RchiOBHm_Chr4g0396551

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000986
Physical Location & Seq
Forward (+)
12694674 .. 12695108
435 bp
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UTR
Exon/CDS
Intron
PRQ36892

Sequence Viewer

Length: 435 bp
ATGTCTTTCACCGCCAGTTGCTCTTGTGTGATCATCACCTTGGTCCTAGCAACCCTGACAATAACATATTCTGAAGCGACAGCTGTGAAATGGACTCACTGGCACAACGTTCACGTCGTCAATGGCTTTTCCCGCAACGATGAGCCATTGATTGTTCATTGCAAATCTAAAAACGATGATCTTGGTGACCACACACTATGGATTAATCAAGAGTTTCGCTGGTATTTCGGCCTGAACTTTTGGTTTACGACTCTCTTCTATTGCAATTTCAAATGGGATTCACAAGAGAAACACATCGACGTTTTCAATACTCCTGATGAAAGCCCCCTTGAGTGCATGGAAAATGAGGAGTGCTTTTGGAAAGTGACTGAGGATGGTTTCTTTGTTAGCGTTGATAATATAAACTGGGTTAAAAAGTTGAATTGGCATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

144

Amino Acids

17.11

Weight (kDa)

4.97

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 36 - 142 6.8e-26 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 12, 133
AclI AACGTT 1 cut(s) 108
AcuI CTGAAG 1 cut(s) 93
AgsI TTSAA 3 cut(s) 271, 307, 421
AjiI CACGTC 1 cut(s) 115
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
AoxI GGCC 1 cut(s) 229
AseI ATTAAT 1 cut(s) 204
AspS9I GGNCC 1 cut(s) 43
AsuHPI GGTGA 2 cut(s) 28, 197
AvaII GGWCC 1 cut(s) 43
BccI CCATC 1 cut(s) 368
BclI TGATCA 1 cut(s) 30
BfaI CTAG 2 cut(s) 47, 433
Bme18I GGWCC 1 cut(s) 43
BmgBI CACGTC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 43
BmrI ACTGGG 1 cut(s) 415
BmuI ACTGGG 1 cut(s) 415
BpuEI CTTGAG 1 cut(s) 350
BsaJI CCNNGG 1 cut(s) 39
Bse1I ACTGG 3 cut(s) 15, 104, 410
Bse3DI GCAATG 1 cut(s) 157
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 379
BseMI GCAATG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 360
BseNI ACTGG 3 cut(s) 15, 104, 410
BseRI GAGGAG 1 cut(s) 362
BshFI GGCC 1 cut(s) 231
BsnI GGCC 1 cut(s) 231
Bsp143I GATC 2 cut(s) 30, 178
BspACI CCGC 2 cut(s) 12, 133
BspANI GGCC 1 cut(s) 231
BspCNI CTCAG 1 cut(s) 361
BsrDI GCAATG 1 cut(s) 157
BsrI ACTGG 3 cut(s) 15, 104, 410
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 2 cut(s) 30, 178
BssT1I CCWWGG 1 cut(s) 39
Bst6I CTCTTC 1 cut(s) 260
BstDEI CTNAG 1 cut(s) 369
BstEII GGTNACC 1 cut(s) 185
BstF5I GGATG 1 cut(s) 379
BstKTI GATC 2 cut(s) 33, 181
BstMBI GATC 2 cut(s) 30, 178
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstPI GGTNACC 1 cut(s) 185
BsuRI GGCC 1 cut(s) 231
BtrI CACGTC 1 cut(s) 115
BtsCI GGATG 1 cut(s) 379
BtsIMutI CAGTG 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 43
CviAII CATG 2 cut(s) 337, 428
CviJI RGCY 5 cut(s) 83, 126, 145, 231, 324
CviKI_1 RGCY 5 cut(s) 83, 126, 145, 231, 324
DdeI CTNAG 1 cut(s) 369
