Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000986

Physical Location & Seq

Genomic Coordinates Forward (+)

14932659 .. 14933487

Gene Structure 829 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g21860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGACGGGATCAAAGACAACTCTCTTGATTCTTGTTGGATTCATACTATGTGTTGCGACGAGGGCGAGGTCAGAATCTGTTGATCTGACCCCAGAACTTGCTCCGGCTCCAGGAGAGTCTATTGATCTGACCCCAGAACTTGCTCCGGCTCCGGCACCAGAAGGAGCTCATGATATTTGGATACCTGAACCTTTTAAAAAGTTTTTTGTACGCATAATAAACGAAGTGGGACTCCATAAACTTGATGTTACTTGCAAGTCCAAAAACGATGTTCTTGTTCGTACTCTTCCTCCTGGTAACCACTTCGAATTCGGGTTTAGAGTCAATTTCCCGGGTAGCACACTTTTCCATTGTGACTTGAGGTATTTGAATCACCATGCTGGTTTTGTTGCATTTAAAACCGATTTAGACTTTCTTCCACATTGTAGTGGTGTTCATTGCATATGGCAAGCGCGGCAAGATGGCATATACTTAATGGATTCCGATCAAGTTTACCAGAAGAGGTTAGGGTGGGACGGCAAAACCACGGCCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

179

Amino Acids

19.83

Weight (kDa)

6.22

Isoelectric Point (pI)

