Prupe.8G208600_v2.0.a1

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000986
Physical Location & Seq
Forward (+)
19410112 .. 19410537
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G208600.1

Sequence Viewer

Length: 426 bp
ATGAGGGCGCCATGCCTATCCTACATTTCCATGCTCTTACTTGCCCTAGTTATCTTCCTCAGCCAAACCCAAGTCACGTATTCACTTTTCAACAAGTACCGGGTGCATGTTATCAACGGGTTGTCAAAAGACACTCTTACAATTCATTGTCAATCCAAAGACACCGATCTGGGAATCCATGAACTTGCAGTGAACCAGGAATTTGAATGGGAGTTTCGCACCAACTTTTTCGATACAACTCTTTTCTTTTGCAACCTGCGGTGGAACGGTGGACATAAATCTTTTGATGCGTTCAAAGTCGATGAAAAAGGTCTGTTGAATGATTGTAGCGCTAATGATTGTATGTGGTTAGCAAGAGATGATGGGATTAACTTGTTTAATTATCCCCACAAAGAATATCGACAAAAATATAAATGGGATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

142

Amino Acids

16.66

Weight (kDa)

6.5

Isoelectric Point (pI)

19.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 264
AccB1I GGYRCC 1 cut(s) 7
AciI CCGC 1 cut(s) 259
AcsI RAATTY 1 cut(s) 200
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 1 cut(s) 98
AfeI AGCGCT 1 cut(s) 331
AgsI TTSAA 4 cut(s) 91, 206, 295, 319
AjnI CCWGG 1 cut(s) 195
Aor51HI AGCGCT 1 cut(s) 331
ApoI RAATTY 1 cut(s) 200
AspLEI GCGC 2 cut(s) 10, 332
AsuC2I CCSGG 1 cut(s) 101
BanI GGYRCC 1 cut(s) 7
BbvCI CCTCAGC 1 cut(s) 59
BccI CCATC 1 cut(s) 356
BciT130I CCWGG 1 cut(s) 197
BcnI CCSGG 1 cut(s) 101
BfaI CTAG 1 cut(s) 47
BfoI RGCGCY 2 cut(s) 11, 333
BfuAI ACCTGC 1 cut(s) 264
Bme1390I CCNGG 2 cut(s) 101, 197
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 2 cut(s) 101, 197
BmsI GCATC 1 cut(s) 277
Bpu10I CCTNAGC 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 101
BsaAI YACGTR 1 cut(s) 78
BsaHI GRCGYC 1 cut(s) 8
BseBI CCWGG 1 cut(s) 197
BseMII CTCAG 1 cut(s) 73
BshNI GGYRCC 1 cut(s) 7
BsiSI CCGG 1 cut(s) 100
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 1 cut(s) 259
BspCNI CTCAG 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 9
BspMI ACCTGC 1 cut(s) 264
BspT107I GGYRCC 1 cut(s) 7
BssMI GATC 1 cut(s) 166
BssNI GRCGYC 1 cut(s) 8
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 269
BstACI GRCGYC 1 cut(s) 8
BstBAI YACGTR 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 59
BstH2I RGCGCY 2 cut(s) 11, 333
BstHHI GCGC 2 cut(s) 10, 332
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstNI CCWGG 1 cut(s) 197
BstNSI RCATGY 1 cut(s) 110
BstSCI CCNGG 2 cut(s) 99, 195
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 195
BveI ACCTGC 1 cut(s) 264
CfoI GCGC 2 cut(s) 10, 332
Csp6I GTAC 1 cut(s) 97
CviAII CATG 4 cut(s) 12, 31, 107, 179
CviJI RGCY 1 cut(s) 63
CviKI_1 RGCY 1 cut(s) 63
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 1 cut(s) 59
DinI GGCGCC 1 cut(s) 9
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Eco47III AGCGCT 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 195
EgeI GGCGCC 1 cut(s) 9
EheI GGCGCC 1 cut(s) 9
FaeI CATG 4 cut(s) 15, 34, 110, 182
FaiI YATR 7 cut(s) 13, 32, 108, 180, 276, 344, 411
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FatI CATG 4 cut(s) 11, 30, 106, 178
FspBI CTAG 1 cut(s) 47
GlaI GCGC 2 cut(s) 9, 331
HaeII RGCGCY 2 cut(s) 11, 333
HapII CCGG 1 cut(s) 100
HhaI GCGC 2 cut(s) 10, 332
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 4 cut(s) 15, 34, 110, 182
Hin6I GCGC 2 cut(s) 8, 330
HinP1I GCGC 2 cut(s) 8, 330
HinfI GANTC 1 cut(s) 174
HpaII CCGG 1 cut(s) 100
Hpy166II GTNNAC 2 cut(s) 193, 272
Hpy8I GTNNAC 2 cut(s) 193, 272
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4IV ACGT 1 cut(s) 77
HpyCH4V TGCA 3 cut(s) 106, 188, 252
HpyF3I CTNAG 1 cut(s) 59
HpySE526I ACGT 1 cut(s) 77
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 4 cut(s) 15, 34, 110, 182
HspAI GCGC 2 cut(s) 8, 330
KasI GGCGCC 1 cut(s) 7
Kzo9I GATC 1 cut(s) 166
LpnPI CCDG 5 cut(s) 113, 155, 182, 209, 269
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 47
MaeII ACGT 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 73
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 1 cut(s) 46
MluCI AATT 3 cut(s) 141, 200, 379
Mly113I GGCGCC 1 cut(s) 8
MnlI CCTC 1 cut(s) 68
MseI TTAA 2 cut(s) 369, 378
MslI CAYNNNNRTG 1 cut(s) 29
MspI CCGG 1 cut(s) 100
MspR9I CCNGG 2 cut(s) 101, 197
MvaI CCWGG 1 cut(s) 197
NarI GGCGCC 1 cut(s) 8
NciI CCSGG 1 cut(s) 101
NdeII GATC 1 cut(s) 166
NlaIII CATG 4 cut(s) 15, 34, 110, 182
NlaIV GGNNCC 1 cut(s) 9
NmuCI GTSAC 1 cut(s) 73
NspI RCATGY 1 cut(s) 110
PfeI GAWTC 1 cut(s) 174
PluTI GGCGCC 1 cut(s) 11
Ppu21I YACGTR 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 9
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
RseI CAYNNNNRTG 1 cut(s) 29
SaqAI TTAA 2 cut(s) 369, 378
Sau3AI GATC 1 cut(s) 166
ScrFI CCNGG 2 cut(s) 101, 197
SetI ASST 3 cut(s) 80, 258, 313
SfaNI GCATC 1 cut(s) 277
SfoI GGCGCC 1 cut(s) 9
SmiMI CAYNNNNRTG 1 cut(s) 29
Sse9I AATT 3 cut(s) 141, 200, 379
SsiI CCGC 1 cut(s) 259
SspDI GGCGCC 1 cut(s) 7
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 2 cut(s) 99, 195
TaaI ACNGT 1 cut(s) 269
TaiI ACGT 1 cut(s) 80
TaqI TCGA 3 cut(s) 231, 300, 400
TasI AATT 3 cut(s) 141, 200, 379
TfiI GAWTC 1 cut(s) 174
Tru1I TTAA 2 cut(s) 369, 378
Tru9I TTAA 2 cut(s) 369, 378
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 3 cut(s) 134, 195, 318
TspRI CASTG 1 cut(s) 195
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 110
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.