Prupe.8G208800_v2.0.a1

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000986
Physical Location & Seq
Forward (+)
19417881 .. 19418255
375 bp
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UTR
Exon/CDS
Intron
Prupe.8G208800.1

Sequence Viewer

Length: 375 bp
TGTCTGATGAGCCAAACACTAGTCACTGATTCACTATTCGACAAGATACGGGTGCATGTTGTCAACAGCTTCCAAAACGAGACTCTCGAAGTTCATTGTAAATCCAAGGACGATGATCTCGGGCTTCACCATATCCCCGCGAATCAGGAATTCAATTGGCATTTTCGGATTGCCATTTTTAAGAGAACTCTCTTCTTCTGCGATACGTGGTGGAGGGGTGGAAAAGCTAGTTTCCATGCCTTTTCTGCCGAAGAAGGTTTTCTCAAGTTTTGTGGTGATGGAGATTGCATGTGGAGAGCAAATGAAGATGGGATGTCCTTGCTTGATTGTCACCACCAACAATATCATCTCATGCATAGATGGGAATCATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

125

Amino Acids

14.62

Weight (kDa)

6.02

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 140
AciI CCGC 1 cut(s) 138
AcsI RAATTY 1 cut(s) 149
AgsI TTSAA 1 cut(s) 154
AhlI ACTAGT 1 cut(s) 19
AluBI AGCT 2 cut(s) 69, 227
AluI AGCT 2 cut(s) 69, 227
Alw26I GTCTC 1 cut(s) 74
Ama87I CYCGRG 1 cut(s) 119
ApoI RAATTY 1 cut(s) 149
Asp700I GAANNNNTTC 1 cut(s) 258
AsuHPI GGTGA 3 cut(s) 119, 287, 323
AvaI CYCGRG 1 cut(s) 119
BccI CCATC 3 cut(s) 272, 302, 354
BcoDI GTCTC 1 cut(s) 74
BcuI ACTAGT 1 cut(s) 19
BfaI CTAG 2 cut(s) 20, 228
BmeT110I CYCGRG 1 cut(s) 119
BpuEI CTTGAG 1 cut(s) 248
BsaAI YACGTR 1 cut(s) 207
BsaBI GATNNNNATC 1 cut(s) 364
BsaJI CCNNGG 1 cut(s) 105
Bse8I GATNNNNATC 1 cut(s) 364
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 2 cut(s) 318, 368
BseJI GATNNNNATC 1 cut(s) 364
Bsh1236I CGCG 1 cut(s) 140
BsiHKCI CYCGRG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 119
Bsp143I GATC 1 cut(s) 115
BspACI CCGC 1 cut(s) 138
BspFNI CGCG 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 1 cut(s) 115
BssT1I CCWWGG 1 cut(s) 105
Bst6I CTCTTC 1 cut(s) 197
BstBAI YACGTR 1 cut(s) 207
BstF5I GGATG 2 cut(s) 318, 368
BstFNI CGCG 1 cut(s) 140
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 1 cut(s) 115
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNSI RCATGY 2 cut(s) 59, 292
BstUI CGCG 1 cut(s) 140
BtsCI GGATG 2 cut(s) 318, 368
BtsIMutI CAGTG 1 cut(s) 24
CspCI CAANNNNNGTGG 2 cut(s) 253, 288
CviAII CATG 4 cut(s) 56, 236, 289, 352
CviJI RGCY 4 cut(s) 12, 69, 124, 227
CviKI_1 RGCY 4 cut(s) 12, 69, 124, 227
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 105
Eco88I CYCGRG 1 cut(s) 119
EcoRI GAATTC 1 cut(s) 149
EcoT14I CCWWGG 1 cut(s) 105
EcoT22I ATGCAT 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 4 cut(s) 59, 239, 292, 355
FaiI YATR 6 cut(s) 57, 132, 237, 290, 353, 357
FatI CATG 4 cut(s) 55, 235, 288, 351
FauI CCCGC 1 cut(s) 145
FokI GGATG 2 cut(s) 325, 355
FspBI CTAG 2 cut(s) 20, 228
Hin1II CATG 4 cut(s) 59, 239, 292, 355
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 4 cut(s) 29, 82, 142, 365
HphI GGTGA 3 cut(s) 119, 287, 323
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 2 cut(s) 6, 168
Hpy188III TCNNGA 2 cut(s) 86, 146
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 1 cut(s) 248
HpyCH4IV ACGT 1 cut(s) 206
HpyCH4V TGCA 3 cut(s) 55, 288, 355
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpySE526I ACGT 1 cut(s) 206
Hsp92II CATG 4 cut(s) 59, 239, 292, 355
Kzo9I GATC 1 cut(s) 115
LpnPI CCDG 1 cut(s) 131
MaeI CTAG 2 cut(s) 20, 228
MaeII ACGT 1 cut(s) 206
MaeIII GTNAC 2 cut(s) 22, 329
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 4 cut(s) 184, 187, 263, 317
MfeI CAATTG 1 cut(s) 154
MluCI AATT 2 cut(s) 149, 154
MlyI GAGTC 1 cut(s) 76
MnlI CCTC 1 cut(s) 207
Mph1103I ATGCAT 1 cut(s) 357
MroXI GAANNNNTTC 1 cut(s) 258
MseI TTAA 1 cut(s) 180
MunI CAATTG 1 cut(s) 154
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 245
NdeII GATC 1 cut(s) 115
NlaIII CATG 4 cut(s) 59, 239, 292, 355
NmuCI GTSAC 2 cut(s) 22, 329
NsiI ATGCAT 1 cut(s) 357
NspI RCATGY 2 cut(s) 59, 292
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 258
PfeI GAWTC 3 cut(s) 29, 142, 365
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
Ppu21I YACGTR 1 cut(s) 207
SaqAI TTAA 1 cut(s) 180
Sau3AI GATC 1 cut(s) 115
SchI GAGTC 1 cut(s) 76
SetI ASST 4 cut(s) 71, 209, 229, 259
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
SpeI ACTAGT 1 cut(s) 19
Sse9I AATT 2 cut(s) 149, 154
SsiI CCGC 1 cut(s) 138
SspMI CTAG 2 cut(s) 20, 228
StyI CCWWGG 1 cut(s) 105
TaiI ACGT 1 cut(s) 209
TaqI TCGA 2 cut(s) 39, 87
TasI AATT 2 cut(s) 149, 154
TfiI GAWTC 3 cut(s) 29, 142, 365
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 2 cut(s) 22, 329
Tsp45I GTSAC 2 cut(s) 22, 329
TspDTI ATGAA 2 cut(s) 83, 318
TspRI CASTG 1 cut(s) 31
XapI RAATTY 1 cut(s) 149
XceI RCATGY 2 cut(s) 59, 292
XmnI GAANNNNTTC 1 cut(s) 258
XspI CTAG 2 cut(s) 20, 228
Zsp2I ATGCAT 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.