Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000986

Physical Location & Seq

Genomic Coordinates Forward (+)

21269207 .. 21269665

Gene Structure 459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G016720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAAGGGATCAAGAGCATCGTTCATGTTGTTCTTTGTTGGGTTGACATTTTGTCTTGCGAGCCCGGAGTCTACTGCTCCGACCTCGGGTGGAGAGAGTGACTGGTGGACACCTAGACCCGGTAAAAAGTATTTTGTGCGGATTGTGAACGACCTCAATAAACAGAAACTCGACTATCCTTGTAAATCTGCAGACGATGATCTCGGACTTCGTAGTCTTCCTCATCAAGCGAAGTACGAGTTTGGATTTAGGCTCAACTTCGCAGGTACCACACTTTTCACCTGCGATTTCACTTATGCTCTCAACCATGTCACCTTTGTAGCATTTAGAACCGATCAAAGTTTTCTTCCCGATTGTGGTGGAGTGCATTGCATATGGAAGGCTCAAGAGGATGGACTATACTTATATAATATTGCGGATGCAGAGTATGTAATAAAGAAGCATTCGTGGAACGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

152

Amino Acids

17.3

Weight (kDa)

6.41

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	46 - 143	3.3e-23	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11765 AT1G28305 AT1G28306 AT2G06090 AT2G23142 AT2G23148 AT2G24870 AT2G24880 AT3G10460 AT3G26860 AT3G26860 AT3G26870 AT3G26880 AT3G27329 AT3G27331 AT3G27680 AT4G10895 AT4G29037 AT5G04047 AT5G04347 AT5G04347 AT5G04350 AT5G27238 AT5G38435 AT5G38440
fragaria_vesca	FvH4_2g19740 FvH4_3g21860 FvH4_4g05400
malus_domestica	MD05G1181700.v1.1 MD13G1110700.v1.1
prunus_persica	Prupe.1G059400_v2.0.a1 Prupe.1G059600_v2.0.a1 Prupe.1G219300_v2.0.a1 Prupe.1G219600_v2.0.a1 Prupe.1G219700_v2.0.a1 Prupe.8G208500_v2.0.a1 Prupe.8G208600_v2.0.a1 Prupe.8G208800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396541 RchiOBHm_Chr4g0396551
rosa_laevigata	RLG00000009525 RLG00000009526 RLG00000012772 RLG00000013033
rosa_multiflora	Rmu_sc0001781.1_g000005 Rmu_sc0001781.1_g000008 Rmu_sc0002909.1_g000007
rosa_roxburghii	Rroxscaffold_5G00341400
rosa_rugosa	Rorug03G0349100 Rorug05G0091600 Rorug06G0160300
rosa_samantha	Rh4AG069600 Rh4AG069800 Rh4BG067300 Rh4BG067400 Rh4CG075200 Rh4CG075300 Rh4DG064800 Rh5BG181300 Rh5DG183000
rosa_wichuraiana	Rw4G005590 Rw5G016720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	290
AasI	GACNNNNNNGTC	1 cut(s)	213
Acc36I	ACCTGC	2 cut(s)	254, 290
Acc65I	GGTACC	1 cut(s)	266
AccB1I	GGYRCC	1 cut(s)	266
AccI	GTMKAC	1 cut(s)	71
AciI	CCGC	2 cut(s)	139, 416
AclWI	GGATC	1 cut(s)	16
AfaI	GTAC	2 cut(s)	236, 268
AfiI	CCNNNNNNNGG	3 cut(s)	86, 119, 356
AhdI	GACNNNNNGTC	1 cut(s)	51
AlwI	GGATC	1 cut(s)	16
Ama87I	CYCGRG	1 cut(s)	85
Asp718I	GGTACC	1 cut(s)	266
AsuC2I	CCSGG	2 cut(s)	65, 120
AsuHPI	GGTGA	2 cut(s)	271, 304
AvaI	CYCGRG	1 cut(s)	85
BanI	GGYRCC	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	209
BccI	CCATC	1 cut(s)	386
BcnI	CCSGG	2 cut(s)	65, 120
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	1 cut(s)	189
BfuAI	ACCTGC	2 cut(s)	254, 290
Bme1390I	CCNGG	2 cut(s)	65, 120
BmeRI	GACNNNNNGTC	1 cut(s)	51
BmeT110I	CYCGRG	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	2 cut(s)	65, 120
BmsI	GCATC	2 cut(s)	26, 409
BpiI	GAAGAC	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	369
BpuMI	CCSGG	2 cut(s)	65, 120
BsaJI	CCNNGG	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 119, 356
Bse1I	ACTGG	1 cut(s)	107
Bse3DI	GCAATG	1 cut(s)	367
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	2 cut(s)	397, 424
BseLI	CCNNNNNNNGG	3 cut(s)	86, 119, 356
BseMI	GCAATG	1 cut(s)	367
BseNI	ACTGG	1 cut(s)	107
BshNI	GGYRCC	1 cut(s)	266
BsiHKCI	CYCGRG	1 cut(s)	85
