Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000986

Physical Location & Seq

Genomic Coordinates Forward (+)

15388018 .. 15388689

Gene Structure 672 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G38435.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCATAGTCTCTCGTGGTTTCTCCTCGTCATTGGATTATCCGTAGGGTTGAGTAGCGGAAAGTGGAATGAGAAAAACTCTGTCATCTTTACGAATTCTCTTGGTCGGAACAAAGTCTTGAAAGTAAATTGCATATCAAATGATGACAATCTAGGCTTCCACTTTTTGCGCCATGGACAAACCTACGATTTTAGTTTCCACGATAGTCTTTTCAAATCAGAATTCTATTGTGACCTATGGCAAGGCCCTAATTTCAAGTTGCATGCAGCATTTACGGCATATGAAGGTGGTGGTTTGATAGTTCATTATGGTAAAAAGAACTTTTGGGATGTTAGAGATGATGGGATCTATTTCACCCATGGCCAAAAAATGCCCAAGTTAGAGTATACGTGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

15.31

Weight (kDa)

8.52

Isoelectric Point (pI)

25.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	28 - 131	2.1e-28	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11765 AT1G28305 AT1G28306 AT2G06090 AT2G23142 AT2G23148 AT2G24870 AT2G24880 AT3G10460 AT3G26860 AT3G26860 AT3G26870 AT3G26880 AT3G27329 AT3G27331 AT3G27680 AT4G10895 AT4G29037 AT5G04047 AT5G04347 AT5G04347 AT5G04350 AT5G27238 AT5G38435 AT5G38440
fragaria_vesca	FvH4_2g19740 FvH4_3g21860 FvH4_4g05400
malus_domestica	MD05G1181700.v1.1 MD13G1110700.v1.1
prunus_persica	Prupe.1G059400_v2.0.a1 Prupe.1G059600_v2.0.a1 Prupe.1G219300_v2.0.a1 Prupe.1G219600_v2.0.a1 Prupe.1G219700_v2.0.a1 Prupe.8G208500_v2.0.a1 Prupe.8G208600_v2.0.a1 Prupe.8G208800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0396541 RchiOBHm_Chr4g0396551
rosa_laevigata	RLG00000009525 RLG00000009526 RLG00000012772 RLG00000013033
rosa_multiflora	Rmu_sc0001781.1_g000005 Rmu_sc0001781.1_g000008 Rmu_sc0002909.1_g000007
rosa_roxburghii	Rroxscaffold_5G00341400
rosa_rugosa	Rorug03G0349100 Rorug05G0091600 Rorug06G0160300
rosa_samantha	Rh4AG069600 Rh4AG069800 Rh4BG067300 Rh4BG067400 Rh4CG075200 Rh4CG075300 Rh4DG064800 Rh5BG181300 Rh5DG183000
rosa_wichuraiana	Rw4G005590 Rw5G016720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	386
AciI	CCGC	1 cut(s)	57
AclWI	GGATC	1 cut(s)	353
AcoI	YGGCCR	1 cut(s)	361
AcsI	RAATTY	2 cut(s)	94, 221
AgsI	TTSAA	3 cut(s)	121, 214, 256
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	1 cut(s)	353
AoxI	GGCC	2 cut(s)	244, 361
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	2 cut(s)	94, 221
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	346
BalI	TGGCCA	1 cut(s)	363
BauI	CACGAG	1 cut(s)	13
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	1 cut(s)	335
BceAI	ACGGC	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	1 cut(s)	152
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	245
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
BsaAI	YACGTR	1 cut(s)	390
BsaBI	GATNNNNATC	1 cut(s)	147
BsaJI	CCNNGG	2 cut(s)	172, 358
Bse8I	GATNNNNATC	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	172, 358
BseGI	GGATG	1 cut(s)	334
BseJI	GATNNNNATC	1 cut(s)	147
BseRI	GAGGAG	1 cut(s)	14
BseXI	GCAGC	1 cut(s)	278
BshFI	GGCC	2 cut(s)	246, 363
BsmAI	GTCTC	1 cut(s)	14
BsnI	GGCC	2 cut(s)	246, 363
Bsp143I	GATC	1 cut(s)	345
Bsp19I	CCATGG	2 cut(s)	172, 358
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	2 cut(s)	246, 363
BspPI	GGATC	1 cut(s)	353
BssECI	CCNNGG	2 cut(s)	172, 358
BssMI	GATC	1 cut(s)	345
BssNAI	GTATAC	1 cut(s)	387
