Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000986

Physical Location & Seq

Genomic Coordinates Forward (+)

3255767 .. 3256439

Gene Structure 673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G10460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAAGTTACGTGTGACGATATTTCTGATGGTTGTATGTTTATACACCGAAAATGTGATAGGAGGATCGGTGTTTATCTATAACAACCTGCCCCACGGACACTATTTACAAGTGAAATGCAAATCTGGAGACACCAATCTTGGTTTCCACGTGAGACGGCCCGGTCGGTTTTACAATTACGCTTTCACTGATCATATACTTGGAAAAACGCTTTATTGGTGTCATCTATGGAAAGGTAAAAACTGGGAGGATCATGTGGTGATCGTTGCCTACGAAAGTAGGGATTTGCCTCATCGCGACAATTGGGTGAGGTGGTCGGCCAGGGAATCTGGCATCTATCAAAATGTTAACGGTGAGGAGAGATTCCGTTTCAGGTATAATTGGGATGGTCACGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

132

Amino Acids

15.82

Weight (kDa)

9.22

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	24 - 128	2.4e-23	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11765 AT1G28305 AT1G28306 AT2G06090 AT2G23142 AT2G23148 AT2G24870 AT2G24880 AT3G10460 AT3G26860 AT3G26860 AT3G26870 AT3G26880 AT3G27329 AT3G27331 AT3G27680 AT4G10895 AT4G29037 AT5G04047 AT5G04347 AT5G04347 AT5G04350 AT5G27238 AT5G38435 AT5G38440
fragaria_vesca	FvH4_2g19740 FvH4_3g21860 FvH4_4g05400
malus_domestica	MD05G1181700.v1.1 MD13G1110700.v1.1
prunus_persica	Prupe.1G059400_v2.0.a1 Prupe.1G059600_v2.0.a1 Prupe.1G219300_v2.0.a1 Prupe.1G219600_v2.0.a1 Prupe.1G219700_v2.0.a1 Prupe.8G208500_v2.0.a1 Prupe.8G208600_v2.0.a1 Prupe.8G208800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396541 RchiOBHm_Chr4g0396551
rosa_laevigata	RLG00000009525 RLG00000009526 RLG00000012772 RLG00000013033
rosa_multiflora	Rmu_sc0001781.1_g000005 Rmu_sc0001781.1_g000008 Rmu_sc0002909.1_g000007
rosa_roxburghii	Rroxscaffold_5G00341400
rosa_rugosa	Rorug03G0349100 Rorug05G0091600 Rorug06G0160300
rosa_samantha	Rh4AG069600 Rh4AG069800 Rh4BG067300 Rh4BG067400 Rh4CG075200 Rh4CG075300 Rh4DG064800 Rh5BG181300 Rh5DG183000
rosa_wichuraiana	Rw4G005590 Rw5G016720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	162
Acc36I	ACCTGC	1 cut(s)	96
AccII	CGCG	1 cut(s)	297
AclWI	GGATC	2 cut(s)	73, 258
AcoI	YGGCCR	1 cut(s)	318
AcvI	CACGTG	1 cut(s)	151
AflIII	ACRYGT	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	320
AjuI	GAANNNNNNNTTGG	2 cut(s)	128, 160
Alw26I	GTCTC	2 cut(s)	123, 148
AlwI	GGATC	2 cut(s)	73, 258
AoxI	GGCC	2 cut(s)	158, 318
AspS9I	GGNCC	1 cut(s)	159
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	3 cut(s)	271, 319, 365
BbrPI	CACGTG	1 cut(s)	151
BccI	CCATC	2 cut(s)	22, 380
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	322
BclI	TGATCA	1 cut(s)	190
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	2 cut(s)	123, 148
BfuAI	ACCTGC	1 cut(s)	96
Bme1390I	CCNGG	2 cut(s)	162, 322
BmgT120I	GGNCC	1 cut(s)	159
BmrFI	CCNGG	2 cut(s)	162, 322
BmrI	ACTGGG	1 cut(s)	253
BmsI	GCATC	1 cut(s)	342
BmuI	ACTGGG	1 cut(s)	253
BpmI	CTGGAG	1 cut(s)	147
BpuMI	CCSGG	1 cut(s)	162
BsaAI	YACGTR	2 cut(s)	11, 151
BsaJI	CCNNGG	2 cut(s)	94, 321
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bse1I	ACTGG	1 cut(s)	248
BseBI	CCWGG	1 cut(s)	322
BseDI	CCNNGG	2 cut(s)	94, 321
BseGI	GGATG	1 cut(s)	391
BseNI	ACTGG	1 cut(s)	248
BseRI	GAGGAG	1 cut(s)	371
Bsh1236I	CGCG	1 cut(s)	297
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	2 cut(s)	160, 320
BsiEI	CGRYCG	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	162
BsmAI	GTCTC	2 cut(s)	123, 148
BsmBI	CGTCTC	1 cut(s)	148
BsnI	GGCC	2 cut(s)	160, 320
Bsp143I	GATC	4 cut(s)	65, 190, 250, 261
Bsp68I	TCGCGA	1 cut(s)	297
BspANI	GGCC	2 cut(s)	160, 320
BspFNI	CGCG	1 cut(s)	297
