AT4G10895

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000986
Physical Location & Seq
Reverse (-)
6693364 .. 6694718
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G10895.1

Sequence Viewer

Length: 426 bp
ATGATAGAAAAATTTATAATATATTTTGCCTTGTTCGCCTTTTTAATCCAAAGAACAGACTCTATTCTTACATTTAGACGTTTTAACATTGAAATTTCAAATCAACTTGGGGGTAACAATAAACTTATGGTCCAGTGTAGATCTGGTCAGGAATCGACCCGAGTTGTTTTTCTTGCATTCAGTGATGTGTTCAAAGCTCCTTTAAGAATTGGGTTTAAGACATTGATATGGTGCACCTTATGGAAGGGACCTGATTTTAAGCATCATGTAAGTTTTGACGCATTTGTTGGGAAAGAGAGTTTTATACATGATGTATGTGGGAGTATGAAGCCTAACATATGTTTCTGGCAAGTGCAAGATGATGGAGTATGGGCACGTAATAATCCAACCGGAGCTCTCAAGTTAATGTATAAATGGAATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

141

Amino Acids

16.42

Weight (kDa)

9.47

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 30 - 139 6.2e-20 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 17
AcsI RAATTY 2 cut(s) 11, 93
AgsI TTSAA 3 cut(s) 92, 99, 193
AluBI AGCT 2 cut(s) 197, 395
AluI AGCT 2 cut(s) 197, 395
Alw21I GWGCWC 2 cut(s) 236, 397
Alw44I GTGCAC 1 cut(s) 232
Ama87I CYCGRG 1 cut(s) 159
ApaLI GTGCAC 1 cut(s) 232
ApoI RAATTY 2 cut(s) 11, 93
AspS9I GGNCC 2 cut(s) 130, 248
AvaI CYCGRG 1 cut(s) 159
AvaII GGWCC 2 cut(s) 130, 248
BaeGI GKGCMC 2 cut(s) 236, 376
BanII GRGCYC 1 cut(s) 397
Bbv12I GWGCWC 2 cut(s) 236, 397
BccI CCATC 1 cut(s) 356
BglII AGATCT 1 cut(s) 140
Bme18I GGWCC 2 cut(s) 130, 248
BmeT110I CYCGRG 1 cut(s) 159
BmgT120I GGNCC 2 cut(s) 130, 248
BmiI GGNNCC 1 cut(s) 249
BmsI GCATC 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 383
BsaAI YACGTR 1 cut(s) 377
BsaWI WCCGGW 1 cut(s) 389
Bse1I ACTGG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 133
BseSI GKGCMC 2 cut(s) 236, 376
BsiHKAI GWGCWC 2 cut(s) 236, 397
BsiHKCI CYCGRG 1 cut(s) 159
BsiSI CCGG 1 cut(s) 390
BslFI GGGAC 1 cut(s) 261
BsmFI GGGAC 1 cut(s) 261
BsmI GAATGC 1 cut(s) 176
BsoBI CYCGRG 1 cut(s) 159
Bsp1286I GDGCHC 3 cut(s) 236, 376, 397
Bsp143I GATC 1 cut(s) 140
BspLI GGNNCC 1 cut(s) 249
BsrI ACTGG 1 cut(s) 133
BssMI GATC 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 377
BstKTI GATC 1 cut(s) 143
BstMBI GATC 1 cut(s) 140
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstSLI GKGCMC 2 cut(s) 236, 376
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
BtsIMutI CAGTG 2 cut(s) 140, 187
Cfr13I GGNCC 2 cut(s) 130, 248
CseI GACGC 1 cut(s) 287
CviAII CATG 2 cut(s) 266, 308
CviJI RGCY 3 cut(s) 197, 331, 395
CviKI_1 RGCY 3 cut(s) 197, 331, 395
DpnI GATC 1 cut(s) 142
DpnII GATC 1 cut(s) 140
Ecl136II GAGCTC 1 cut(s) 395
Eco24I GRGCYC 1 cut(s) 397
Eco47I GGWCC 2 cut(s) 130, 248
Eco53kI GAGCTC 1 cut(s) 395
