Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000986

Physical Location & Seq

Genomic Coordinates Forward (+)

4199783 .. 4201658

Gene Structure 1876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G059400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAGGGGATCAACAGTTCTGCTGTTGCTTGTCTTAGGGTTTATAGGTCAAAAAAGCAGCTGCGTTGATATCTTCCCTGGAAAAAAGCACTTTGTGCGAATCGTGAACCAGCTGGAGAAGGAACAACTCGACTACCATTGTCGATCGGCAGACGATGATCTTGGCCTTCGCAGCCTTCTCCCCAATGGGGGGGAGTGGGAGTTTGGATTTCGCAATGACTTCCTCAAGACACACTGGGACTGTGATTTTTGGTACGCAAATTACAGTGCTCATTTTCGAGCGTTTGACTTTTATGATGATTTTTTGGAAAAATGTGGTGGGGCGCACTGCATATGGGCGGCCAGAGAGGACGGAATATCCTTGTTTAAATATGCATACAACGTGGATAACATCTATATTTCTTTTAGTGAAAAATATTTTTCGAATACAAGCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

146

Amino Acids

16.9

Weight (kDa)

5.28

Isoelectric Point (pI)

25.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11765 AT1G28305 AT1G28306 AT2G06090 AT2G23142 AT2G23148 AT2G24870 AT2G24880 AT3G10460 AT3G26860 AT3G26860 AT3G26870 AT3G26880 AT3G27329 AT3G27331 AT3G27680 AT4G10895 AT4G29037 AT5G04047 AT5G04347 AT5G04347 AT5G04350 AT5G27238 AT5G38435 AT5G38440
fragaria_vesca	FvH4_2g19740 FvH4_3g21860 FvH4_4g05400
malus_domestica	MD05G1181700.v1.1 MD13G1110700.v1.1
prunus_persica	Prupe.1G059400_v2.0.a1 Prupe.1G059600_v2.0.a1 Prupe.1G219300_v2.0.a1 Prupe.1G219600_v2.0.a1 Prupe.1G219700_v2.0.a1 Prupe.8G208500_v2.0.a1 Prupe.8G208600_v2.0.a1 Prupe.8G208800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396541 RchiOBHm_Chr4g0396551
rosa_laevigata	RLG00000009525 RLG00000009526 RLG00000012772 RLG00000013033
rosa_multiflora	Rmu_sc0001781.1_g000005 Rmu_sc0001781.1_g000008 Rmu_sc0002909.1_g000007
rosa_roxburghii	Rroxscaffold_5G00341400
rosa_rugosa	Rorug03G0349100 Rorug05G0091600 Rorug06G0160300
rosa_samantha	Rh4AG069600 Rh4AG069800 Rh4BG067300 Rh4BG067400 Rh4CG075200 Rh4CG075300 Rh4DG064800 Rh5BG181300 Rh5DG183000
rosa_wichuraiana	Rw4G005590 Rw5G016720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	338
AclWI	GGATC	1 cut(s)	16
AcoI	YGGCCR	1 cut(s)	339
AdeI	CACNNNGTG	1 cut(s)	94
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	3 cut(s)	187, 188, 189
AjnI	CCWGG	1 cut(s)	76
AloI	GAACNNNNNNTCC	1 cut(s)	32
AluBI	AGCT	2 cut(s)	60, 112
AluI	AGCT	2 cut(s)	60, 112
Alw21I	GWGCWC	1 cut(s)	271
AlwI	GGATC	1 cut(s)	16
AoxI	GGCC	2 cut(s)	163, 339
ApeKI	GCWGC	3 cut(s)	57, 60, 171
AspLEI	GCGC	1 cut(s)	325
AsuII	TTCGAA	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	271
BbvI	GCAGC	3 cut(s)	47, 69, 183
BciT130I	CCWGG	1 cut(s)	78
BisI	GCNGC	4 cut(s)	58, 61, 172, 339
BlsI	GCNGC	4 cut(s)	59, 62, 173, 340
Bme1390I	CCNGG	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	78
BmrI	ACTGGG	1 cut(s)	244
BmuI	ACTGGG	1 cut(s)	244
BpmI	CTGGAG	1 cut(s)	134
Bpu14I	TTCGAA	1 cut(s)	422
BpuEI	CTTGAG	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	76
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 188, 189
Bse1I	ACTGG	1 cut(s)	239
Bse3DI	GCAATG	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	76
BseLI	CCNNNNNNNGG	3 cut(s)	187, 188, 189
BseMI	GCAATG	1 cut(s)	220
BseNI	ACTGG	1 cut(s)	239
BseXI	GCAGC	3 cut(s)	47, 69, 183
Bsh1285I	CGRYCG	1 cut(s)	146
BshFI	GGCC	2 cut(s)	165, 341
BsiEI	CGRYCG	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	3 cut(s)	187, 188, 189
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	2 cut(s)	165, 341
Bsp119I	TTCGAA	1 cut(s)	422
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	3 cut(s)	8, 143, 157
BspACI	CCGC	1 cut(s)	338
BspANI	GGCC	2 cut(s)	165, 341
