Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000986

Physical Location & Seq

Genomic Coordinates Forward (+)

42584577 .. 42585218

Gene Structure 642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0349100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGAAAAATTATAGGTCGGGGACTATGTTTCAGGCAATGAATTTAGGGTCAGTTTCATGTTATGCTGAGACCACCGAAGTGTACACTCCTCAAGTAGCGGATGAGTTGAAGCCTACAAAAAACGGTGAATTTAGAACACTAGATGAGATTTTTGAATTTTACAACAAGTATGCTTTTGAAGCTGGGTTTAGTGTTCGGAGAAGTTCTACTGCCAAGAGTAAAGATGGTTCTGAAACTATAAGACAAGAACTTTGTTGTCGCAAAGAAGGGCATTCACAGAAACATACGGCTCTGCCAAAAAAGCGGAAAGGGATCATAAGAACGGGTTGTCTAGCAAAGATTGCAGCTGTGAAGAGATGTCGCATATATGTAATCACTCAATTTACGGAGGCTCATAACCATCCTTTGACAACTCTTGAGAGAGTTCATTTGTTACCATCTCATCATCAAGTTTCAAATGCTACCAAATGCTTAACCATGGAACTTGGACTGGTAAATATTAATCCAAGCCACCAACAAATCAGTTTGCTTGAAGTTCATTCGAGAGGAATTGAGAATATGGGTTGCACAGGGAAAGATATATACAATTATGAAAGAGATAAGCGAGAAGAGTTGAAAGGACATGATGGAGATATGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

213

Amino Acids

24.23

Weight (kDa)