BsiSI	CCGG	2 cut(s)	65, 120
BslI	CCNNNNNNNGG	3 cut(s)	86, 119, 356
BsmI	GAATGC	1 cut(s)	442
BsoBI	CYCGRG	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	3 cut(s)	8, 199, 334
BspACI	CCGC	2 cut(s)	139, 416
BspLI	GGNNCC	1 cut(s)	268
BspMAI	CTGCAG	1 cut(s)	193
BspMI	ACCTGC	2 cut(s)	254, 290
BspPI	GGATC	1 cut(s)	16
BspT107I	GGYRCC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	367
BsrI	ACTGG	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	3 cut(s)	8, 199, 334
BstC8I	GCNNGC	1 cut(s)	61
BstF5I	GGATG	2 cut(s)	397, 424
BstKTI	GATC	3 cut(s)	11, 202, 337
BstMBI	GATC	3 cut(s)	8, 199, 334
BstSCI	CCNGG	2 cut(s)	63, 118
BstSFI	CTRYAG	1 cut(s)	189
BstV2I	GAAGAC	1 cut(s)	209
BtsCI	GGATG	2 cut(s)	397, 424
BveI	ACCTGC	2 cut(s)	254, 290
Cac8I	GCNNGC	1 cut(s)	61
Csp6I	GTAC	2 cut(s)	235, 267
CviAII	CATG	2 cut(s)	25, 308
CviJI	RGCY	3 cut(s)	63, 253, 383
CviKI_1	RGCY	3 cut(s)	63, 253, 383
CviQI	GTAC	2 cut(s)	235, 267
DpnI	GATC	3 cut(s)	10, 201, 336
DpnII	GATC	3 cut(s)	8, 199, 334
DrdI	GACNNNNNNGTC	1 cut(s)	213
DriI	GACNNNNNGTC	1 cut(s)	51
DseDI	GACNNNNNNGTC	1 cut(s)	213
Eam1105I	GACNNNNNGTC	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	65
Eco88I	CYCGRG	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	65
FaeI	CATG	2 cut(s)	28, 311
FaiI	YATR	9 cut(s)	26, 297, 309, 374, 376, 400, 406, 408, 429
FatI	CATG	2 cut(s)	24, 307
FauNDI	CATATG	1 cut(s)	374
FblI	GTMKAC	1 cut(s)	71
FokI	GGATG	2 cut(s)	404, 431
FriOI	GRGCYC	1 cut(s)	65
FspBI	CTAG	1 cut(s)	114
HapII	CCGG	2 cut(s)	65, 120
Hin1II	CATG	2 cut(s)	28, 311
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	2 cut(s)	65, 120
HphI	GGTGA	2 cut(s)	271, 304
Hpy166II	GTNNAC	4 cut(s)	45, 72, 108, 148
Hpy188I	TCNGA	2 cut(s)	81, 206
Hpy188III	TCNNGA	3 cut(s)	12, 350, 386
Hpy8I	GTNNAC	4 cut(s)	45, 72, 108, 148
HpyAV	CCTTC	1 cut(s)	373
HpyCH4V	TGCA	4 cut(s)	191, 367, 372, 422
Hsp92II	CATG	2 cut(s)	28, 311
KpnI	GGTACC	1 cut(s)	270
Kzo9I	GATC	3 cut(s)	8, 199, 334
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	5 cut(s)	78, 88, 133, 249, 295
LweI	GCATC	2 cut(s)	26, 409
MaeI	CTAG	1 cut(s)	114
MaeIII	GTNAC	2 cut(s)	98, 310
MalI	GATC	3 cut(s)	10, 201, 336
MboI	GATC	3 cut(s)	8, 199, 334
MboII	GAAGA	2 cut(s)	209, 338
MhlI	GDGCHC	1 cut(s)	65
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	4 cut(s)	94, 164, 231, 382
MspI	CCGG	2 cut(s)	65, 120
MspR9I	CCNGG	2 cut(s)	65, 120
Mva1269I	GAATGC	1 cut(s)	442
NciI	CCSGG	2 cut(s)	65, 120
NdeI	CATATG	1 cut(s)	374
NdeII	GATC	3 cut(s)	8, 199, 334
NlaIII	CATG	2 cut(s)	28, 311
NlaIV	GGNNCC	1 cut(s)	268
NmuCI	GTSAC	2 cut(s)	98, 310
PaqCI	CACCTGC	1 cut(s)	290
PctI	GAATGC	1 cut(s)	442
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	268
PstI	CTGCAG	1 cut(s)	193
RsaI	GTAC	2 cut(s)	236, 268
RsaNI	GTAC	2 cut(s)	235, 267
Sau3AI	GATC	3 cut(s)	8, 199, 334
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	2 cut(s)	65, 120
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	6 cut(s)	86, 115, 156, 268, 284, 317
SfaNI	GCATC	2 cut(s)	26, 409
SfcI	CTRYAG	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
SsiI	CCGC	2 cut(s)	139, 416
SspI	AATATT	1 cut(s)	412
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	63, 118
TaqI	TCGA	1 cut(s)	171
TseFI	GTSAC	2 cut(s)	98, 310
Tsp45I	GTSAC	2 cut(s)	98, 310
TspDTI	ATGAA	2 cut(s)	13, 17
XmiI	GTMKAC	1 cut(s)	71
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.