AT1G28306

carboxyl

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
9906882 .. 9907725
844 bp
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UTR
Exon/CDS
Intron
AT1G28306.1

Sequence Viewer

Length: 414 bp
ATGAAATATCTCCTAGTGATTCTATTTGTTTATGGCCTATGCATAATTGTTGTAAATGGTAGCAGAACAACAAACAAGATCAATATCTGGAACGATCTCGATCCCAATCACAAGCACACAACCCTCTTTGTGCATTGTAAATCTAAAACGATCGACAAAGGAAGACAAGAACTTCCGTGGGGAAAACTATATCAATTTCCTGTTAAGGAAACATGGTTGAGGAATACACTTTTTTGGTGTACTTTAAGACATGGGCCTGGTTATACGATTGGCCAACAATTTGATGCGTATAAATATACGGGTGTGCCTCAAGGAAGCGATTATGATTGGATAGCTAGAGAAGATGGAATATATTTTAGGGTAAATCGAGGTACGATCCGTAAAGTGCATAACTGGAAGCCAATGCCACCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

137

Amino Acids

16.18

Weight (kDa)

9.62

Isoelectric Point (pI)

31.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 27 - 132 1.1e-21 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 95, 370
AcoI YGGCCR 1 cut(s) 271
AfaI GTAC 2 cut(s) 241, 373
AjnI CCWGG 1 cut(s) 256
AluBI AGCT 1 cut(s) 335
AluI AGCT 1 cut(s) 335
AlwI GGATC 2 cut(s) 95, 370
AoxI GGCC 3 cut(s) 34, 254, 271
AspS9I GGNCC 1 cut(s) 254
BalI TGGCCA 1 cut(s) 273
BbsI GAAGAC 1 cut(s) 169
BccI CCATC 1 cut(s) 338
BciT130I CCWGG 1 cut(s) 258
BfaI CTAG 2 cut(s) 14, 336
Bme1390I CCNGG 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 254
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 169
BpuEI CTTGAG 1 cut(s) 294
BsaBI GATNNNNATC 3 cut(s) 83, 99, 105
BsaJI CCNNGG 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 398
Bse8I GATNNNNATC 3 cut(s) 83, 99, 105
BseBI CCWGG 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 176
BseJI GATNNNNATC 3 cut(s) 83, 99, 105
BseNI ACTGG 1 cut(s) 398
Bsh1285I CGRYCG 1 cut(s) 153
BshFI GGCC 3 cut(s) 36, 256, 273
BsiEI CGRYCG 1 cut(s) 153
BsnI GGCC 3 cut(s) 36, 256, 273
Bsp143I GATC 5 cut(s) 78, 94, 100, 150, 375
BspANI GGCC 3 cut(s) 36, 256, 273
BspPI GGATC 2 cut(s) 95, 370
BsrI ACTGG 1 cut(s) 398
BssECI CCNNGG 1 cut(s) 176
BssMI GATC 5 cut(s) 78, 94, 100, 150, 375
Bst2UI CCWGG 1 cut(s) 258
Bst4CI ACNGT 1 cut(s) 411
BstDSI CCRYGG 1 cut(s) 176
BstKTI GATC 5 cut(s) 81, 97, 103, 153, 378
BstMBI GATC 5 cut(s) 78, 94, 100, 150, 375
BstMCI CGRYCG 1 cut(s) 153
BstNI CCWGG 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 256
BstV2I GAAGAC 1 cut(s) 169
BsuRI GGCC 3 cut(s) 36, 256, 273
BtgI CCRYGG 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 254
Csp6I GTAC 2 cut(s) 240, 372
CviAII CATG 2 cut(s) 213, 251
CviJI RGCY 5 cut(s) 36, 256, 273, 335, 400
CviKI_1 RGCY 5 cut(s) 36, 256, 273, 335, 400
CviQI GTAC 2 cut(s) 240, 372
DpnI GATC 5 cut(s) 80, 96, 102, 152, 377
DpnII GATC 5 cut(s) 78, 94, 100, 150, 375
EaeI YGGCCR 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 256
EcoT22I ATGCAT 1 cut(s) 44
FaeI CATG 2 cut(s) 216, 254
FatI CATG 2 cut(s) 212, 250
FspBI CTAG 2 cut(s) 14, 336
HaeIII GGCC 3 cut(s) 36, 256, 273
Hin1II CATG 2 cut(s) 216, 254
HinfI GANTC 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 240
Hpy188III TCNNGA 2 cut(s) 88, 98
Hpy8I GTNNAC 1 cut(s) 240
HpyCH4III ACNGT 1 cut(s) 411
HpyCH4V TGCA 3 cut(s) 42, 133, 388
Hsp92II CATG 2 cut(s) 216, 254
Kzo9I GATC 5 cut(s) 78, 94, 100, 150, 375
LpnPI CCDG 5 cut(s) 73, 213, 243, 270, 379
LweI GCATC 1 cut(s) 274
MaeI CTAG 2 cut(s) 14, 336
MalI GATC 5 cut(s) 80, 96, 102, 152, 377
MboI GATC 5 cut(s) 78, 94, 100, 150, 375
MboII GAAGA 2 cut(s) 174, 353
MlsI TGGCCA 1 cut(s) 273
MluCI AATT 3 cut(s) 45, 194, 278
MluNI TGGCCA 1 cut(s) 273
MnlI CCTC 4 cut(s) 134, 213, 318, 362
Mox20I TGGCCA 1 cut(s) 273
Mph1103I ATGCAT 1 cut(s) 44
MscI TGGCCA 1 cut(s) 273
MseI TTAA 2 cut(s) 204, 245
Msp20I TGGCCA 1 cut(s) 273
MspR9I CCNGG 1 cut(s) 258
MvaI CCWGG 1 cut(s) 258
NdeII GATC 5 cut(s) 78, 94, 100, 150, 375
NlaIII CATG 2 cut(s) 216, 254
NsiI ATGCAT 1 cut(s) 44
PfeI GAWTC 1 cut(s) 19
Ple19I CGATCG 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 256
PspGI CCWGG 1 cut(s) 256
PspPI GGNCC 1 cut(s) 254
PvuI CGATCG 1 cut(s) 153
RsaI GTAC 2 cut(s) 241, 373
RsaNI GTAC 2 cut(s) 240, 372
SaqAI TTAA 2 cut(s) 204, 245
Sau3AI GATC 5 cut(s) 78, 94, 100, 150, 375
Sau96I GGNCC 1 cut(s) 254
ScrFI CCNGG 1 cut(s) 258
SetI ASST 2 cut(s) 337, 373
SfaNI GCATC 1 cut(s) 274
SmlI CTYRAG 1 cut(s) 309
SmoI CTYRAG 1 cut(s) 309
Sse9I AATT 3 cut(s) 45, 194, 278
SspMI CTAG 2 cut(s) 14, 336
StyD4I CCNGG 1 cut(s) 256
TaaI ACNGT 1 cut(s) 411
TaqI TCGA 3 cut(s) 99, 153, 367
TasI AATT 3 cut(s) 45, 194, 278
TatI WGTACW 1 cut(s) 239
TfiI GAWTC 1 cut(s) 19
Tru1I TTAA 2 cut(s) 204, 245
Tru9I TTAA 2 cut(s) 204, 245
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 165, 368
XspI CTAG 2 cut(s) 14, 336
Zsp2I ATGCAT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.