Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000986

Physical Location & Seq

Genomic Coordinates Reverse (-)

53958896 .. 53960214

Gene Structure 1319 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009525

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTCTTTCACCGCCAGTTGCTCTTGTGTGATCATCACCTTGGTCCTAGCAACCCTGACAATAACATATTCTGAAGCGACAGCTGTGCAATGGACTCACTGGCACAACGTTCACGTCGTCAATGGCTTTTCCCACAACGATAAGCCATTGATTGTTCATTGCCAATCTAAAAACGATGATCTTGGTGACCACACTCTATGGATCAATCAAGAGTTTCGCTGGCATTTCGGCCTGAACTTTTGGTTTACGACTCTCTTCTATTGCGATTTCAAATGGGATTCACAAGAGAAACACATCGACGTTTTCAATACTCCTGATGAAAGCCCCCTTGAGTGCATGGAAAATGAGGAGTGCTTTTGGTCATTGATCTCTTCTGGTCCAATTCGATTTGACTGCTCCATTGAGTTGTCTGAGTTTCACTCTGAAATTCTCTTCGCTCTACCCAATCAATCTTGGGTAGGTGGAGCTCGCTCGTTCATGGACTCGGCGGTGCTCGGTTGCGGTTTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

171

Amino Acids

19.6

Weight (kDa)

4.74

Isoelectric Point (pI)