34.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	70 - 171	5.5e-21	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11765 AT1G28305 AT1G28306 AT2G06090 AT2G23142 AT2G23148 AT2G24870 AT2G24880 AT3G10460 AT3G26860 AT3G26860 AT3G26870 AT3G26880 AT3G27329 AT3G27331 AT3G27680 AT4G10895 AT4G29037 AT5G04047 AT5G04347 AT5G04347 AT5G04350 AT5G27238 AT5G38435 AT5G38440
fragaria_vesca	FvH4_2g19740 FvH4_3g21860 FvH4_4g05400
malus_domestica	MD05G1181700.v1.1 MD13G1110700.v1.1
prunus_persica	Prupe.1G059400_v2.0.a1 Prupe.1G059600_v2.0.a1 Prupe.1G219300_v2.0.a1 Prupe.1G219600_v2.0.a1 Prupe.1G219700_v2.0.a1 Prupe.8G208500_v2.0.a1 Prupe.8G208600_v2.0.a1 Prupe.8G208800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396541 RchiOBHm_Chr4g0396551
rosa_laevigata	RLG00000009525 RLG00000009526 RLG00000012772 RLG00000013033
rosa_multiflora	Rmu_sc0001781.1_g000005 Rmu_sc0001781.1_g000008 Rmu_sc0002909.1_g000007
rosa_roxburghii	Rroxscaffold_5G00341400
rosa_rugosa	Rorug03G0349100 Rorug05G0091600 Rorug06G0160300
rosa_samantha	Rh4AG069600 Rh4AG069800 Rh4BG067300 Rh4BG067400 Rh4CG075200 Rh4CG075300 Rh4DG064800 Rh5BG181300 Rh5DG183000
rosa_wichuraiana	Rw4G005590 Rw5G016720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	154
AccII	CGCG	1 cut(s)	454
AciI	CCGC	1 cut(s)	454
AclWI	GGATC	1 cut(s)	16
AcoI	YGGCCR	1 cut(s)	528
AcsI	RAATTY	1 cut(s)	308
AfaI	GTAC	2 cut(s)	210, 283
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgsI	TTSAA	1 cut(s)	370
AjnI	CCWGG	2 cut(s)	109, 292
AleI	CACNNNNGTG	1 cut(s)	530
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
Alw21I	GWGCWC	1 cut(s)	169
AlwI	GGATC	1 cut(s)	16
AlwNI	CAGNNNCTG	1 cut(s)	77
Ama87I	CYCGRG	1 cut(s)	331
AoxI	GGCC	1 cut(s)	528
ApoI	RAATTY	1 cut(s)	308
AspLEI	GCGC	1 cut(s)	454
AsuC2I	CCSGG	2 cut(s)	332, 333
AsuHPI	GGTGA	1 cut(s)	365
AsuII	TTCGAA	1 cut(s)	306
AvaI	CYCGRG	1 cut(s)	331
BanI	GGYRCC	1 cut(s)	154
BanII	GRGCYC	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	169
BccI	CCATC	1 cut(s)	455
BceAI	ACGGC	2 cut(s)	515, 532
BciT130I	CCWGG	2 cut(s)	111, 294
BciVI	GTATCC	1 cut(s)	174
BcnI	CCSGG	2 cut(s)	332, 333
BfuI	GTATCC	1 cut(s)	174
BisI	GCNGC	1 cut(s)	455
BlsI	GCNGC	1 cut(s)	456
Bme1390I	CCNGG	4 cut(s)	111, 294, 332, 333
BmeT110I	CYCGRG	1 cut(s)	331
BmiI	GGNNCC	3 cut(s)	108, 150, 156
BmrFI	CCNGG	4 cut(s)	111, 294, 332, 333
BpmI	CTGGAG	1 cut(s)	93
Bpu14I	TTCGAA	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	379
BpuMI	CCSGG	2 cut(s)	332, 333
BsaBI	GATNNNNATC	1 cut(s)	483
BsaJI	CCNNGG	2 cut(s)	331, 525
BsaXI	ACNNNNNCTCC	2 cut(s)	274, 304
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse3DI	GCAATG	1 cut(s)	436
Bse8I	GATNNNNATC	1 cut(s)	483
BseBI	CCWGG	2 cut(s)	111, 294
BseDI	CCNNGG	2 cut(s)	331, 525
BseJI	GATNNNNATC	1 cut(s)	483
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMI	GCAATG	1 cut(s)	436
BseX3I	CGGCCG	1 cut(s)	528
Bsh1236I	CGCG	1 cut(s)	454
Bsh1285I	CGRYCG	1 cut(s)	531
BshFI	GGCC	1 cut(s)	530
BshNI	GGYRCC	1 cut(s)	154
BsiEI	CGRYCG	1 cut(s)	531
BsiHKAI	GWGCWC	1 cut(s)	169
BsiHKCI	CYCGRG	1 cut(s)	331
BsiSI	CCGG	4 cut(s)	104, 146, 152, 332
BslFI	GGGAC	2 cut(s)	243, 527
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmFI	GGGAC	2 cut(s)	243, 527
BsnI	GGCC	1 cut(s)	530
BsoBI	CYCGRG	1 cut(s)	331
Bsp119I	TTCGAA	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	4 cut(s)	8, 82, 124, 484
BspACI	CCGC	1 cut(s)	454
BspANI	GGCC	1 cut(s)	530
BspFNI	CGCG	1 cut(s)	454
BspHI	TCATGA	1 cut(s)	169
BspLI	GGNNCC	3 cut(s)	108, 150, 156
BspPI	GGATC	1 cut(s)	16
BspT104I	TTCGAA	1 cut(s)	306
BspT107I	GGYRCC	1 cut(s)	154
BsrDI	GCAATG	1 cut(s)	436
BssECI	CCNNGG	2 cut(s)	331, 525
BssMI	GATC	4 cut(s)	8, 82, 124, 484
Bst2UI	CCWGG	2 cut(s)	111, 294
Bst6I	CTCTTC	2 cut(s)	291, 494
BstBI	TTCGAA	1 cut(s)	306
BstC8I	GCNNGC	1 cut(s)	450
BstDSI	CCRYGG	1 cut(s)	525
BstEII	GGTNACC	1 cut(s)	296
BstFNI	CGCG	1 cut(s)	454
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	4 cut(s)	11, 85, 127, 487
BstMBI	GATC	4 cut(s)	8, 82, 124, 484
BstMCI	CGRYCG	1 cut(s)	531
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 454
BstNI	CCWGG	2 cut(s)	111, 294
BstPI	GGTNACC	1 cut(s)	296
BstSCI	CCNGG	4 cut(s)	109, 292, 330, 331
BstUI	CGCG	1 cut(s)	454
