Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Self-incomp_S1 | PF05938 | 23 - 113 | 4e-19 | Plant self-incompatibility protein S1 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 257 |
| AcoI | YGGCCR | 1 cut(s) | 46 |
| AcuI | CTGAAG | 1 cut(s) | 189 |
| AfeI | AGCGCT | 1 cut(s) | 61 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 161 |
| AgsI | TTSAA | 1 cut(s) | 175 |
| AluBI | AGCT | 2 cut(s) | 33, 269 |
| AluI | AGCT | 2 cut(s) | 33, 269 |
| AlwI | GGATC | 1 cut(s) | 257 |
| Aor51HI | AGCGCT | 1 cut(s) | 61 |
| AoxI | GGCC | 1 cut(s) | 46 |
| AseI | ATTAAT | 1 cut(s) | 146 |
| AspLEI | GCGC | 1 cut(s) | 62 |
| AspS9I | GGNCC | 1 cut(s) | 140 |
| AvaII | GGWCC | 1 cut(s) | 140 |
| BalI | TGGCCA | 1 cut(s) | 48 |
| BccI | CCATC | 2 cut(s) | 206, 239 |
| BfaI | CTAG | 1 cut(s) | 57 |
| BfoI | RGCGCY | 1 cut(s) | 63 |
| Bme18I | GGWCC | 1 cut(s) | 140 |
| BmgT120I | GGNCC | 1 cut(s) | 140 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 161 |
| BseGI | GGATG | 1 cut(s) | 114 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 161 |
| BseMII | CTCAG | 1 cut(s) | 261 |
| Bsh1285I | CGRYCG | 1 cut(s) | 159 |
| BshFI | GGCC | 1 cut(s) | 48 |
| BsiEI | CGRYCG | 1 cut(s) | 159 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 161 |
| BsnI | GGCC | 1 cut(s) | 48 |
| Bsp143I | GATC | 2 cut(s) | 156, 249 |
| BspANI | GGCC | 1 cut(s) | 48 |
| BspCNI | CTCAG | 1 cut(s) | 262 |
| BspPI | GGATC | 1 cut(s) | 257 |
| BssMI | GATC | 2 cut(s) | 156, 249 |
| Bst4CI | ACNGT | 1 cut(s) | 200 |
| BstDEI | CTNAG | 1 cut(s) | 270 |
| BstF5I | GGATG | 1 cut(s) | 114 |
| BstH2I | RGCGCY | 1 cut(s) | 63 |
| BstHHI | GCGC | 1 cut(s) | 62 |
| BstKTI | GATC | 2 cut(s) | 159, 252 |
| BstMBI | GATC | 2 cut(s) | 156, 249 |
| BstMCI | CGRYCG | 1 cut(s) | 159 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 45 |
| BstX2I | RGATCY | 1 cut(s) | 249 |
| BstYI | RGATCY | 1 cut(s) | 249 |
| BsuRI | GGCC | 1 cut(s) | 48 |
| BtsCI | GGATG | 1 cut(s) | 114 |
| BtsIMutI | CAGTG | 1 cut(s) | 205 |
| CfoI | GCGC | 1 cut(s) | 62 |
| Cfr13I | GGNCC | 1 cut(s) | 140 |
| CviAII | CATG | 1 cut(s) | 50 |
| CviJI | RGCY | 3 cut(s) | 33, 48, 269 |
| CviKI_1 | RGCY | 3 cut(s) | 33, 48, 269 |
| DdeI | CTNAG | 1 cut(s) | 270 |
| DpnI | GATC | 2 cut(s) | 158, 251 |
| DpnII | GATC | 2 cut(s) | 156, 249 |
| DraI | TTTAAA | 1 cut(s) | 190 |
| EaeI | YGGCCR | 1 cut(s) | 46 |
| Eco47I | GGWCC | 1 cut(s) | 140 |
| Eco47III | AGCGCT | 1 cut(s) | 61 |
| Eco57I | CTGAAG | 1 cut(s) | 189 |
| FaeI | CATG | 1 cut(s) | 53 |