59.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	36 - 130	3.2e-23	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11765 AT1G28305 AT1G28306 AT2G06090 AT2G23142 AT2G23148 AT2G24870 AT2G24880 AT3G10460 AT3G26860 AT3G26860 AT3G26870 AT3G26880 AT3G27329 AT3G27331 AT3G27680 AT4G10895 AT4G29037 AT5G04047 AT5G04347 AT5G04347 AT5G04350 AT5G27238 AT5G38435 AT5G38440
fragaria_vesca	FvH4_2g19740 FvH4_3g21860 FvH4_4g05400
malus_domestica	MD05G1181700.v1.1 MD13G1110700.v1.1
prunus_persica	Prupe.1G059400_v2.0.a1 Prupe.1G059600_v2.0.a1 Prupe.1G219300_v2.0.a1 Prupe.1G219600_v2.0.a1 Prupe.1G219700_v2.0.a1 Prupe.8G208500_v2.0.a1 Prupe.8G208600_v2.0.a1 Prupe.8G208800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396541 RchiOBHm_Chr4g0396551
rosa_laevigata	RLG00000009525 RLG00000009526 RLG00000012772 RLG00000013033
rosa_multiflora	Rmu_sc0001781.1_g000005 Rmu_sc0001781.1_g000008 Rmu_sc0002909.1_g000007
rosa_roxburghii	Rroxscaffold_5G00341400
rosa_rugosa	Rorug03G0349100 Rorug05G0091600 Rorug06G0160300
rosa_samantha	Rh4AG069600 Rh4AG069800 Rh4BG067300 Rh4BG067400 Rh4CG075200 Rh4CG075300 Rh4DG064800 Rh5BG181300 Rh5DG183000
rosa_wichuraiana	Rw4G005590 Rw5G016720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	12, 488, 501
AclI	AACGTT	1 cut(s)	108
AclWI	GGATC	1 cut(s)	209
AcsI	RAATTY	1 cut(s)	426
AcuI	CTGAAG	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	271, 307
AjiI	CACGTC	1 cut(s)	115
AluBI	AGCT	2 cut(s)	83, 467
AluI	AGCT	2 cut(s)	83, 467
Alw21I	GWGCWC	2 cut(s)	469, 495
AlwI	GGATC	1 cut(s)	209
AoxI	GGCC	1 cut(s)	229
ApoI	RAATTY	1 cut(s)	426
AspS9I	GGNCC	2 cut(s)	43, 377
AsuHPI	GGTGA	2 cut(s)	28, 197
AvaII	GGWCC	2 cut(s)	43, 377
BanII	GRGCYC	1 cut(s)	469
Bbv12I	GWGCWC	2 cut(s)	469, 495
BcgI	CGANNNNNNTGC	4 cut(s)	67, 101, 375, 409
BclI	TGATCA	1 cut(s)	30
BfaI	CTAG	2 cut(s)	47, 511
Bme18I	GGWCC	2 cut(s)	43, 377
BmgBI	CACGTC	1 cut(s)	115
BmgT120I	GGNCC	2 cut(s)	43, 377
BplI	GAGNNNNNCTC	2 cut(s)	404, 436
BpuEI	CTTGAG	1 cut(s)	350
BsaJI	CCNNGG	1 cut(s)	39
Bse1I	ACTGG	2 cut(s)	15, 104
Bse3DI	GCAATG	2 cut(s)	95, 157
BseDI	CCNNGG	1 cut(s)	39
BseMI	GCAATG	2 cut(s)	95, 157
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	2 cut(s)	15, 104
BseRI	GAGGAG	1 cut(s)	362
BshFI	GGCC	1 cut(s)	231
BsiHKAI	GWGCWC	2 cut(s)	469, 495
BsnI	GGCC	1 cut(s)	231
Bsp1286I	GDGCHC	2 cut(s)	469, 495
Bsp143I	GATC	4 cut(s)	30, 178, 201, 366
BspACI	CCGC	3 cut(s)	12, 488, 501
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	1 cut(s)	403
BspPI	GGATC	1 cut(s)	209
BsrDI	GCAATG	2 cut(s)	95, 157
BsrI	ACTGG	2 cut(s)	15, 104
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	4 cut(s)	30, 178, 201, 366
BssT1I	CCWWGG	1 cut(s)	39
Bst6I	CTCTTC	3 cut(s)	260, 376, 437
BstC8I	GCNNGC	2 cut(s)	221, 469
BstDEI	CTNAG	1 cut(s)	411
BstEII	GGTNACC	1 cut(s)	185
BstKTI	GATC	4 cut(s)	33, 181, 204, 369
BstMBI	GATC	4 cut(s)	30, 178, 201, 366
BstPI	GGTNACC	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	231
BtrI	CACGTC	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	97
Cac8I	GCNNGC	2 cut(s)	221, 469
Cfr13I	GGNCC	2 cut(s)	43, 377
CviAII	CATG	2 cut(s)	337, 478
CviJI	RGCY	6 cut(s)	83, 126, 145, 231, 324, 467
CviKI_1	RGCY	6 cut(s)	83, 126, 145, 231, 324, 467
DdeI	CTNAG	1 cut(s)	411
DpnI	GATC	4 cut(s)	32, 180, 203, 368
DpnII	GATC	4 cut(s)	30, 178, 201, 366
Eam1104I	CTCTTC	3 cut(s)	260, 376, 437
EarI	CTCTTC	3 cut(s)	260, 376, 437
Ecl136II	GAGCTC	1 cut(s)	467
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	469
Eco47I	GGWCC	2 cut(s)	43, 377
Eco53kI	GAGCTC	1 cut(s)	467
Eco57I	CTGAAG	1 cut(s)	93
Eco91I	GGTNACC	1 cut(s)	185
EcoICRI	GAGCTC	1 cut(s)	467
EcoO65I	GGTNACC	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	469
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	2 cut(s)	340, 481
FaiI	YATR	4 cut(s)	67, 199, 338, 479
FatI	CATG	2 cut(s)	336, 477
FbaI	TGATCA	1 cut(s)	30
FriOI	GRGCYC	1 cut(s)	469
FspBI	CTAG	2 cut(s)	47, 511
HaeIII	GGCC	1 cut(s)	231
Hin1II	CATG	2 cut(s)	340, 481
HinfI	GANTC	4 cut(s)	94, 250, 278, 482
HphI	GGTGA	2 cut(s)	28, 197
Hpy166II	GTNNAC	2 cut(s)	112, 246
Hpy188I	TCNGA	3 cut(s)	73, 412, 424
Hpy188III	TCNNGA	2 cut(s)	209, 314
Hpy8I	GTNNAC	2 cut(s)	112, 246
Hpy99I	CGWCG	2 cut(s)	119, 302
HpyCH4IV	ACGT	3 cut(s)	108, 114, 300
HpyCH4V	TGCA	2 cut(s)	88, 336
HpyF3I	CTNAG	1 cut(s)	411
HpySE526I	ACGT	3 cut(s)	108, 114, 300
Hsp92II	CATG	2 cut(s)	340, 481
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	4 cut(s)	30, 178, 201, 366
LmnI	GCTCC	2 cut(s)	401, 464
LpnPI	CCDG	7 cut(s)	28, 68, 85, 205, 245, 327, 360
MaeI	CTAG	2 cut(s)	47, 511
MaeII	ACGT	3 cut(s)	108, 114, 300
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	4 cut(s)	32, 180, 203, 368
MboI	GATC	4 cut(s)	30, 178, 201, 366
MboII	GAAGA	4 cut(s)	247, 363, 424, 499
MhlI	GDGCHC	2 cut(s)	469, 495
MluCI	AATT	2 cut(s)	381, 426
MlyI	GAGTC	3 cut(s)	88, 244, 476
MnlI	CCTC	1 cut(s)	340
MspA1I	CMGCKG	1 cut(s)	83
NdeII	GATC	4 cut(s)	30, 178, 201, 366
NlaIII	CATG	2 cut(s)	340, 481
NmeAIII	GCCGAG	1 cut(s)	464
NmuCI	GTSAC	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	278
PleI	GAGTC	3 cut(s)	88, 244, 476
PpsI	GAGTC	3 cut(s)	88, 244, 476
Psp124BI	GAGCTC	1 cut(s)	469
Psp1406I	AACGTT	1 cut(s)	108
PspEI	GGTNACC	1 cut(s)	185
PspPI	GGNCC	2 cut(s)	43, 377
PvuII	CAGCTG	1 cut(s)	83
SacI	GAGCTC	1 cut(s)	469
Sau3AI	GATC	4 cut(s)	30, 178, 201, 366
Sau96I	GGNCC	2 cut(s)	43, 377
SchI	GAGTC	3 cut(s)	88, 244, 476
SduI	GDGCHC	2 cut(s)	469, 495
SetI	ASST	7 cut(s)	41, 85, 111, 117, 303, 463, 469
SinI	GGWCC	2 cut(s)	43, 377
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	2 cut(s)	381, 426
SsiI	CCGC	3 cut(s)	12, 488, 501
SspMI	CTAG	2 cut(s)	47, 511
SstI	GAGCTC	1 cut(s)	469
StyI	CCWWGG	1 cut(s)	39
TaiI	ACGT	3 cut(s)	111, 117, 303
TaqI	TCGA	2 cut(s)	297, 385
TasI	AATT	2 cut(s)	381, 426
TfiI	GAWTC	1 cut(s)	278
TscAI	CASTG	1 cut(s)	104
TseFI	GTSAC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	3 cut(s)	146, 333, 466
TspRI	CASTG	1 cut(s)	104
VpaK11BI	GGWCC	2 cut(s)	43, 377
XapI	RAATTY	1 cut(s)	426
XspI	CTAG	2 cut(s)	47, 511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.