Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Self-incomp_S1 | PF05938 | 16 - 112 | 7.1e-23 | Plant self-incompatibility protein S1 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 187 |
| AciI | CCGC | 3 cut(s) | 39, 42, 91 |
| AclWI | GGATC | 2 cut(s) | 59, 317 |
| AfaI | GTAC | 1 cut(s) | 199 |
| AflIII | ACRYGT | 1 cut(s) | 185 |
| AgsI | TTSAA | 1 cut(s) | 250 |
| AluBI | AGCT | 2 cut(s) | 253, 329 |
| AluI | AGCT | 2 cut(s) | 253, 329 |
| Alw26I | GTCTC | 1 cut(s) | 199 |
| AlwI | GGATC | 2 cut(s) | 59, 317 |
| AspS9I | GGNCC | 2 cut(s) | 119, 212 |
| AsuHPI | GGTGA | 1 cut(s) | 16 |
| AvaII | GGWCC | 2 cut(s) | 119, 212 |
| BcoDI | GTCTC | 1 cut(s) | 199 |
| BfaI | CTAG | 1 cut(s) | 23 |
| BisI | GCNGC | 1 cut(s) | 40 |
| BlsI | GCNGC | 1 cut(s) | 41 |
| Bme18I | GGWCC | 2 cut(s) | 119, 212 |
| BmgT120I | GGNCC | 2 cut(s) | 119, 212 |
| BmsI | GCATC | 2 cut(s) | 78, 348 |
| BseGI | GGATG | 2 cut(s) | 93, 363 |
| Bsh1236I | CGCG | 1 cut(s) | 187 |
| BsmAI | GTCTC | 1 cut(s) | 199 |
| BsmI | GAATGC | 1 cut(s) | 245 |
| Bsp143I | GATC | 2 cut(s) | 51, 309 |
| BspACI | CCGC | 3 cut(s) | 39, 42, 91 |
| BspFNI | CGCG | 1 cut(s) | 187 |
| BspPI | GGATC | 2 cut(s) | 59, 317 |
| BssMI | GATC | 2 cut(s) | 51, 309 |
| BstC8I | GCNNGC | 2 cut(s) | 20, 331 |
| BstF5I | GGATG | 2 cut(s) | 93, 363 |
| BstFNI | CGCG | 1 cut(s) | 187 |
| BstKTI | GATC | 2 cut(s) | 54, 312 |
| BstMAI | GTCTC | 1 cut(s) | 199 |
| BstMBI | GATC | 2 cut(s) | 51, 309 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 184 |
| BstNSI | RCATGY | 1 cut(s) | 22 |
| BstUI | CGCG | 1 cut(s) | 187 |
| BstX2I | RGATCY | 2 cut(s) | 51, 309 |
| BstYI | RGATCY | 2 cut(s) | 51, 309 |
| BtsCI | GGATG | 2 cut(s) | 93, 363 |
| Cac8I | GCNNGC | 2 cut(s) | 20, 331 |
| Cfr13I | GGNCC | 2 cut(s) | 119, 212 |
| Csp6I | GTAC | 1 cut(s) | 198 |
| CviAII | CATG | 2 cut(s) | 19, 29 |
| CviJI | RGCY | 2 cut(s) | 253, 329 |
| CviKI_1 | RGCY | 2 cut(s) | 253, 329 |
| CviQI | GTAC | 1 cut(s) | 198 |
| DpnI | GATC | 2 cut(s) | 53, 311 |
| DpnII | GATC | 2 cut(s) | 51, 309 |
| DraI | TTTAAA | 2 cut(s) | 318, 345 |
| EciI | GGCGGA | 1 cut(s) | 57 |
| Eco47I | GGWCC | 2 cut(s) | 119, 212 |
| EcoO109I | RGGNCCY | 1 cut(s) | 212 |
| EcoT22I | ATGCAT | 1 cut(s) | 363 |
| FaeI | CATG | 2 cut(s) | 22, 32 |
| FaiI | YATR | 9 cut(s) | 20, 30, 150, 180, 194, 263, 283, 363, 372 |
| FatI | CATG | 2 cut(s) | 18, 28 |
| Fnu4HI | GCNGC | 1 cut(s) | 40 |
| FokI | GGATG | 2 cut(s) | 100, 370 |
| Fsp4HI | GCNGC | 1 cut(s) | 40 |
| FspBI | CTAG | 1 cut(s) | 23 |
| GluI | GCNGC | 1 cut(s) | 40 |
| Hin1II | CATG | 2 cut(s) | 22, 32 |
| HindIII | AAGCTT | 1 cut(s) | 251 |
| HinfI | GANTC | 1 cut(s) | 45 |
| HphI | GGTGA | 1 cut(s) | 16 |
