Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000986

Physical Location & Seq

Genomic Coordinates Forward (+)

14311493 .. 14312128

Gene Structure 636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G29037.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGGAAAATCTTTGCTAAGTTTATTTGTTATCCTCCTTTCGTTTGATTCTATAAACTCTTATTTGATGCCTCCTCTCTTCAGAAAATTCAATGTCCAAATAGTAAATCAACTTGAGTTTCACAAGATACTGAAAGTTCATTGCAAGAGCAAATCTCACAATTTCCCAATCACATATCTTAAAATTGGTGAAAGTTTTCAGTTTAAATTTAAAATTTATCCAAAAACTCAGTATTGGTGTAATTTATGGCAGGGACCAAATTACAAACACCATGTGGTTTTTGATGCGTTTCGTCCAGACAAAGATTTTATAGATGGTACATGTACTGGTATGCATCCTAATGTATGTAGATGGACTGCAAAAGAAGAAGGAGTCTATGTCCGCAACAAAAAGTTCGAAGGAGAATATTTCATGTATACATGGGATGGTCCATCAAAACTTGGAAACATCTCTCCAGTGTCTGCACCTACAAGTGAATCAGAATTGGACTCATCAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

166

Amino Acids

19.36

Weight (kDa)

8.98

Isoelectric Point (pI)