Eco88I CYCGRG 1 cut(s) 159
EcoICRI GAGCTC 1 cut(s) 395
EcoO109I RGGNCCY 1 cut(s) 248
EcoT38I GRGCYC 1 cut(s) 397
FaeI CATG 2 cut(s) 269, 311
FaqI GGGAC 1 cut(s) 261
FatI CATG 2 cut(s) 265, 307
FauNDI CATATG 1 cut(s) 338
FriOI GRGCYC 1 cut(s) 397
HapII CCGG 1 cut(s) 390
HgaI GACGC 1 cut(s) 287
Hin1II CATG 2 cut(s) 269, 311
HinfI GANTC 2 cut(s) 59, 152
HpaII CCGG 1 cut(s) 390
Hpy166II GTNNAC 1 cut(s) 234
Hpy188III TCNNGA 1 cut(s) 149
Hpy8I GTNNAC 1 cut(s) 234
HpyAV CCTTC 1 cut(s) 238
HpyCH4IV ACGT 2 cut(s) 79, 376
HpyCH4V TGCA 3 cut(s) 176, 234, 355
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpySE526I ACGT 2 cut(s) 79, 376
Hsp92II CATG 2 cut(s) 269, 311
Kzo9I GATC 1 cut(s) 140
LmnI GCTCC 2 cut(s) 202, 392
LpnPI CCDG 6 cut(s) 129, 134, 146, 264, 331, 403
LweI GCATC 1 cut(s) 271
MaeII ACGT 2 cut(s) 79, 376
MaeIII GTNAC 1 cut(s) 113
MalI GATC 1 cut(s) 142
MboI GATC 1 cut(s) 140
MflI RGATCY 1 cut(s) 140
MhlI GDGCHC 3 cut(s) 236, 376, 397
MluCI AATT 3 cut(s) 11, 93, 207
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 410
MseI TTAA 6 cut(s) 44, 84, 203, 216, 258, 404
MslI CAYNNNNRTG 1 cut(s) 226
MspI CCGG 1 cut(s) 390
Mva1269I GAATGC 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeI CATATG 1 cut(s) 338
NdeII GATC 1 cut(s) 140
NlaIII CATG 2 cut(s) 269, 311
NlaIV GGNNCC 1 cut(s) 249
PctI GAATGC 1 cut(s) 176
PfeI GAWTC 1 cut(s) 152
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
Ppu21I YACGTR 1 cut(s) 377
PpuMI RGGWCCY 1 cut(s) 248
PsiI TTATAA 1 cut(s) 17
Psp124BI GAGCTC 1 cut(s) 397
Psp5II RGGWCCY 1 cut(s) 248
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 2 cut(s) 130, 248
PspPPI RGGWCCY 1 cut(s) 248
PsuI RGATCY 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 226
SacI GAGCTC 1 cut(s) 397
SaqAI TTAA 6 cut(s) 44, 84, 203, 216, 258, 404
Sau3AI GATC 1 cut(s) 140
Sau96I GGNCC 2 cut(s) 130, 248
SchI GAGTC 1 cut(s) 53
SduI GDGCHC 3 cut(s) 236, 376, 397
SetI ASST 6 cut(s) 82, 199, 239, 253, 379, 397
SfaNI GCATC 1 cut(s) 271
SinI GGWCC 2 cut(s) 130, 248
SmiMI CAYNNNNRTG 1 cut(s) 226
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 3 cut(s) 11, 93, 207
SstI GAGCTC 1 cut(s) 397
TaiI ACGT 2 cut(s) 82, 379
TaqI TCGA 1 cut(s) 155
TasI AATT 3 cut(s) 11, 93, 207
TfiI GAWTC 1 cut(s) 152
Tru1I TTAA 6 cut(s) 44, 84, 203, 216, 258, 404
Tru9I TTAA 6 cut(s) 44, 84, 203, 216, 258, 404
TscAI CASTG 2 cut(s) 140, 187
TspDTI ATGAA 1 cut(s) 341
TspRI CASTG 2 cut(s) 140, 187
VneI GTGCAC 1 cut(s) 232
VpaK11BI GGWCC 2 cut(s) 130, 248
XapI RAATTY 2 cut(s) 11, 93
XcmI CCANNNNNNNNNTGG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.