BspPI	GGATC	1 cut(s)	16
BspT104I	TTCGAA	1 cut(s)	422
BsrDI	GCAATG	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	3 cut(s)	8, 143, 157
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	3 cut(s)	16, 242, 266
BstAPI	GCANNNNNTGC	1 cut(s)	94
BstBI	TTCGAA	1 cut(s)	422
BstDEI	CTNAG	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	3 cut(s)	11, 146, 160
BstMBI	GATC	3 cut(s)	8, 143, 157
BstMCI	CGRYCG	1 cut(s)	146
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 171
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	76
BstV1I	GCAGC	3 cut(s)	47, 69, 183
BsuRI	GGCC	2 cut(s)	165, 341
BtsI	GCAGTG	1 cut(s)	325
BtsIMutI	CAGTG	3 cut(s)	232, 271, 325
CfoI	GCGC	1 cut(s)	325
Csp6I	GTAC	1 cut(s)	253
CviJI	RGCY	5 cut(s)	60, 112, 165, 174, 341
CviKI_1	RGCY	5 cut(s)	60, 112, 165, 174, 341
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	1 cut(s)	34
DpnI	GATC	3 cut(s)	10, 145, 159
DpnII	GATC	3 cut(s)	8, 143, 157
DraI	TTTAAA	1 cut(s)	367
DraIII	CACNNNGTG	1 cut(s)	94
EaeI	YGGCCR	1 cut(s)	339
Eco32I	GATATC	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	76
EcoRV	GATATC	1 cut(s)	70
EcoT22I	ATGCAT	1 cut(s)	376
FaiI	YATR	7 cut(s)	44, 294, 332, 334, 372, 376, 396
FaqI	GGGAC	1 cut(s)	251
FauNDI	CATATG	1 cut(s)	332
Fnu4HI	GCNGC	4 cut(s)	58, 61, 172, 339
Fsp4HI	GCNGC	4 cut(s)	58, 61, 172, 339
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	4 cut(s)	58, 61, 172, 339
GsuI	CTGGAG	1 cut(s)	134
HaeIII	GGCC	2 cut(s)	165, 341
HhaI	GCGC	1 cut(s)	325
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HinfI	GANTC	1 cut(s)	99
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188III	TCNNGA	2 cut(s)	103, 226
Hpy8I	GTNNAC	1 cut(s)	106
HpyAV	CCTTC	3 cut(s)	112, 176, 185
HpyCH4III	ACNGT	3 cut(s)	16, 242, 266
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	2 cut(s)	330, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 171
HpyF3I	CTNAG	1 cut(s)	34
HpySE526I	ACGT	1 cut(s)	381
HspAI	GCGC	1 cut(s)	323
Kzo9I	GATC	3 cut(s)	8, 143, 157
LpnPI	CCDG	6 cut(s)	63, 90, 98, 122, 220, 355
Lsp1109I	GCAGC	3 cut(s)	47, 69, 183
MaeII	ACGT	1 cut(s)	381
MalI	GATC	3 cut(s)	10, 145, 159
MboI	GATC	3 cut(s)	8, 143, 157
MboII	GAAGA	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	1 cut(s)	259
MnlI	CCTC	2 cut(s)	233, 340
Mph1103I	ATGCAT	1 cut(s)	376
MseI	TTAA	1 cut(s)	366
MspA1I	CMGCKG	2 cut(s)	60, 112
MspR9I	CCNGG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	94, 171
NdeI	CATATG	1 cut(s)	332
NdeII	GATC	3 cut(s)	8, 143, 157
NsiI	ATGCAT	1 cut(s)	376
NspV	TTCGAA	1 cut(s)	422
PfeI	GAWTC	1 cut(s)	99
PkrI	GCNGC	4 cut(s)	59, 62, 173, 340
Ple19I	CGATCG	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PvuI	CGATCG	1 cut(s)	146
PvuII	CAGCTG	2 cut(s)	60, 112
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	4 cut(s)	58, 61, 172, 339
Sau3AI	GATC	3 cut(s)	8, 143, 157
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	4 cut(s)	49, 62, 114, 384
SfuI	TTCGAA	1 cut(s)	422
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	1 cut(s)	259
SsiI	CCGC	1 cut(s)	338
SspI	AATATT	1 cut(s)	416
StyD4I	CCNGG	1 cut(s)	76
TaaI	ACNGT	3 cut(s)	16, 242, 266
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	4 cut(s)	129, 142, 277, 422
TasI	AATT	1 cut(s)	259
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	1 cut(s)	99
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	3 cut(s)	239, 271, 332
TseI	GCWGC	3 cut(s)	57, 60, 171
TspGWI	ACGGA	1 cut(s)	366
TspRI	CASTG	3 cut(s)	239, 271, 332
Zsp2I	ATGCAT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.