8.91

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	52 - 137	1.6e-17	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11765 AT1G28305 AT1G28306 AT2G06090 AT2G23142 AT2G23148 AT2G24870 AT2G24880 AT3G10460 AT3G26860 AT3G26860 AT3G26870 AT3G26880 AT3G27329 AT3G27331 AT3G27680 AT4G10895 AT4G29037 AT5G04047 AT5G04347 AT5G04347 AT5G04350 AT5G27238 AT5G38435 AT5G38440
fragaria_vesca	FvH4_2g19740 FvH4_3g21860 FvH4_4g05400
malus_domestica	MD05G1181700.v1.1 MD13G1110700.v1.1
prunus_persica	Prupe.1G059400_v2.0.a1 Prupe.1G059600_v2.0.a1 Prupe.1G219300_v2.0.a1 Prupe.1G219600_v2.0.a1 Prupe.1G219700_v2.0.a1 Prupe.8G208500_v2.0.a1 Prupe.8G208600_v2.0.a1 Prupe.8G208800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396541 RchiOBHm_Chr4g0396551
rosa_laevigata	RLG00000009525 RLG00000009526 RLG00000012772 RLG00000013033
rosa_multiflora	Rmu_sc0001781.1_g000005 Rmu_sc0001781.1_g000008 Rmu_sc0002909.1_g000007
rosa_roxburghii	Rroxscaffold_5G00341400
rosa_rugosa	Rorug03G0349100 Rorug05G0091600 Rorug06G0160300
rosa_samantha	Rh4AG069600 Rh4AG069800 Rh4BG067300 Rh4BG067400 Rh4CG075200 Rh4CG075300 Rh4DG064800 Rh5BG181300 Rh5DG183000
rosa_wichuraiana	Rw4G005590 Rw5G016720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	98, 304
AclWI	GGATC	1 cut(s)	320
AcsI	RAATTY	3 cut(s)	40, 128, 155
AfaI	GTAC	1 cut(s)	83
AgsI	TTSAA	6 cut(s)	109, 155, 179, 456, 533, 616
AleI	CACNNNNGTG	1 cut(s)	77
AluBI	AGCT	2 cut(s)	182, 347
AluI	AGCT	2 cut(s)	182, 347
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	1 cut(s)	320
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	3 cut(s)	40, 128, 155
ArsI	GACNNNNNNTTYG	2 cut(s)	234, 266
AseI	ATTAAT	1 cut(s)	501
AsuHPI	GGTGA	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	356
BccI	CCATC	4 cut(s)	218, 408, 445, 620
BceAI	ACGGC	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	2 cut(s)	140, 332
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
BpuEI	CTTGAG	2 cut(s)	75, 437
BsaI	GGTCTC	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	477
Bse1I	ACTGG	1 cut(s)	495
Bse3DI	GCAATG	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	477
BseGI	GGATG	2 cut(s)	106, 400
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	495
BseRI	GAGGAG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	356
BseYI	CCCAGC	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	271
Bso31I	GGTCTC	1 cut(s)	62
Bsp1407I	TGTACA	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	312
Bsp19I	CCATGG	1 cut(s)	477
BspACI	CCGC	2 cut(s)	98, 304
BspCNI	CTCAG	1 cut(s)	58
BspPI	GGATC	1 cut(s)	320
BspTNI	GGTCTC	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	42
BsrGI	TGTACA	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	495
BssECI	CCNNGG	1 cut(s)	477
BssMI	GATC	1 cut(s)	312
BssT1I	CCWWGG	1 cut(s)	477
Bst4CI	ACNGT	1 cut(s)	125
Bst6I	CTCTTC	2 cut(s)	347, 603
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstAUI	TGTACA	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	66
BstDSI	CCRYGG	1 cut(s)	477
BstF5I	GGATG	2 cut(s)	106, 400
BstKTI	GATC	1 cut(s)	315
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	1 cut(s)	312
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 301, 341
BstV1I	GCAGC	1 cut(s)	356
BtgI	CCRYGG	1 cut(s)	477
BtsCI	GGATG	2 cut(s)	106, 400
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	3 cut(s)	57, 478, 623
CviJI	RGCY	6 cut(s)	112, 182, 290, 347, 392, 510
CviKI_1	RGCY	6 cut(s)	112, 182, 290, 347, 392, 510
CviQI	GTAC	1 cut(s)	82
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
Eam1104I	CTCTTC	2 cut(s)	347, 603
EarI	CTCTTC	2 cut(s)	347, 603
Eco130I	CCWWGG	1 cut(s)	477
Eco31I	GGTCTC	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	477
FaeI	CATG	3 cut(s)	60, 481, 626
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	3 cut(s)	56, 477, 622
Fnu4HI	GCNGC	1 cut(s)	345
FokI	GGATG	2 cut(s)	113, 387
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	2 cut(s)	140, 332
GluI	GCNGC	1 cut(s)	345
GsaI	CCCAGC	1 cut(s)	186
Hin1II	CATG	3 cut(s)	60, 481, 626
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	2 cut(s)	82, 84
Hpy188I	TCNGA	2 cut(s)	198, 232
Hpy188III	TCNNGA	2 cut(s)	416, 543
Hpy8I	GTNNAC	2 cut(s)	82, 84
HpyAV	CCTTC	1 cut(s)	260
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4V	TGCA	2 cut(s)	344, 567
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 301, 341
HpyF3I	CTNAG	1 cut(s)	66
Hsp92II	CATG	3 cut(s)	60, 481, 626
Kzo9I	GATC	1 cut(s)	312
LpnPI	CCDG	4 cut(s)	17, 168, 476, 555
Lsp1109I	GCAGC	1 cut(s)	356
MaeI	CTAG	2 cut(s)	140, 332
MaeIII	GTNAC	1 cut(s)	432
MalI	GATC	1 cut(s)	314
MboI	GATC	1 cut(s)	312
MboII	GAAGA	2 cut(s)	364, 620
MluCI	AATT	7 cut(s)	7, 40, 128, 155, 380, 549, 586
MnlI	CCTC	3 cut(s)	99, 382, 539
MseI	TTAA	2 cut(s)	473, 501
MslI	CAYNNNNRTG	1 cut(s)	77
MspA1I	CMGCKG	1 cut(s)	347
Mva1269I	GAATGC	1 cut(s)	271
MwoI	GCNNNNNNNGC	3 cut(s)	179, 301, 341
NcoI	CCATGG	1 cut(s)	477
NdeII	GATC	1 cut(s)	312
NlaIII	CATG	3 cut(s)	60, 481, 626
OliI	CACNNNNGTG	1 cut(s)	77
PctI	GAATGC	1 cut(s)	271
PkrI	GCNGC	1 cut(s)	346
PshBI	ATTAAT	1 cut(s)	501
PspFI	CCCAGC	1 cut(s)	182
PsrI	GAACNNNNNNTAC	2 cut(s)	211, 243
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
RseI	CAYNNNNRTG	1 cut(s)	77
SaqAI	TTAA	2 cut(s)	473, 501
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	1 cut(s)	312
SetI	ASST	3 cut(s)	17, 184, 349
SmiMI	CAYNNNNRTG	1 cut(s)	77
SmlI	CTYRAG	2 cut(s)	90, 416
SmoI	CTYRAG	2 cut(s)	90, 416
Sse9I	AATT	7 cut(s)	7, 40, 128, 155, 380, 549, 586
SsiI	CCGC	2 cut(s)	98, 304
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	2 cut(s)	140, 332
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	1 cut(s)	125
TaqI	TCGA	1 cut(s)	542
TasI	AATT	7 cut(s)	7, 40, 128, 155, 380, 549, 586
TatI	WGTACW	1 cut(s)	81
Tru1I	TTAA	2 cut(s)	473, 501
Tru9I	TTAA	2 cut(s)	473, 501
TseI	GCWGC	1 cut(s)	344
TspDTI	ATGAA	6 cut(s)	17, 45, 53, 416, 527, 606
TspGWI	ACGGA	1 cut(s)	401
VspI	ATTAAT	1 cut(s)	501
XapI	RAATTY	3 cut(s)	40, 128, 155
XspI	CTAG	2 cut(s)	140, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.