BstZI	CGGCCG	1 cut(s)	528
BsuI	GTATCC	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	530
BtgI	CCRYGG	1 cut(s)	525
Cac8I	GCNNGC	1 cut(s)	450
CaiI	CAGNNNCTG	1 cut(s)	77
CciI	TCATGA	1 cut(s)	169
CfoI	GCGC	1 cut(s)	454
Cfr9I	CCCGGG	1 cut(s)	331
Csp6I	GTAC	2 cut(s)	209, 282
CviAII	CATG	2 cut(s)	170, 377
CviJI	RGCY	4 cut(s)	107, 149, 167, 530
CviKI_1	RGCY	4 cut(s)	107, 149, 167, 530
CviQI	GTAC	2 cut(s)	209, 282
DpnI	GATC	4 cut(s)	10, 84, 126, 486
DpnII	GATC	4 cut(s)	8, 82, 124, 484
DraI	TTTAAA	2 cut(s)	196, 397
EaeI	YGGCCR	1 cut(s)	528
EagI	CGGCCG	1 cut(s)	528
Eam1104I	CTCTTC	2 cut(s)	291, 494
EarI	CTCTTC	2 cut(s)	291, 494
Ecl136II	GAGCTC	1 cut(s)	167
EclXI	CGGCCG	1 cut(s)	528
Eco24I	GRGCYC	1 cut(s)	169
Eco52I	CGGCCG	1 cut(s)	528
Eco53kI	GAGCTC	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	331
Eco91I	GGTNACC	1 cut(s)	296
EcoICRI	GAGCTC	1 cut(s)	167
EcoO65I	GGTNACC	1 cut(s)	296
EcoRI	GAATTC	1 cut(s)	308
EcoRII	CCWGG	2 cut(s)	109, 292
EcoT38I	GRGCYC	1 cut(s)	169
FaeI	CATG	2 cut(s)	173, 380
FaqI	GGGAC	2 cut(s)	243, 527
FatI	CATG	2 cut(s)	169, 376
FauNDI	CATATG	1 cut(s)	443
Fnu4HI	GCNGC	1 cut(s)	455
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	1 cut(s)	455
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	1 cut(s)	455
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	530
HapII	CCGG	4 cut(s)	104, 146, 152, 332
HhaI	GCGC	1 cut(s)	454
Hin1II	CATG	2 cut(s)	173, 380
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HinfI	GANTC	8 cut(s)	28, 39, 74, 116, 231, 321, 370, 479
HpaII	CCGG	4 cut(s)	104, 146, 152, 332
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	4 cut(s)	73, 87, 129, 484
Hpy188III	TCNNGA	2 cut(s)	25, 170
Hpy8I	GTNNAC	1 cut(s)	493
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	155
HpyCH4V	TGCA	3 cut(s)	255, 392, 441
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 454
Hsp92II	CATG	2 cut(s)	173, 380
HspAI	GCGC	1 cut(s)	452
Kzo9I	GATC	4 cut(s)	8, 82, 124, 484
LmnI	GCTCC	5 cut(s)	106, 112, 148, 154, 164
MaeIII	GTNAC	3 cut(s)	247, 296, 353
MalI	GATC	4 cut(s)	10, 84, 126, 486
MboI	GATC	4 cut(s)	8, 82, 124, 484
MboII	GAAGA	3 cut(s)	278, 407, 511
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	2 cut(s)	308, 325
MlyI	GAGTC	3 cut(s)	125, 225, 330
MmeI	TCCRAC	1 cut(s)	16
MnlI	CCTC	5 cut(s)	54, 60, 300, 354, 495
MseI	TTAA	3 cut(s)	195, 396, 473
MslI	CAYNNNNRTG	2 cut(s)	426, 530
MspI	CCGG	4 cut(s)	104, 146, 152, 332
MspR9I	CCNGG	4 cut(s)	111, 294, 332, 333
MvaI	CCWGG	2 cut(s)	111, 294
MvnI	CGCG	1 cut(s)	454
MwoI	GCNNNNNNNGC	2 cut(s)	62, 454
NciI	CCSGG	2 cut(s)	332, 333
NdeI	CATATG	1 cut(s)	443
NdeII	GATC	4 cut(s)	8, 82, 124, 484
NlaIII	CATG	2 cut(s)	173, 380
NlaIV	GGNNCC	3 cut(s)	108, 150, 156
NmuCI	GTSAC	1 cut(s)	353
NspV	TTCGAA	1 cut(s)	306
OliI	CACNNNNGTG	1 cut(s)	530
PagI	TCATGA	1 cut(s)	169
PfeI	GAWTC	5 cut(s)	28, 39, 74, 370, 479
PfoI	TCCNGGA	1 cut(s)	109
PkrI	GCNGC	1 cut(s)	456
PleI	GAGTC	3 cut(s)	124, 225, 329
PpsI	GAGTC	3 cut(s)	124, 225, 329
Psp124BI	GAGCTC	1 cut(s)	169
Psp6I	CCWGG	2 cut(s)	109, 292
PspEI	GGTNACC	1 cut(s)	296
PspGI	CCWGG	2 cut(s)	109, 292
PspN4I	GGNNCC	3 cut(s)	108, 150, 156
PstNI	CAGNNNCTG	1 cut(s)	77
RsaI	GTAC	2 cut(s)	210, 283
RsaNI	GTAC	2 cut(s)	209, 282
RseI	CAYNNNNRTG	2 cut(s)	426, 530
SacI	GAGCTC	1 cut(s)	169
SaqAI	TTAA	3 cut(s)	195, 396, 473
SatI	GCNGC	1 cut(s)	455
Sau3AI	GATC	4 cut(s)	8, 82, 124, 484
SchI	GAGTC	3 cut(s)	125, 225, 330
ScrFI	CCNGG	4 cut(s)	111, 294, 332, 333
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	6 cut(s)	71, 169, 187, 193, 365, 506
SfuI	TTCGAA	1 cut(s)	306
SmaI	CCCGGG	1 cut(s)	333
SmiMI	CAYNNNNRTG	2 cut(s)	426, 530
SmlI	CTYRAG	1 cut(s)	358
SmoI	CTYRAG	1 cut(s)	358
Sse9I	AATT	2 cut(s)	308, 325
SsiI	CCGC	1 cut(s)	454
SstI	GAGCTC	1 cut(s)	169
StyD4I	CCNGG	4 cut(s)	109, 292, 330, 331
TaqI	TCGA	1 cut(s)	306
TasI	AATT	2 cut(s)	308, 325
TauI	GCSGC	1 cut(s)	457
TfiI	GAWTC	5 cut(s)	28, 39, 74, 370, 479
Tru1I	TTAA	3 cut(s)	195, 396, 473
Tru9I	TTAA	3 cut(s)	195, 396, 473
TseFI	GTSAC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	2 cut(s)	31, 425
TspMI	CCCGGG	1 cut(s)	331
XapI	RAATTY	1 cut(s)	308
XmaI	CCCGGG	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.