Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000986

Physical Location & Seq

Genomic Coordinates Forward (+)

20286070 .. 20287605

Gene Structure 1536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG183000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGCAAACATTTTGTCTTGCGAGCCCGGAGTCTACTGCTCCGACCCCGGGTGGAGAGAGTGACTGGTGGACACCTAGACCCGGTAAAAAGTATTTTGTGCGGATTGTGAACGACCTCAATAAACAGAAACTCGACTATCCTTGTAAATCTGCAGACGATGATCTCGGACTTCGTAGTCTTCCTCATCAAGCGCAGTACGAATTTGGATTTAGGCTCAACTTCGCAGAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

77

Amino Acids

8.81

Weight (kDa)

5.67

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	33 - 75	6.5e-08	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11765 AT1G28305 AT1G28306 AT2G06090 AT2G23142 AT2G23148 AT2G24870 AT2G24880 AT3G10460 AT3G26860 AT3G26860 AT3G26870 AT3G26880 AT3G27329 AT3G27331 AT3G27680 AT4G10895 AT4G29037 AT5G04047 AT5G04347 AT5G04347 AT5G04350 AT5G27238 AT5G38435 AT5G38440
fragaria_vesca	FvH4_2g19740 FvH4_3g21860 FvH4_4g05400
malus_domestica	MD05G1181700.v1.1 MD13G1110700.v1.1
prunus_persica	Prupe.1G059400_v2.0.a1 Prupe.1G059600_v2.0.a1 Prupe.1G219300_v2.0.a1 Prupe.1G219600_v2.0.a1 Prupe.1G219700_v2.0.a1 Prupe.8G208500_v2.0.a1 Prupe.8G208600_v2.0.a1 Prupe.8G208800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396541 RchiOBHm_Chr4g0396551
rosa_laevigata	RLG00000009525 RLG00000009526 RLG00000012772 RLG00000013033
rosa_multiflora	Rmu_sc0001781.1_g000005 Rmu_sc0001781.1_g000008 Rmu_sc0002909.1_g000007
rosa_roxburghii	Rroxscaffold_5G00341400
rosa_rugosa	Rorug03G0349100 Rorug05G0091600 Rorug06G0160300
rosa_samantha	Rh4AG069600 Rh4AG069800 Rh4BG067300 Rh4BG067400 Rh4CG075200 Rh4CG075300 Rh4DG064800 Rh5BG181300 Rh5DG183000
rosa_wichuraiana	Rw4G005590 Rw5G016720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	174
AccI	GTMKAC	1 cut(s)	32
AciI	CCGC	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	200
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	2 cut(s)	47, 80
Ama87I	CYCGRG	1 cut(s)	46
ApoI	RAATTY	1 cut(s)	200
ArsI	GACNNNNNNTTYG	1 cut(s)	30
AspLEI	GCGC	1 cut(s)	193
AsuC2I	CCSGG	4 cut(s)	26, 47, 48, 81
AvaI	CYCGRG	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	170
BcnI	CCSGG	4 cut(s)	26, 47, 48, 81
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	150
Bme1390I	CCNGG	4 cut(s)	26, 47, 48, 81
BmeT110I	CYCGRG	1 cut(s)	46
BmrFI	CCNGG	4 cut(s)	26, 47, 48, 81
BpiI	GAAGAC	1 cut(s)	170
BpuMI	CCSGG	4 cut(s)	26, 47, 48, 81
BsaJI	CCNNGG	2 cut(s)	45, 46
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 80
Bse1I	ACTGG	1 cut(s)	68
BseDI	CCNNGG	2 cut(s)	45, 46
BseLI	CCNNNNNNNGG	2 cut(s)	47, 80
BseNI	ACTGG	1 cut(s)	68
BsiHKCI	CYCGRG	1 cut(s)	46
BsiSI	CCGG	3 cut(s)	26, 47, 81
BslI	CCNNNNNNNGG	2 cut(s)	47, 80
BsoBI	CYCGRG	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	1 cut(s)	160
BspACI	CCGC	1 cut(s)	100
BspMAI	CTGCAG	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	68
BssECI	CCNNGG	2 cut(s)	45, 46
BssMI	GATC	1 cut(s)	160
BstC8I	GCNNGC	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	160
BstSCI	CCNGG	4 cut(s)	24, 45, 46, 79
BstSFI	CTRYAG	1 cut(s)	150
BstV2I	GAAGAC	1 cut(s)	170
Cac8I	GCNNGC	1 cut(s)	22
CfoI	GCGC	1 cut(s)	193
Cfr9I	CCCGGG	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	196
CviJI	RGCY	2 cut(s)	24, 214
CviKI_1	RGCY	2 cut(s)	24, 214
CviQI	GTAC	1 cut(s)	196
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
DrdI	GACNNNNNNGTC	1 cut(s)	174
DseDI	GACNNNNNNGTC	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	26
Eco88I	CYCGRG	1 cut(s)	46
EcoT38I	GRGCYC	1 cut(s)	26
FblI	GTMKAC	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	26
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	1 cut(s)	192
HapII	CCGG	3 cut(s)	26, 47, 81
HhaI	GCGC	1 cut(s)	193
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	3 cut(s)	26, 47, 81
Hpy166II	GTNNAC	3 cut(s)	33, 69, 109
Hpy188I	TCNGA	2 cut(s)	42, 167
Hpy8I	GTNNAC	3 cut(s)	33, 69, 109
HpyCH4V	TGCA	2 cut(s)	4, 152
HspAI	GCGC	1 cut(s)	191
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	4 cut(s)	39, 49, 60, 94
MaeI	CTAG	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	1 cut(s)	170
MhlI	GDGCHC	1 cut(s)	26
MluCI	AATT	1 cut(s)	200
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	2 cut(s)	125, 192
MspI	CCGG	3 cut(s)	26, 47, 81
MspR9I	CCNGG	4 cut(s)	26, 47, 48, 81
NciI	CCSGG	4 cut(s)	26, 47, 48, 81
NdeII	GATC	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	59
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PstI	CTGCAG	1 cut(s)	154
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
Sau3AI	GATC	1 cut(s)	160
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	4 cut(s)	26, 47, 48, 81
SduI	GDGCHC	1 cut(s)	26
SetI	ASST	2 cut(s)	76, 117
SfcI	CTRYAG	1 cut(s)	150
SmaI	CCCGGG	1 cut(s)	48
Sse9I	AATT	1 cut(s)	200
SsiI	CCGC	1 cut(s)	100
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	4 cut(s)	24, 45, 46, 79
TaqI	TCGA	1 cut(s)	132
TasI	AATT	1 cut(s)	200
TseFI	GTSAC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	59
TspMI	CCCGGG	1 cut(s)	46
XapI	RAATTY	1 cut(s)	200
XmaI	CCCGGG	1 cut(s)	46
XmiI	GTMKAC	1 cut(s)	32
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.