BssSI	CACGAG	1 cut(s)	13
BssT1I	CCWWGG	2 cut(s)	172, 358
Bst1107I	GTATAC	1 cut(s)	387
Bst2BI	CACGAG	1 cut(s)	13
BstBAI	YACGTR	1 cut(s)	390
BstC8I	GCNNGC	1 cut(s)	264
BstDSI	CCRYGG	2 cut(s)	172, 358
BstF5I	GGATG	1 cut(s)	334
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	1 cut(s)	348
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	345
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNSI	RCATGY	1 cut(s)	266
BstV1I	GCAGC	1 cut(s)	278
BstX2I	RGATCY	1 cut(s)	345
BstYI	RGATCY	1 cut(s)	345
BstZ17I	GTATAC	1 cut(s)	387
BsuRI	GGCC	2 cut(s)	246, 363
BtgI	CCRYGG	2 cut(s)	172, 358
BtsCI	GGATG	1 cut(s)	334
Cac8I	GCNNGC	1 cut(s)	264
CfoI	GCGC	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	245
CviAII	CATG	3 cut(s)	173, 263, 359
CviJI	RGCY	3 cut(s)	156, 246, 363
CviKI_1	RGCY	3 cut(s)	156, 246, 363
DpnI	GATC	1 cut(s)	347
DpnII	GATC	1 cut(s)	345
EaeI	YGGCCR	1 cut(s)	361
Eco130I	CCWWGG	2 cut(s)	172, 358
EcoO109I	RGGNCCY	1 cut(s)	245
EcoRI	GAATTC	2 cut(s)	94, 221
EcoT14I	CCWWGG	2 cut(s)	172, 358
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	172, 358
FaeI	CATG	3 cut(s)	176, 266, 362
FatI	CATG	3 cut(s)	172, 262, 358
FauNDI	CATATG	1 cut(s)	280
FblI	GTMKAC	1 cut(s)	386
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	152
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	1 cut(s)	267
HaeIII	GGCC	2 cut(s)	246, 363
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	3 cut(s)	176, 266, 362
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	1 cut(s)	387
Hpy188I	TCNGA	2 cut(s)	108, 220
Hpy188III	TCNNGA	1 cut(s)	118
Hpy8I	GTNNAC	1 cut(s)	387
HpyAV	CCTTC	1 cut(s)	278
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	4 cut(s)	4, 132, 262, 266
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpySE526I	ACGT	1 cut(s)	389
Hsp92II	CATG	3 cut(s)	176, 266, 362
HspAI	GCGC	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	345
Lsp1109I	GCAGC	1 cut(s)	278
MaeI	CTAG	1 cut(s)	152
MaeII	ACGT	1 cut(s)	389
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	1 cut(s)	347
MboI	GATC	1 cut(s)	345
MflI	RGATCY	1 cut(s)	345
MlsI	TGGCCA	1 cut(s)	363
MluCI	AATT	4 cut(s)	94, 127, 221, 250
MluNI	TGGCCA	1 cut(s)	363
MmeI	TCCRAC	1 cut(s)	86
MnlI	CCTC	1 cut(s)	35
Mox20I	TGGCCA	1 cut(s)	363
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	363
Msp20I	TGGCCA	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	275
NcoI	CCATGG	2 cut(s)	172, 358
NdeI	CATATG	1 cut(s)	280
NdeII	GATC	1 cut(s)	345
NlaIII	CATG	3 cut(s)	176, 266, 362
NmuCI	GTSAC	1 cut(s)	230
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	266
PaeI	GCATGC	1 cut(s)	266
PkrI	GCNGC	1 cut(s)	268
Ppu21I	YACGTR	1 cut(s)	390
PspPI	GGNCC	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	345
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	345
Sau96I	GGNCC	1 cut(s)	245
SetI	ASST	4 cut(s)	185, 237, 289, 392
SphI	GCATGC	1 cut(s)	266
Sse9I	AATT	4 cut(s)	94, 127, 221, 250
SsiI	CCGC	1 cut(s)	57
SspMI	CTAG	1 cut(s)	152
StyI	CCWWGG	2 cut(s)	172, 358
TaiI	ACGT	1 cut(s)	392
TasI	AATT	4 cut(s)	94, 127, 221, 250
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	2 cut(s)	293, 297
TspGWI	ACGGA	1 cut(s)	31
XapI	RAATTY	2 cut(s)	94, 221
XceI	RCATGY	1 cut(s)	266
XmiI	GTMKAC	1 cut(s)	386
XspI	CTAG	1 cut(s)	152
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.