39.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	31 - 141	9.4e-23	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11765 AT1G28305 AT1G28306 AT2G06090 AT2G23142 AT2G23148 AT2G24870 AT2G24880 AT3G10460 AT3G26860 AT3G26860 AT3G26870 AT3G26880 AT3G27329 AT3G27331 AT3G27680 AT4G10895 AT4G29037 AT5G04047 AT5G04347 AT5G04347 AT5G04350 AT5G27238 AT5G38435 AT5G38440
fragaria_vesca	FvH4_2g19740 FvH4_3g21860 FvH4_4g05400
malus_domestica	MD05G1181700.v1.1 MD13G1110700.v1.1
prunus_persica	Prupe.1G059400_v2.0.a1 Prupe.1G059600_v2.0.a1 Prupe.1G219300_v2.0.a1 Prupe.1G219600_v2.0.a1 Prupe.1G219700_v2.0.a1 Prupe.8G208500_v2.0.a1 Prupe.8G208600_v2.0.a1 Prupe.8G208800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396541 RchiOBHm_Chr4g0396551
rosa_laevigata	RLG00000009525 RLG00000009526 RLG00000012772 RLG00000013033
rosa_multiflora	Rmu_sc0001781.1_g000005 Rmu_sc0001781.1_g000008 Rmu_sc0002909.1_g000007
rosa_roxburghii	Rroxscaffold_5G00341400
rosa_rugosa	Rorug03G0349100 Rorug05G0091600 Rorug06G0160300
rosa_samantha	Rh4AG069600 Rh4AG069800 Rh4BG067300 Rh4BG067400 Rh4CG075200 Rh4CG075300 Rh4DG064800 Rh5BG181300 Rh5DG183000
rosa_wichuraiana	Rw4G005590 Rw5G016720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	494
AccI	GTMKAC	1 cut(s)	416
AciI	CCGC	1 cut(s)	382
AcsI	RAATTY	3 cut(s)	86, 206, 213
AcuI	CTGAAG	1 cut(s)	64
AdeI	CACNNNGTG	1 cut(s)	274
AfaI	GTAC	2 cut(s)	319, 325
AflIII	ACRYGT	1 cut(s)	320
AgsI	TTSAA	1 cut(s)	91
AlwNI	CAGNNNCTG	1 cut(s)	461
ApoI	RAATTY	3 cut(s)	86, 206, 213
Asp700I	GAANNNNTTC	1 cut(s)	195
AspS9I	GGNCC	2 cut(s)	254, 428
AsuHPI	GGTGA	1 cut(s)	200
AsuII	TTCGAA	1 cut(s)	396
AvaII	GGWCC	2 cut(s)	254, 428
BccI	CCATC	4 cut(s)	308, 345, 419, 439
Bme18I	GGWCC	2 cut(s)	254, 428
BmgT120I	GGNCC	2 cut(s)	254, 428
BmiI	GGNNCC	1 cut(s)	255
BmsI	GCATC	3 cut(s)	57, 274, 343
BplI	GAGNNNNNCTC	2 cut(s)	139, 171
BpmI	CTGGAG	1 cut(s)	438
Bpu14I	TTCGAA	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	134
BsaXI	ACNNNNNCTCC	2 cut(s)	363, 393
Bse1I	ACTGG	2 cut(s)	331, 455
Bse3DI	GCAATG	1 cut(s)	139
BseGI	GGATG	2 cut(s)	334, 430
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	2 cut(s)	331, 455
BseRI	GAGGAG	1 cut(s)	63
BsgI	GTGCAG	1 cut(s)	447
BslFI	GGGAC	1 cut(s)	267
BsmFI	GGGAC	1 cut(s)	267
Bsp119I	TTCGAA	1 cut(s)	396
BspACI	CCGC	1 cut(s)	382
BspCNI	CTCAG	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	255
BspT104I	TTCGAA	1 cut(s)	396
BsrDI	GCAATG	1 cut(s)	139
BsrI	ACTGG	2 cut(s)	331, 455
BssNAI	GTATAC	1 cut(s)	417
Bst1107I	GTATAC	1 cut(s)	417
Bst6I	CTCTTC	1 cut(s)	83
BstBI	TTCGAA	1 cut(s)	396
BstDEI	CTNAG	2 cut(s)	17, 228
BstF5I	GGATG	2 cut(s)	334, 430
BstNSI	RCATGY	1 cut(s)	324
BstZ17I	GTATAC	1 cut(s)	417
BtsCI	GGATG	2 cut(s)	334, 430
BtsIMutI	CAGTG	1 cut(s)	462
CaiI	CAGNNNCTG	1 cut(s)	461
Cfr13I	GGNCC	2 cut(s)	254, 428
Csp6I	GTAC	2 cut(s)	318, 324
CviAII	CATG	4 cut(s)	272, 321, 412, 420
CviQI	GTAC	2 cut(s)	318, 324
DdeI	CTNAG	2 cut(s)	17, 228
DraI	TTTAAA	2 cut(s)	205, 211
DraIII	CACNNNGTG	1 cut(s)	274
DrdI	GACNNNNNNGTC	1 cut(s)	494
DseDI	GACNNNNNNGTC	1 cut(s)	494
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Eco47I	GGWCC	2 cut(s)	254, 428
Eco57I	CTGAAG	1 cut(s)	64
EcoT22I	ATGCAT	1 cut(s)	336
FaeI	CATG	4 cut(s)	275, 324, 415, 423
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	4 cut(s)	271, 320, 411, 419
FblI	GTMKAC	1 cut(s)	416
FokI	GGATG	2 cut(s)	321, 437
GsuI	CTGGAG	1 cut(s)	438
Hin1II	CATG	4 cut(s)	275, 324, 415, 423
HinfI	GANTC	4 cut(s)	47, 372, 476, 488
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	417
Hpy188I	TCNGA	2 cut(s)	83, 481
Hpy188III	TCNNGA	1 cut(s)	296
Hpy8I	GTNNAC	1 cut(s)	417
HpyAV	CCTTC	2 cut(s)	362, 392
HpyCH4V	TGCA	4 cut(s)	144, 334, 359, 464
HpyF3I	CTNAG	2 cut(s)	17, 228
Hsp92II	CATG	4 cut(s)	275, 324, 415, 423
LpnPI	CCDG	4 cut(s)	236, 309, 312, 468
LweI	GCATC	3 cut(s)	57, 274, 343
MboII	GAAGA	2 cut(s)	70, 377
MluCI	AATT	8 cut(s)	86, 160, 183, 206, 213, 241, 259, 482
MlyI	GAGTC	2 cut(s)	381, 482
MnlI	CCTC	3 cut(s)	44, 81, 84
Mph1103I	ATGCAT	1 cut(s)	336
MroXI	GAANNNNTTC	1 cut(s)	195
MseI	TTAA	3 cut(s)	180, 204, 210
MslI	CAYNNNNRTG	1 cut(s)	339
NlaIII	CATG	4 cut(s)	275, 324, 415, 423
NlaIV	GGNNCC	1 cut(s)	255
NsiI	ATGCAT	1 cut(s)	336
NspI	RCATGY	1 cut(s)	324
NspV	TTCGAA	1 cut(s)	396
PciI	ACATGT	1 cut(s)	320
PdmI	GAANNNNTTC	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	47, 476
PleI	GAGTC	2 cut(s)	380, 482
PpsI	GAGTC	2 cut(s)	380, 482
PscI	ACATGT	1 cut(s)	320
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	2 cut(s)	254, 428
PstNI	CAGNNNCTG	1 cut(s)	461
RsaI	GTAC	2 cut(s)	319, 325
RsaNI	GTAC	2 cut(s)	318, 324
RseI	CAYNNNNRTG	1 cut(s)	339
SaqAI	TTAA	3 cut(s)	180, 204, 210
Sau96I	GGNCC	2 cut(s)	254, 428
SchI	GAGTC	2 cut(s)	381, 482
SetI	ASST	1 cut(s)	469
SfaNI	GCATC	3 cut(s)	57, 274, 343
SfuI	TTCGAA	1 cut(s)	396
SinI	GGWCC	2 cut(s)	254, 428
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	8 cut(s)	86, 160, 183, 206, 213, 241, 259, 482
SsiI	CCGC	1 cut(s)	382
SspI	AATATT	1 cut(s)	407
TaqI	TCGA	1 cut(s)	396
TasI	AATT	8 cut(s)	86, 160, 183, 206, 213, 241, 259, 482
TatI	WGTACW	1 cut(s)	323
TfiI	GAWTC	2 cut(s)	47, 476
Tru1I	TTAA	3 cut(s)	180, 204, 210
Tru9I	TTAA	3 cut(s)	180, 204, 210
TscAI	CASTG	1 cut(s)	462
TspDTI	ATGAA	2 cut(s)	128, 400
TspRI	CASTG	1 cut(s)	462
VpaK11BI	GGWCC	2 cut(s)	254, 428
XapI	RAATTY	3 cut(s)	86, 206, 213
XceI	RCATGY	1 cut(s)	324
XmiI	GTMKAC	1 cut(s)	416
XmnI	GAANNNNTTC	1 cut(s)	195
Zsp2I	ATGCAT	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.