1 cut(s) | 174 |
| HpySE526I | ACGT | 1 cut(s) | 174 |
| Hsp92II | CATG | 2 cut(s) | 56, 220 |
| HspAI | GCGC | 1 cut(s) | 189 |
| LmnI | GCTCC | 1 cut(s) | 299 |
| LpnPI | CCDG | 3 cut(s) | 73, 79, 171 |
| MaeII | ACGT | 1 cut(s) | 174 |
| MboII | GAAGA | 1 cut(s) | 338 |
| MluCI | AATT | 3 cut(s) | 69, 259, 400 |
| MlyI | GAGTC | 1 cut(s) | 202 |
| MnlI | CCTC | 1 cut(s) | 108 |
| MseI | TTAA | 4 cut(s) | 273, 341, 359, 403 |
| MspI | CCGG | 2 cut(s) | 60, 66 |
| MvnI | CGCG | 1 cut(s) | 189 |
| NlaIII | CATG | 2 cut(s) | 56, 220 |
| NlaIV | GGNNCC | 1 cut(s) | 64 |
| PfeI | GAWTC | 2 cut(s) | 75, 333 |
| PleI | GAGTC | 1 cut(s) | 202 |
| PpsI | GAGTC | 1 cut(s) | 202 |
| Ppu21I | YACGTR | 1 cut(s) | 175 |
| PspN4I | GGNNCC | 1 cut(s) | 64 |
| PspPI | GGNCC | 1 cut(s) | 143 |
| RsaI | GTAC | 2 cut(s) | 205, 223 |
| RsaNI | GTAC | 2 cut(s) | 204, 222 |
| SaqAI | TTAA | 4 cut(s) | 273, 341, 359, 403 |
| Sau96I | GGNCC | 1 cut(s) | 143 |
| SchI | GAGTC | 1 cut(s) | 202 |
| SetI | ASST | 5 cut(s) | 119, 145, 177, 304, 355 |
| SfcI | CTRYAG | 1 cut(s) | 244 |
| SinI | GGWCC | 1 cut(s) | 143 |
| Sse9I | AATT | 3 cut(s) | 69, 259, 400 |
| SsiI | CCGC | 1 cut(s) | 267 |
| TaiI | ACGT | 1 cut(s) | 177 |
| TasI | AATT | 3 cut(s) | 69, 259, 400 |
| TatI | WGTACW | 1 cut(s) | 221 |
| TfiI | GAWTC | 2 cut(s) | 75, 333 |
| Tru1I | TTAA | 4 cut(s) | 273, 341, 359, 403 |
| Tru9I | TTAA | 4 cut(s) | 273, 341, 359, 403 |
| TscAI | CASTG | 1 cut(s) | 165 |
| TspDTI | ATGAA | 3 cut(s) | 17, 205, 392 |
| TspRI | CASTG | 1 cut(s) | 165 |
| VpaK11BI | GGWCC | 1 cut(s) | 143 |
| XapI | RAATTY | 1 cut(s) | 259 |