RLG00000013033

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000986
Physical Location & Seq
Forward (+)
25232186 .. 25232809
624 bp
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UTR
Exon/CDS
Intron
RLM00000013033

Sequence Viewer

Length: 447 bp
ATGAAGAGAAATGCAATAGTGAGGTTGTACTTTCTTTTATGGTTTGCTGCAGGGTTGGCATTTGGCAAACAGGCTCAAAAAGCTACTTCTGCACAATTAGATTCTCCTAGACCTCTCGGCAAATATTTTGTGCGCATTGTGAACAACTTCGATAACAAAAAGCTCGACATTCGCTGTAAGTCTAAAAATGACGATCTCGGACTCCACAGCCTTTATGCTAACGGGGATCAATATGAATTTGGATTTAGGGCCAACATCACTCTTACCACACTTTTCTGGTGCAATTTATGGTATTTGAACCACCATGTTGCATTTGAAGCATTTAGCAAGAATATAATTATCCCCGGAAATCATTTCATATATCGAGTGCAGGAGGATGGGATATGGTTGTATAACCCAAGATTTGTTGGTGTTTATCAACTGGTGCATAAGTGGGACGAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

149

Amino Acids

17.41

Weight (kDa)

9.39

Isoelectric Point (pI)

26.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 44 - 145 4.8e-21 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 134
AclWI GGATC 1 cut(s) 234
AcsI RAATTY 1 cut(s) 236
AfaI GTAC 1 cut(s) 29
AgsI TTSAA 2 cut(s) 298, 317
AluBI AGCT 2 cut(s) 83, 163
AluI AGCT 2 cut(s) 83, 163
AlwI GGATC 1 cut(s) 234
AoxI GGCC 1 cut(s) 249
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 236
Asp700I GAANNNNTTC 1 cut(s) 146
AspLEI GCGC 1 cut(s) 135
AspS9I GGNCC 1 cut(s) 249
AsuC2I CCSGG 1 cut(s) 345
BbvI GCAGC 1 cut(s) 34
BccI CCATC 1 cut(s) 371
BcnI CCSGG 1 cut(s) 345
BfaI CTAG 1 cut(s) 108
BfmI CTRYAG 1 cut(s) 48
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 1 cut(s) 345
BmgT120I GGNCC 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 345
BpuMI CCSGG 1 cut(s) 345
BsaJI CCNNGG 1 cut(s) 343
Bse1I ACTGG 1 cut(s) 426
BseDI CCNNGG 1 cut(s) 343
BseGI GGATG 1 cut(s) 382
BseNI ACTGG 1 cut(s) 426
BseXI GCAGC 1 cut(s) 34
BsgI GTGCAG 2 cut(s) 75, 389
BshFI GGCC 1 cut(s) 251
BsiSI CCGG 1 cut(s) 345
BsnI GGCC 1 cut(s) 251
Bsp143I GATC 2 cut(s) 193, 226
BspANI GGCC 1 cut(s) 251
BspMAI CTGCAG 1 cut(s) 52
BspPI GGATC 1 cut(s) 234
BsrI ACTGG 1 cut(s) 426
BssECI CCNNGG 1 cut(s) 343
BssMI GATC 2 cut(s) 193, 226
BstF5I GGATG 1 cut(s) 382
BstHHI GCGC 1 cut(s) 135
BstKTI GATC 2 cut(s) 196, 229
BstMBI GATC 2 cut(s) 193, 226
BstMWI GCNNNNNNNGC 4 cut(s) 56, 80, 89, 317
BstSCI CCNGG 1 cut(s) 343
BstSFI CTRYAG 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 34
BsuRI GGCC 1 cut(s) 251
BtsCI GGATG 1 cut(s) 382
CfoI GCGC 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 249
Csp6I GTAC 1 cut(s) 28
CviAII CATG 1 cut(s) 305
CviJI RGCY 5 cut(s) 74, 83, 163, 210, 251
CviKI_1 RGCY 5 cut(s) 74, 83, 163, 210, 251
CviQI GTAC 1 cut(s) 28
DpnI GATC 2 cut(s) 195, 228
DpnII GATC 2 cut(s) 193, 226
FaeI CATG 1 cut(s) 308
FatI CATG 1 cut(s) 304
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 1 cut(s) 389
Fsp4HI GCNGC 1 cut(s) 48
FspAI RTGCGCAY 1 cut(s) 134
FspBI CTAG 1 cut(s) 108
FspI TGCGCA 1 cut(s) 134
GlaI GCGC 1 cut(s) 134
GluI GCNGC 1 cut(s) 48
HaeIII GGCC 1 cut(s) 251
HapII CCGG 1 cut(s) 345
HhaI GCGC 1 cut(s) 135
Hin1II CATG 1 cut(s) 308
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HinfI GANTC 2 cut(s) 101, 201
HpaII CCGG 1 cut(s) 345
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 200
Hpy8I GTNNAC 1 cut(s) 142
HpyCH4V TGCA 7 cut(s) 14, 50, 92, 282, 311, 370, 427
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 80, 89, 317
Hsp92II CATG 1 cut(s) 308
HspAI GCGC 1 cut(s) 133
Kzo9I GATC 2 cut(s) 193, 226
LpnPI CCDG 6 cut(s) 36, 56, 262, 356, 358, 407
Lsp1109I GCAGC 1 cut(s) 34
MaeI CTAG 1 cut(s) 108
MalI GATC 2 cut(s) 195, 228
MboI GATC 2 cut(s) 193, 226
MboII GAAGA 1 cut(s) 16
MluCI AATT 5 cut(s) 95, 236, 283, 336, 442
MlyI GAGTC 1 cut(s) 195
MnlI CCTC 3 cut(s) 15, 123, 367
MroXI GAANNNNTTC 1 cut(s) 146
MseI TTAA 1 cut(s) 445
MspI CCGG 1 cut(s) 345
MspR9I CCNGG 1 cut(s) 345
MwoI GCNNNNNNNGC 4 cut(s) 56, 80, 89, 317
NciI CCSGG 1 cut(s) 345
NdeII GATC 2 cut(s) 193, 226
NlaIII CATG 1 cut(s) 308
NmeAIII GCCGAG 1 cut(s) 96
NsbI TGCGCA 1 cut(s) 134
PdmI GAANNNNTTC 1 cut(s) 146
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
PspPI GGNCC 1 cut(s) 249
PstI CTGCAG 1 cut(s) 52
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
SaqAI TTAA 1 cut(s) 445
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 2 cut(s) 193, 226
Sau96I GGNCC 1 cut(s) 249
SchI GAGTC 1 cut(s) 195
ScrFI CCNGG 1 cut(s) 345
SetI ASST 4 cut(s) 26, 85, 115, 165
SfcI CTRYAG 1 cut(s) 48
Sse9I AATT 5 cut(s) 95, 236, 283, 336, 442
SspI AATATT 1 cut(s) 125
SspMI CTAG 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 343
TaqI TCGA 3 cut(s) 150, 165, 364
TasI AATT 5 cut(s) 95, 236, 283, 336, 442
TatI WGTACW 1 cut(s) 27
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 445
Tru9I TTAA 1 cut(s) 445
TseI GCWGC 1 cut(s) 47
TspDTI ATGAA 3 cut(s) 17, 249, 346
XapI RAATTY 1 cut(s) 236
XmnI GAANNNNTTC 1 cut(s) 146
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.