| FaiI | YATR | 6 cut(s) | 41, 51, 106, 137, 168, 223 |
| FatI | CATG | 1 cut(s) | 49 |
| FokI | GGATG | 1 cut(s) | 121 |
| FspBI | CTAG | 1 cut(s) | 57 |
| GlaI | GCGC | 1 cut(s) | 61 |
| HaeII | RGCGCY | 1 cut(s) | 63 |
| HaeIII | GGCC | 1 cut(s) | 48 |
| HhaI | GCGC | 1 cut(s) | 62 |
| Hin1II | CATG | 1 cut(s) | 53 |
| Hin6I | GCGC | 1 cut(s) | 60 |
| HinP1I | GCGC | 1 cut(s) | 60 |
| HinfI | GANTC | 1 cut(s) | 66 |
| Hpy188I | TCNGA | 2 cut(s) | 161, 208 |
| Hpy188III | TCNNGA | 1 cut(s) | 70 |
| HpyCH4III | ACNGT | 1 cut(s) | 200 |
| HpyCH4IV | ACGT | 1 cut(s) | 132 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 39, 185 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 45 |
| HpyF3I | CTNAG | 1 cut(s) | 270 |
| HpySE526I | ACGT | 1 cut(s) | 132 |
| Hsp92II | CATG | 1 cut(s) | 53 |
| HspAI | GCGC | 1 cut(s) | 60 |
| Kzo9I | GATC | 2 cut(s) | 156, 249 |
| LpnPI | CCDG | 2 cut(s) | 48, 55 |
| MaeI | CTAG | 1 cut(s) | 57 |
| MaeII | ACGT | 1 cut(s) | 132 |
| MaeIII | GTNAC | 1 cut(s) | 77 |
| MalI | GATC | 2 cut(s) | 158, 251 |
| MboI | GATC | 2 cut(s) | 156, 249 |
| MboII | GAAGA | 1 cut(s) | 254 |
| MflI | RGATCY | 1 cut(s) | 249 |
| MlsI | TGGCCA | 1 cut(s) | 48 |
| MluCI | AATT | 2 cut(s) | 175, 283 |
| MluNI | TGGCCA | 1 cut(s) | 48 |
| MnlI | CCTC | 4 cut(s) | 20, 155, 209, 269 |
| Mox20I | TGGCCA | 1 cut(s) | 48 |
| MscI | TGGCCA | 1 cut(s) | 48 |
| MseI | TTAA | 3 cut(s) | 146, 189, 282 |
| Msp20I | TGGCCA | 1 cut(s) | 48 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 45 |
| NdeII | GATC | 2 cut(s) | 156, 249 |
| NlaIII | CATG | 1 cut(s) | 53 |
| PfeI | GAWTC | 1 cut(s) | 66 |
| Ple19I | CGATCG | 1 cut(s) | 159 |
| PshBI | ATTAAT | 1 cut(s) | 146 |
| PspPI | GGNCC | 1 cut(s) | 140 |
| PsuI | RGATCY | 1 cut(s) | 249 |
| PvuI | CGATCG | 1 cut(s) | 159 |
| SaqAI | TTAA | 3 cut(s) | 146, 189, 282 |
| Sau3AI | GATC | 2 cut(s) | 156, 249 |
| Sau96I | GGNCC | 1 cut(s) | 140 |
| SetI | ASST | 7 cut(s) | 12, 35, 135, 142, 173, 271, 280 |
| SgeI | CNNG | 7 cut(s) | 35, 56, 62, 69, 75, 82, 249 |
| SinI | GGWCC | 1 cut(s) | 140 |
| Sse9I | AATT | 2 cut(s) | 175, 283 |
| SspMI | CTAG | 1 cut(s) | 57 |
| TaaI | ACNGT | 1 cut(s) | 200 |
| TaiI | ACGT | 1 cut(s) | 135 |
| TasI | AATT | 2 cut(s) | 175, 283 |
| TfiI | GAWTC | 1 cut(s) | 66 |
| Tru1I | TTAA | 3 cut(s) | 146, 189, 282 |
| Tru9I | TTAA | 3 cut(s) | 146, 189, 282 |
| TscAI | CASTG | 1 cut(s) | 205 |
| TspRI | CASTG | 1 cut(s) | 205 |
| VpaK11BI | GGWCC | 1 cut(s) | 140 |
| VspI | ATTAAT | 1 cut(s) | 146 |
| XspI | CTAG | 1 cut(s) | 57 |