BspMI	ACCTGC	1 cut(s)	96
BspPI	GGATC	2 cut(s)	73, 258
BsrI	ACTGG	1 cut(s)	248
BssECI	CCNNGG	2 cut(s)	94, 321
BssMI	GATC	4 cut(s)	65, 190, 250, 261
Bst2UI	CCWGG	1 cut(s)	322
Bst4CI	ACNGT	1 cut(s)	353
BstBAI	YACGTR	2 cut(s)	11, 151
BstDSI	CCRYGG	1 cut(s)	94
BstF5I	GGATG	1 cut(s)	391
BstFNI	CGCG	1 cut(s)	297
BstKTI	GATC	4 cut(s)	68, 193, 253, 264
BstMAI	GTCTC	2 cut(s)	123, 148
BstMBI	GATC	4 cut(s)	65, 190, 250, 261
BstMCI	CGRYCG	1 cut(s)	166
BstNI	CCWGG	1 cut(s)	322
BstSCI	CCNGG	2 cut(s)	160, 320
BstUI	CGCG	1 cut(s)	297
BsuRI	GGCC	2 cut(s)	160, 320
BtgI	CCRYGG	1 cut(s)	94
BtgZI	GCGATG	1 cut(s)	278
BtsCI	GGATG	1 cut(s)	391
BtsIMutI	CAGTG	1 cut(s)	186
BtuMI	TCGCGA	1 cut(s)	297
BveI	ACCTGC	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	159
CviAII	CATG	1 cut(s)	254
CviJI	RGCY	2 cut(s)	160, 320
CviKI_1	RGCY	2 cut(s)	160, 320
DpnI	GATC	4 cut(s)	67, 192, 252, 263
DpnII	GATC	4 cut(s)	65, 190, 250, 261
DrdI	GACNNNNNNGTC	1 cut(s)	162
DseDI	GACNNNNNNGTC	1 cut(s)	162
EaeI	YGGCCR	1 cut(s)	318
Eco72I	CACGTG	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	320
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	1 cut(s)	257
FaiI	YATR	8 cut(s)	37, 43, 81, 195, 197, 229, 255, 378
FatI	CATG	1 cut(s)	253
FbaI	TGATCA	1 cut(s)	190
GsuI	CTGGAG	1 cut(s)	147
HaeIII	GGCC	2 cut(s)	160, 320
HapII	CCGG	1 cut(s)	162
Hin1II	CATG	1 cut(s)	257
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HinfI	GANTC	2 cut(s)	326, 363
HpaI	GTTAAC	1 cut(s)	349
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	3 cut(s)	271, 319, 365
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	2 cut(s)	126, 296
Hpy8I	GTNNAC	1 cut(s)	349
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4IV	ACGT	3 cut(s)	10, 150, 393
HpyCH4V	TGCA	1 cut(s)	120
HpySE526I	ACGT	3 cut(s)	10, 150, 393
Hsp92II	CATG	1 cut(s)	257
Ksp22I	TGATCA	1 cut(s)	190
KspAI	GTTAAC	1 cut(s)	349
Kzo9I	GATC	4 cut(s)	65, 190, 250, 261
LpnPI	CCDG	8 cut(s)	101, 111, 175, 229, 307, 315, 334, 358
LweI	GCATC	1 cut(s)	342
MaeII	ACGT	3 cut(s)	10, 150, 393
MaeIII	GTNAC	3 cut(s)	6, 13, 389
MalI	GATC	4 cut(s)	67, 192, 252, 263
MboI	GATC	4 cut(s)	65, 190, 250, 261
MfeI	CAATTG	1 cut(s)	301
MluCI	AATT	3 cut(s)	175, 301, 379
MnlI	CCTC	5 cut(s)	56, 241, 300, 303, 349
MseI	TTAA	2 cut(s)	348, 397
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	2 cut(s)	162, 322
MunI	CAATTG	1 cut(s)	301
MvaI	CCWGG	1 cut(s)	322
MvnI	CGCG	1 cut(s)	297
NciI	CCSGG	1 cut(s)	162
NdeII	GATC	4 cut(s)	65, 190, 250, 261
NlaIII	CATG	1 cut(s)	257
NmuCI	GTSAC	2 cut(s)	13, 389
NruI	TCGCGA	1 cut(s)	297
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	326, 363
PmaCI	CACGTG	1 cut(s)	151
PmlI	CACGTG	1 cut(s)	151
Ppu21I	YACGTR	2 cut(s)	11, 151
Psp6I	CCWGG	1 cut(s)	320
PspCI	CACGTG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	320
PspPI	GGNCC	1 cut(s)	159
RruI	TCGCGA	1 cut(s)	297
SaqAI	TTAA	2 cut(s)	348, 397
Sau3AI	GATC	4 cut(s)	65, 190, 250, 261
Sau96I	GGNCC	1 cut(s)	159
ScrFI	CCNGG	2 cut(s)	162, 322
SetI	ASST	7 cut(s)	13, 90, 153, 238, 314, 377, 396
SfaNI	GCATC	1 cut(s)	342
Sse9I	AATT	3 cut(s)	175, 301, 379
StyD4I	CCNGG	2 cut(s)	160, 320
TaaI	ACNGT	1 cut(s)	353
TaiI	ACGT	3 cut(s)	13, 153, 396
TasI	AATT	3 cut(s)	175, 301, 379
TfiI	GAWTC	2 cut(s)	326, 363
Tru1I	TTAA	2 cut(s)	348, 397
Tru9I	TTAA	2 cut(s)	348, 397
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	2 cut(s)	13, 389
Tsp45I	GTSAC	2 cut(s)	13, 389
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	111, 356
TspRI	CASTG	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.