| Hpy166II | GTNNAC | 1 cut(s) | 198 |
| Hpy188I | TCNGA | 2 cut(s) | 140, 234 |
| Hpy188III | TCNNGA | 2 cut(s) | 49, 55 |
| Hpy8I | GTNNAC | 1 cut(s) | 198 |
| HpyAV | CCTTC | 1 cut(s) | 266 |
| HpyCH4IV | ACGT | 1 cut(s) | 111 |
| HpyCH4V | TGCA | 2 cut(s) | 18, 361 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 184 |
| HpySE526I | ACGT | 1 cut(s) | 111 |
| Hsp92II | CATG | 2 cut(s) | 22, 32 |
| Kzo9I | GATC | 2 cut(s) | 51, 309 |
| LpnPI | CCDG | 3 cut(s) | 21, 34, 315 |
| LweI | GCATC | 2 cut(s) | 78, 348 |
| MaeI | CTAG | 1 cut(s) | 23 |
| MaeII | ACGT | 1 cut(s) | 111 |
| MalI | GATC | 2 cut(s) | 53, 311 |
| MboI | GATC | 2 cut(s) | 51, 309 |
| MflI | RGATCY | 2 cut(s) | 51, 309 |
| MluCI | AATT | 1 cut(s) | 351 |
| MluI | ACGCGT | 1 cut(s) | 185 |
| MnlI | CCTC | 1 cut(s) | 269 |
| Mph1103I | ATGCAT | 1 cut(s) | 363 |
| MseI | TTAA | 4 cut(s) | 168, 317, 344, 385 |
| MslI | CAYNNNNRTG | 1 cut(s) | 17 |
| Mva1269I | GAATGC | 1 cut(s) | 245 |
| MvnI | CGCG | 1 cut(s) | 187 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 184 |
| NdeII | GATC | 2 cut(s) | 51, 309 |
| NlaIII | CATG | 2 cut(s) | 22, 32 |
| NsiI | ATGCAT | 1 cut(s) | 363 |
| NspI | RCATGY | 1 cut(s) | 22 |
| PaeI | GCATGC | 1 cut(s) | 22 |
| PctI | GAATGC | 1 cut(s) | 245 |
| PfeI | GAWTC | 1 cut(s) | 45 |
| PflFI | GACNNNGTC | 1 cut(s) | 210 |
| PkrI | GCNGC | 1 cut(s) | 41 |
| PpuMI | RGGWCCY | 1 cut(s) | 212 |
| Psp5II | RGGWCCY | 1 cut(s) | 212 |
| PspPI | GGNCC | 2 cut(s) | 119, 212 |
| PspPPI | RGGWCCY | 1 cut(s) | 212 |
| PsuI | RGATCY | 2 cut(s) | 51, 309 |
| PsyI | GACNNNGTC | 1 cut(s) | 210 |
| RsaI | GTAC | 1 cut(s) | 199 |
| RsaNI | GTAC | 1 cut(s) | 198 |
| RseI | CAYNNNNRTG | 1 cut(s) | 17 |
| SaqAI | TTAA | 4 cut(s) | 168, 317, 344, 385 |
| SatI | GCNGC | 1 cut(s) | 40 |
| Sau3AI | GATC | 2 cut(s) | 51, 309 |
| Sau96I | GGNCC | 2 cut(s) | 119, 212 |
| SetI | ASST | 6 cut(s) | 114, 121, 214, 255, 280, 331 |
| SfaNI | GCATC | 2 cut(s) | 78, 348 |
| SinI | GGWCC | 2 cut(s) | 119, 212 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 17 |
| SphI | GCATGC | 1 cut(s) | 22 |
| Sse9I | AATT | 1 cut(s) | 351 |
| SsiI | CCGC | 3 cut(s) | 39, 42, 91 |
| SspMI | CTAG | 1 cut(s) | 23 |
| TaiI | ACGT | 1 cut(s) | 114 |
| TaqI | TCGA | 1 cut(s) | 56 |
| TasI | AATT | 1 cut(s) | 351 |
| TatI | WGTACW | 1 cut(s) | 197 |
| TauI | GCSGC | 1 cut(s) | 42 |
| TfiI | GAWTC | 1 cut(s) | 45 |
| Tru1I | TTAA | 4 cut(s) | 168, 317, 344, 385 |
| Tru9I | TTAA | 4 cut(s) | 168, 317, 344, 385 |
| TspDTI | ATGAA | 2 cut(s) | 165, 285 |
| Tth111I | GACNNNGTC | 1 cut(s) | 210 |
| VpaK11BI | GGWCC | 2 cut(s) | 119, 212 |
| XceI | RCATGY | 1 cut(s) | 22 |
| XspI | CTAG | 1 cut(s) | 23 |
| Zsp2I | ATGCAT | 1 cut(s) | 363 |