DpnI GATC 2 cut(s) 32, 180
DpnII GATC 2 cut(s) 30, 178
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Eco130I CCWWGG 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 93
Eco91I GGTNACC 1 cut(s) 185
EcoO65I GGTNACC 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 2 cut(s) 340, 431
FaiI YATR 5 cut(s) 67, 199, 338, 401, 429
FatI CATG 2 cut(s) 336, 427
FauI CCCGC 1 cut(s) 140
FbaI TGATCA 1 cut(s) 30
FokI GGATG 1 cut(s) 386
FspBI CTAG 2 cut(s) 47, 433
HaeIII GGCC 1 cut(s) 231
Hin1II CATG 2 cut(s) 340, 431
HinfI GANTC 3 cut(s) 94, 250, 278
HphI GGTGA 2 cut(s) 28, 197
Hpy166II GTNNAC 2 cut(s) 112, 246
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 2 cut(s) 209, 314
Hpy8I GTNNAC 2 cut(s) 112, 246
Hpy99I CGWCG 2 cut(s) 119, 302
HpyCH4IV ACGT 3 cut(s) 108, 114, 300
HpyCH4V TGCA 3 cut(s) 162, 264, 336
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 1 cut(s) 369
HpySE526I ACGT 3 cut(s) 108, 114, 300
Hsp92II CATG 2 cut(s) 340, 431
Ksp22I TGATCA 1 cut(s) 30
Kzo9I GATC 2 cut(s) 30, 178
LpnPI CCDG 7 cut(s) 28, 68, 85, 205, 245, 327, 391
MaeI CTAG 2 cut(s) 47, 433
MaeII ACGT 3 cut(s) 108, 114, 300
MaeIII GTNAC 2 cut(s) 185, 364
MalI GATC 2 cut(s) 32, 180
MboI GATC 2 cut(s) 30, 178
MboII GAAGA 1 cut(s) 247
MluCI AATT 2 cut(s) 265, 421
MlyI GAGTC 2 cut(s) 88, 244
MnlI CCTC 2 cut(s) 340, 364
MseI TTAA 2 cut(s) 204, 411
MspA1I CMGCKG 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 132
NdeII GATC 2 cut(s) 30, 178
NlaIII CATG 2 cut(s) 340, 431
NmuCI GTSAC 2 cut(s) 185, 364
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 1 cut(s) 278
PleI GAGTC 2 cut(s) 88, 244
PpsI GAGTC 2 cut(s) 88, 244
PshBI ATTAAT 1 cut(s) 204
Psp1406I AACGTT 1 cut(s) 108
PspEI GGTNACC 1 cut(s) 185
PspPI GGNCC 1 cut(s) 43
PvuII CAGCTG 1 cut(s) 83
SaqAI TTAA 2 cut(s) 204, 411
Sau3AI GATC 2 cut(s) 30, 178
Sau96I GGNCC 1 cut(s) 43
SchI GAGTC 2 cut(s) 88, 244
SetI ASST 5 cut(s) 41, 85, 111, 117, 303
SinI GGWCC 1 cut(s) 43
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 2 cut(s) 265, 421
SsiI CCGC 2 cut(s) 12, 133
SspMI CTAG 2 cut(s) 47, 433
StyI CCWWGG 1 cut(s) 39
TaiI ACGT 3 cut(s) 111, 117, 303
TaqI TCGA 1 cut(s) 297
TasI AATT 2 cut(s) 265, 421
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 2 cut(s) 204, 411
Tru9I TTAA 2 cut(s) 204, 411
TscAI CASTG 1 cut(s) 104
TseFI GTSAC 2 cut(s) 185, 364
Tsp45I GTSAC 2 cut(s) 185, 364
TspDTI ATGAA 2 cut(s) 146, 333
TspRI CASTG 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 43
VspI ATTAAT 1 cut(s) 204
XspI CTAG 2 cut(s) 47, 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.