Rw4G005590

Plant self-incompatibility protein S1

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
11305498 .. 11305896
399 bp
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UTR
Exon/CDS
Intron
Rw4G005590.1

Sequence Viewer

Length: 399 bp
ATGTCTTTCACTGCCAACTGTTCTTGTGTGATCATCACCTTGGCCCTAGCAACCTTGACATTAACATTTTCAGAAGGGTACAAATCGTACGATGTTCACATCATCAATCGCTTTTGCAACAACGATAAGCCATTAACTGTTCATTGCAAATCTGGAGACGATGATCTTGGTAACCACACCCTATGGAGAGGCCAAGATTACCACTGGCAATTTAACGGAAACTTTTGGGGTACAACTCTCTTCCACTGCAATATGAAATGGGATTCACAAGAGAGAGACATCATCGTTTTTAGTATTGCTGATCAGAAACCCCCTGAGTGCATGGAAACAAAGGATTGCTTTTGGTTCGTGAATGAGGATGGTTTCTATGTTGGTAATAAAAAGTTCGATTGGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

132

Amino Acids

15.46

Weight (kDa)

5.35

Isoelectric Point (pI)

36.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 32 - 127 3.8e-27 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 80, 89, 232
Alw26I GTCTC 2 cut(s) 150, 270
AoxI GGCC 2 cut(s) 42, 190
AspS9I GGNCC 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 28
BccI CCATC 1 cut(s) 353
BclI TGATCA 2 cut(s) 30, 301
BcoDI GTCTC 2 cut(s) 150, 270
BfaI CTAG 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 43
BpmI CTGGAG 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 39
Bse1I ACTGG 1 cut(s) 209
Bse3DI GCAATG 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 364
BseMI GCAATG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 1 cut(s) 209
BshFI GGCC 2 cut(s) 44, 192
BsiWI CGTACG 1 cut(s) 87
BsmAI GTCTC 2 cut(s) 150, 270
BsmBI CGTCTC 1 cut(s) 150
BsnI GGCC 2 cut(s) 44, 192
Bsp143I GATC 3 cut(s) 30, 163, 301
BspANI GGCC 2 cut(s) 44, 192
BspCNI CTCAG 1 cut(s) 307
BsrDI GCAATG 1 cut(s) 142
BsrI ACTGG 1 cut(s) 209
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 3 cut(s) 30, 163, 301
BssT1I CCWWGG 1 cut(s) 39
Bst4CI ACNGT 2 cut(s) 20, 139
Bst6I CTCTTC 1 cut(s) 245
BstDEI CTNAG 1 cut(s) 315
BstEII GGTNACC 1 cut(s) 170
BstF5I GGATG 1 cut(s) 364
BstKTI GATC 3 cut(s) 33, 166, 304
BstMAI GTCTC 2 cut(s) 150, 270
BstMBI GATC 3 cut(s) 30, 163, 301
BstPI GGTNACC 1 cut(s) 170
BsuRI GGCC 2 cut(s) 44, 192
BtsCI GGATG 1 cut(s) 364
BtsI GCAGTG 2 cut(s) 9, 244
BtsIMutI CAGTG 3 cut(s) 9, 202, 244
Cfr13I GGNCC 1 cut(s) 43
Csp6I GTAC 3 cut(s) 79, 88, 231
CviAII CATG 1 cut(s) 322
CviJI RGCY 3 cut(s) 44, 130, 192
CviKI_1 RGCY 3 cut(s) 44, 130, 192
CviQI GTAC 3 cut(s) 79, 88, 231
DdeI CTNAG 1 cut(s) 315
DpnI GATC 3 cut(s) 32, 165, 303
DpnII GATC 3 cut(s) 30, 163, 301
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
Eco130I CCWWGG 1 cut(s) 39
Eco91I GGTNACC 1 cut(s) 170
EcoO65I GGTNACC 1 cut(s) 170
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
Esp3I CGTCTC 1 cut(s) 150
FaeI CATG 1 cut(s) 325
FaiI YATR 4 cut(s) 184, 254, 323, 369
FalI AAGNNNNNCTT 2 cut(s) 323, 355
FatI CATG 1 cut(s) 321
FbaI TGATCA 2 cut(s) 30, 301
FokI GGATG 1 cut(s) 371
FspBI CTAG 1 cut(s) 47
GsuI CTGGAG 1 cut(s) 174
HaeIII GGCC 2 cut(s) 44, 192
Hin1II CATG 1 cut(s) 325
HinfI GANTC 1 cut(s) 263
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 2 cut(s) 73, 306
Hpy188III TCNNGA 2 cut(s) 153, 349
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 2 cut(s) 20, 139
HpyCH4V TGCA 4 cut(s) 117, 147, 249, 321
HpyF3I CTNAG 1 cut(s) 315
Hsp92II CATG 1 cut(s) 325
Ksp22I TGATCA 2 cut(s) 30, 301
Kzo9I GATC 3 cut(s) 30, 163, 301
LpnPI CCDG 3 cut(s) 138, 190, 327
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 170
MalI GATC 3 cut(s) 32, 165, 303
MboI GATC 3 cut(s) 30, 163, 301
MboII GAAGA 1 cut(s) 232
MluCI AATT 1 cut(s) 209
MnlI CCTC 2 cut(s) 182, 349
MseI TTAA 3 cut(s) 62, 134, 213
NdeII GATC 3 cut(s) 30, 163, 301
NlaIII CATG 1 cut(s) 325
PfeI GAWTC 1 cut(s) 263
Pfl23II CGTACG 1 cut(s) 87
PspEI GGTNACC 1 cut(s) 170
PspLI CGTACG 1 cut(s) 87
PspPI GGNCC 1 cut(s) 43
RsaI GTAC 3 cut(s) 80, 89, 232
RsaNI GTAC 3 cut(s) 79, 88, 231
SaqAI TTAA 3 cut(s) 62, 134, 213
Sau3AI GATC 3 cut(s) 30, 163, 301
Sau96I GGNCC 1 cut(s) 43
SetI ASST 2 cut(s) 41, 56
Sse9I AATT 1 cut(s) 209
SspMI CTAG 1 cut(s) 47
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 2 cut(s) 20, 139
TaqI TCGA 1 cut(s) 387
TasI AATT 1 cut(s) 209
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 3 cut(s) 62, 134, 213
Tru9I TTAA 3 cut(s) 62, 134, 213
TscAI CASTG 3 cut(s) 16, 209, 251
TspDTI ATGAA 2 cut(s) 131, 269
TspGWI ACGGA 1 cut(s) 231
TspRI CASTG 3 cut(s) 16, 209, 251
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.